Wall clock time and date at job start Mon Mar 30 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 S 1.81404 * 109.46946 * 60.00232 * 5 2 1 7 7 O 1.42098 * 110.54122 * 291.62548 * 6 5 2 8 8 O 1.42102 * 110.54223 * 68.37613 * 6 5 2 9 9 N 1.65600 * 104.45074 * 180.02562 * 6 5 2 10 10 C 1.47065 * 136.05679 * 269.63603 * 9 6 5 11 11 C 1.53245 * 88.08055 * 207.19930 * 10 9 6 12 12 C 1.50693 * 114.32262 * 220.46690 * 11 10 9 13 13 H 1.08002 * 120.00095 * 93.75776 * 12 11 10 14 14 C 1.37881 * 120.00298 * 273.75574 * 12 11 10 15 15 N 1.31514 * 120.00591 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99738 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47093 * 89.99856 * 16 14 12 18 18 H 1.48500 * 109.47263 * 210.00037 * 16 14 12 19 19 H 1.48506 * 109.46936 * 329.99939 * 16 14 12 20 20 C 1.47064 * 136.05693 * 89.99532 * 9 6 5 21 21 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 22 22 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 23 23 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 26 26 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 27 27 H 1.09000 * 109.46986 * 299.99746 * 4 2 1 28 28 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 29 29 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 32 32 H 1.09008 * 113.46481 * 321.92864 * 10 9 6 33 33 H 1.09000 * 113.47471 * 92.37108 * 10 9 6 34 34 H 1.08996 * 114.19974 * 87.72315 * 11 10 9 35 35 H 0.96994 * 120.00606 * 180.02562 * 15 14 12 36 36 H 1.09003 * 113.47110 * 267.62301 * 20 9 6 37 37 H 1.08999 * 113.46928 * 38.06562 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 16 1.4354 -2.4315 1.2492 7 8 0.0280 -2.4629 1.4430 8 8 2.0481 -3.1770 0.2060 9 7 2.0530 -3.0882 2.6383 10 6 3.2786 -3.8084 3.0152 11 6 2.4782 -4.4783 4.1373 12 6 3.2267 -4.6134 5.4382 13 1 3.1267 -3.8544 6.2001 14 6 4.0392 -5.7059 5.6560 15 7 4.6920 -5.8240 6.7916 16 14 4.2127 -7.0183 4.3381 17 1 5.3418 -6.6702 3.4385 18 1 4.4771 -8.3315 4.9790 19 1 2.9570 -7.0964 3.5490 20 6 1.6145 -3.2134 4.0364 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6768 -0.2074 -2.1392 29 1 3.1300 -0.7215 -1.2490 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -0.2074 2.1392 32 1 3.6232 -4.5073 2.2530 33 1 4.0719 -3.1550 3.3783 34 1 1.9676 -5.3933 3.8370 35 1 5.2638 -6.5924 6.9447 36 1 1.9601 -2.3999 4.6743 37 1 0.5470 -3.4073 4.1409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:57 Heat of formation + Delta-G solvation = -47.653791 kcal Electronic energy + Delta-G solvation = -18630.215415 eV Core-core repulsion = 15728.823699 eV Total energy + Delta-G solvation = -2901.391716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.53477 -37.78250 -36.82231 -35.64140 -32.58993 -28.99723 -27.99032 -27.49217 -27.45553 -25.24223 -24.42868 -19.82655 -19.48204 -18.24838 -17.39073 -16.96913 -16.04538 -15.91456 -14.90615 -14.67244 -14.57009 -14.00715 -13.59951 -13.44089 -13.14511 -12.80642 -12.52301 -12.33859 -12.25704 -11.98810 -11.83456 -11.77277 -11.71947 -11.42538 -11.29068 -11.12064 -10.98768 -10.92833 -10.38481 -10.27130 -9.96774 -9.50378 -9.21583 -8.65622 -8.41153 -6.18936 -4.21222 0.49496 2.94794 3.25954 3.34534 3.38589 4.00828 4.21029 4.34462 4.35419 4.55830 4.62554 5.04657 5.09588 5.11961 5.37483 5.45637 5.46027 5.56889 5.62388 5.65618 5.71648 5.84464 5.88788 5.93233 6.07284 6.12059 6.12253 6.19750 6.28525 6.46754 6.51902 7.19328 7.31778 7.59850 8.37884 8.83435 9.42526 10.92833 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.039326 B = 0.005434 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.823505 B = 5151.390830 C = 5257.836277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.133 4.133 4 C -0.176 4.176 5 C -0.630 4.630 6 S 2.624 3.376 7 O -0.958 6.958 8 O -0.958 6.958 9 N -1.044 6.044 10 C 0.111 3.889 11 C -0.010 4.010 12 C -0.510 4.510 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.894 5.894 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.260 1.260 20 C 0.133 3.867 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 11.818 -12.188 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.055 4.055 3 C -0.191 4.191 4 C -0.233 4.233 5 C -0.758 4.758 6 S 2.720 3.280 7 O -0.949 6.949 8 O -0.948 6.948 9 N -0.883 5.883 10 C -0.015 4.015 11 C -0.032 4.032 12 C -0.548 4.548 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.697 3.303 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.185 1.185 20 C 0.008 3.992 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.125 11.377 -12.932 17.971 hybrid contribution 0.741 0.046 -0.338 0.816 sum -4.384 11.423 -13.270 18.050 Atomic orbital electron populations 1.22367 0.93499 1.04244 1.03171 1.20243 0.96075 0.96889 0.92258 1.21827 1.01195 0.94058 1.02027 1.22371 1.02544 1.01473 0.96930 1.30904 1.12684 1.26207 1.06035 1.04606 0.74441 0.76237 0.72670 1.93539 1.29125 1.86896 1.85310 1.93545 1.78451 1.68193 1.54652 1.60139 1.34292 1.70326 1.23578 1.23296 0.87182 0.93633 0.97353 1.20910 0.94021 0.93516 0.94748 1.20826 1.26344 1.08390 0.99271 0.90176 1.24990 0.94850 0.97612 0.95126 1.69886 1.29139 1.30209 1.23837 0.86933 0.79536 0.81523 0.82334 1.19853 1.21168 1.18478 1.22670 0.99407 0.99510 0.77571 0.91394 0.91332 0.90836 0.92309 0.92154 0.92313 0.90840 0.91320 0.91399 0.85258 0.85260 0.92341 0.90066 0.91426 0.92377 0.90486 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.00 37.16 0.30 -1.67 16 2 C -0.05 -0.59 0.79 -154.51 -0.12 -0.72 16 3 C -0.13 -1.20 8.47 37.16 0.31 -0.88 16 4 C -0.18 -2.01 8.00 37.16 0.30 -1.71 16 5 C -0.63 -7.72 5.18 37.16 0.19 -7.53 16 6 S 2.62 43.54 5.00 -107.50 -0.54 43.01 16 7 O -0.96 -17.69 15.69 -57.54 -0.90 -18.59 16 8 O -0.96 -18.10 15.69 -57.54 -0.90 -19.00 16 9 N -1.04 -19.10 4.10 -125.34 -0.51 -19.61 16 10 C 0.11 2.21 7.79 -8.64 -0.07 2.14 16 11 C -0.01 -0.22 2.99 -91.39 -0.27 -0.50 16 12 C -0.51 -13.12 9.38 -34.44 -0.32 -13.44 16 13 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 14 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 16 Si 0.87 20.44 27.42 -169.99 -4.66 15.78 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -5.94 6.22 56.52 0.35 -5.59 16 20 C 0.13 2.50 8.26 -8.51 -0.07 2.43 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.96 5.47 -51.93 -0.28 0.68 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.98 5.46 -51.93 -0.28 0.69 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.13 1.43 8.14 -51.92 -0.42 1.00 16 31 H 0.13 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 34 H 0.07 1.54 6.50 -51.93 -0.34 1.20 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -30.58 306.16 -7.99 -38.56 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.00 Total: 0.10 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 0.15 Total: -19.89 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.26 Total: -44.58 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.81 Total: -37.59 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.66 Total: 15.78 kcal Atomic # 16 Polarization: 43.54 SS G_CDS: -0.54 Total: 43.01 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.58 -7.99 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.090 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds