Wall clock time and date at job start Mon Mar 30 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47214 * 2 1 4 4 C 1.52995 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47175 * 179.97438 * 4 3 2 6 6 S 1.81393 * 109.47501 * 179.97438 * 5 4 3 7 7 O 1.42102 * 110.54287 * 68.37682 * 6 5 4 8 8 O 1.42100 * 110.54135 * 291.62451 * 6 5 4 9 9 N 1.65596 * 104.45231 * 180.02562 * 6 5 4 10 10 C 1.47586 * 134.49190 * 89.99576 * 9 6 5 11 11 C 1.53950 * 86.11354 * 155.36007 * 10 9 6 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47813 * 134.45968 * 269.86716 * 9 6 5 21 21 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46829 * 299.99412 * 1 2 3 23 23 H 1.08995 * 109.47227 * 59.99731 * 1 2 3 24 24 H 1.08998 * 109.47311 * 240.00458 * 2 1 3 25 25 H 1.09002 * 109.47513 * 120.00039 * 2 1 3 26 26 H 1.09003 * 109.47015 * 59.99808 * 3 2 1 27 27 H 1.09002 * 109.46913 * 300.00406 * 3 2 1 28 28 H 1.08998 * 109.47540 * 60.00341 * 4 3 2 29 29 H 1.09002 * 109.47322 * 299.99899 * 4 3 2 30 30 H 1.09003 * 109.47015 * 59.99551 * 5 4 3 31 31 H 1.09002 * 109.46913 * 300.00150 * 5 4 3 32 32 H 1.09008 * 113.76654 * 41.06239 * 10 9 6 33 33 H 1.08993 * 113.87299 * 269.67717 * 10 9 6 34 34 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.09002 * 113.76703 * 90.37808 * 20 9 6 37 37 H 1.08998 * 113.83277 * 318.91786 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 16 5.8940 2.8851 -0.0013 7 8 6.3926 2.3942 -1.2381 8 8 6.3926 2.3953 1.2359 9 7 6.3072 4.4887 -0.0013 10 6 6.5652 5.4903 1.0515 11 6 7.4156 6.2241 -0.0013 12 6 7.2240 7.7189 -0.0012 13 1 6.5589 8.1781 0.7151 14 6 7.8936 8.4997 -0.9194 15 7 8.6990 7.9399 -1.7956 16 14 7.6567 10.3526 -0.9189 17 1 8.6621 10.9800 -0.0240 18 1 7.8286 10.8739 -2.2988 19 1 6.2913 10.6769 -0.4337 20 6 6.5679 5.4906 -1.0563 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9330 0.9289 -0.8909 29 1 3.9338 0.9286 0.8891 30 1 3.7170 3.3991 0.8887 31 1 3.7163 3.3986 -0.8913 32 1 7.1426 5.1053 1.8921 33 1 5.6781 6.0422 1.3622 34 1 8.4652 5.9302 0.0000 35 1 9.1698 8.4892 -2.4417 36 1 5.6805 6.0419 -1.3675 37 1 7.1473 5.1059 -1.8955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:55 Heat of formation + Delta-G solvation = -86.267646 kcal Electronic energy + Delta-G solvation = -17737.500408 eV Core-core repulsion = 14834.434270 eV Total energy + Delta-G solvation = -2903.066139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65360 -38.13955 -37.26185 -36.98378 -34.53621 -33.25998 -30.03714 -27.95864 -26.77945 -26.30808 -23.31590 -22.00513 -21.44198 -19.60280 -18.77257 -18.21060 -17.39062 -17.28772 -16.57444 -16.40393 -15.71874 -15.07397 -14.70482 -14.61579 -14.53019 -14.29315 -13.51543 -13.32067 -13.20471 -13.14361 -13.11552 -13.03790 -12.97884 -12.76728 -12.53457 -12.25944 -12.13466 -12.02722 -11.89775 -11.44483 -11.40430 -11.03714 -10.85751 -10.53175 -9.72287 -8.10505 -6.22160 -0.72687 1.49810 1.51250 1.60838 1.65910 2.48789 2.90245 3.04291 3.22045 3.51874 3.74428 3.96044 4.06442 4.14863 4.31730 4.46418 4.47739 4.49223 4.65873 4.76482 4.79148 4.81861 4.83271 4.94896 4.97018 5.10650 5.13385 5.17421 5.27469 5.37137 5.46830 5.66307 5.89024 5.93489 6.30489 6.87964 7.47362 8.99405 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.004174 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.546770 B = 6705.948813 C = 7104.053316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.132 4.132 3 C -0.110 4.110 4 C -0.123 4.123 5 C -0.604 4.604 6 S 2.614 3.386 7 O -1.000 7.000 8 O -0.994 6.994 9 N -1.042 6.042 10 C 0.131 3.869 11 C 0.016 3.984 12 C -0.525 4.525 13 H 0.074 0.926 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.259 1.259 20 C 0.137 3.863 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 -10.142 3.801 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.170 4.170 3 C -0.148 4.148 4 C -0.163 4.163 5 C -0.737 4.737 6 S 2.716 3.284 7 O -0.991 6.991 8 O -0.985 6.985 9 N -0.881 5.881 10 C 0.007 3.993 11 C -0.005 4.005 12 C -0.564 4.564 13 H 0.092 0.908 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.183 1.183 20 C 0.012 3.988 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.084 -11.073 3.659 19.067 hybrid contribution -0.099 1.138 -0.391 1.207 sum -15.184 -9.936 3.268 18.437 Atomic orbital electron populations 1.21769 0.94998 1.02101 1.02095 1.21614 0.96685 0.96216 1.02485 1.21588 0.92016 0.97869 1.03361 1.21527 0.99438 0.91473 1.03823 1.30503 1.22886 1.06734 1.13590 1.04632 0.79333 0.71832 0.72596 1.93504 1.79798 1.79129 1.46645 1.93495 1.79724 1.79077 1.46181 1.60180 1.84591 1.25128 1.18168 1.22983 0.99341 0.85891 0.91114 1.20509 0.93907 0.94131 0.91976 1.21423 1.26652 0.91628 1.16679 0.90794 1.25858 0.94479 1.03179 0.95129 1.70103 1.29410 1.37282 1.19573 0.85523 0.79013 0.79956 0.76909 1.20547 1.21582 1.18315 1.22977 0.98830 0.85529 0.91473 0.92178 0.92413 0.92572 0.91813 0.91602 0.90690 0.91004 0.90486 0.90099 0.82840 0.83403 0.91266 0.88211 0.95690 0.92894 0.89556 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.13 -1.84 5.93 30.60 0.18 -1.66 16 3 C -0.11 -1.68 5.21 30.59 0.16 -1.52 16 4 C -0.12 -2.40 5.22 30.59 0.16 -2.24 16 5 C -0.60 -13.02 6.18 71.98 0.44 -12.58 16 6 S 2.61 88.34 5.93 -56.49 -0.34 88.01 16 7 O -1.00 -41.11 18.02 -127.65 -2.30 -43.41 16 8 O -0.99 -38.61 18.02 -127.65 -2.30 -40.91 16 9 N -1.04 -39.51 4.00 -529.18 -2.12 -41.63 16 10 C 0.13 4.99 8.47 86.49 0.73 5.72 16 11 C 0.02 0.78 3.60 -10.88 -0.04 0.74 16 12 C -0.52 -26.43 8.77 25.60 0.22 -26.21 16 13 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 14 C 0.01 0.68 5.46 84.66 0.46 1.14 16 15 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 16 Si 0.96 40.96 29.54 68.60 2.03 42.98 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 C 0.14 5.98 8.48 86.44 0.73 6.72 16 21 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.10 3.21 8.09 -2.39 -0.02 3.19 16 34 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.09 3.44 8.09 -2.39 -0.02 3.42 16 37 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -67.20 323.66 0.05 -67.16 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.02 Total: 10.92 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.77 Total: -31.00 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -1.83 Total: -93.74 kcal Atomic # 8 Polarization: -79.72 SS G_CDS: -4.60 Total: -84.32 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 88.34 SS G_CDS: -0.34 Total: 88.01 kcal Total: -67.20 0.05 -67.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.112 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds