Wall clock time and date at job start Mon Mar 30 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 S 1.81404 * 109.46946 * 60.00232 * 5 2 1 7 7 O 1.42098 * 110.54122 * 291.62548 * 6 5 2 8 8 O 1.42102 * 110.54223 * 68.37613 * 6 5 2 9 9 N 1.65600 * 104.45074 * 180.02562 * 6 5 2 10 10 C 1.47065 * 136.05679 * 269.63603 * 9 6 5 11 11 C 1.53245 * 88.08055 * 207.19930 * 10 9 6 12 12 C 1.50693 * 114.32262 * 220.46690 * 11 10 9 13 13 H 1.08002 * 120.00095 * 93.75776 * 12 11 10 14 14 C 1.37881 * 120.00298 * 273.75574 * 12 11 10 15 15 N 1.31514 * 120.00591 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99738 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47093 * 89.99856 * 16 14 12 18 18 H 1.48500 * 109.47263 * 210.00037 * 16 14 12 19 19 H 1.48506 * 109.46936 * 329.99939 * 16 14 12 20 20 C 1.47064 * 136.05693 * 89.99532 * 9 6 5 21 21 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 22 22 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 23 23 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 26 26 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 27 27 H 1.09000 * 109.46986 * 299.99746 * 4 2 1 28 28 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 29 29 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 32 32 H 1.09008 * 113.46481 * 321.92864 * 10 9 6 33 33 H 1.09000 * 113.47471 * 92.37108 * 10 9 6 34 34 H 1.08996 * 114.19974 * 87.72315 * 11 10 9 35 35 H 0.96994 * 120.00606 * 180.02562 * 15 14 12 36 36 H 1.09003 * 113.47110 * 267.62301 * 20 9 6 37 37 H 1.08999 * 113.46928 * 38.06562 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 16 1.4354 -2.4315 1.2492 7 8 0.0280 -2.4629 1.4430 8 8 2.0481 -3.1770 0.2060 9 7 2.0530 -3.0882 2.6383 10 6 3.2786 -3.8084 3.0152 11 6 2.4782 -4.4783 4.1373 12 6 3.2267 -4.6134 5.4382 13 1 3.1267 -3.8544 6.2001 14 6 4.0392 -5.7059 5.6560 15 7 4.6920 -5.8240 6.7916 16 14 4.2127 -7.0183 4.3381 17 1 5.3418 -6.6702 3.4385 18 1 4.4771 -8.3315 4.9790 19 1 2.9570 -7.0964 3.5490 20 6 1.6145 -3.2134 4.0364 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6768 -0.2074 -2.1392 29 1 3.1300 -0.7215 -1.2490 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -0.2074 2.1392 32 1 3.6232 -4.5073 2.2530 33 1 4.0719 -3.1550 3.3783 34 1 1.9676 -5.3933 3.8370 35 1 5.2638 -6.5924 6.9447 36 1 1.9601 -2.3999 4.6743 37 1 0.5470 -3.4073 4.1409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:57 Heat of formation + Delta-G solvation = -68.805089 kcal Electronic energy + Delta-G solvation = -18631.132604 eV Core-core repulsion = 15728.823699 eV Total energy + Delta-G solvation = -2902.308905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10103 -38.66711 -38.19761 -36.99959 -34.60961 -30.68139 -29.00329 -28.30100 -28.25567 -26.78102 -26.21758 -21.47737 -20.46369 -19.57992 -19.17763 -18.50126 -17.31351 -17.19327 -16.40104 -16.03221 -15.59247 -15.28111 -14.98142 -14.73677 -14.54088 -14.19268 -14.03764 -13.44761 -13.29399 -13.23097 -13.21374 -13.15135 -12.78987 -12.76723 -12.47943 -12.37720 -12.08392 -11.98589 -11.81078 -11.80806 -11.46424 -11.20149 -11.08222 -10.65005 -9.87193 -8.26201 -6.30879 -0.77820 1.38834 1.43019 1.50974 1.60823 2.38235 2.82699 2.95582 3.08900 3.37961 3.59397 3.80248 4.01950 4.13669 4.20205 4.27813 4.48007 4.53124 4.60777 4.71201 4.74137 4.75528 4.81251 4.88170 4.88957 4.95594 5.05207 5.06753 5.21793 5.30258 5.35648 5.43019 5.61786 5.80242 6.32797 6.75753 7.36070 8.88954 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.039326 B = 0.005434 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.823505 B = 5151.390830 C = 5257.836277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.056 4.056 3 C -0.131 4.131 4 C -0.183 4.183 5 C -0.604 4.604 6 S 2.621 3.379 7 O -0.983 6.983 8 O -0.987 6.987 9 N -1.050 6.050 10 C 0.116 3.884 11 C -0.030 4.030 12 C -0.503 4.503 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.942 5.942 16 Si 0.922 3.078 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.253 1.253 20 C 0.140 3.860 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 13.924 -13.958 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.058 4.058 3 C -0.189 4.189 4 C -0.240 4.240 5 C -0.737 4.737 6 S 2.722 3.278 7 O -0.974 6.974 8 O -0.978 6.978 9 N -0.888 5.888 10 C -0.010 4.010 11 C -0.051 4.051 12 C -0.542 4.542 13 H 0.071 0.929 14 C -0.172 4.172 15 N -0.581 5.581 16 Si 0.747 3.253 17 H -0.187 1.187 18 H -0.213 1.213 19 H -0.177 1.177 20 C 0.015 3.985 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.198 13.429 -14.701 20.579 hybrid contribution 0.676 -0.471 0.163 0.839 sum -4.523 12.959 -14.538 19.994 Atomic orbital electron populations 1.22445 0.93705 1.03079 1.04743 1.20376 0.96023 0.98236 0.91164 1.21830 1.01673 0.92052 1.03325 1.22451 1.03022 1.00339 0.98230 1.30682 1.13848 1.21046 1.08128 1.04564 0.73759 0.78001 0.71452 1.93512 1.30650 1.87967 1.85249 1.93512 1.78605 1.70524 1.55138 1.59988 1.33383 1.71870 1.23548 1.23047 0.87691 0.93964 0.96277 1.20894 0.95382 0.94981 0.93891 1.21017 1.25690 1.07242 1.00226 0.92869 1.25692 0.94919 0.99799 0.96821 1.70008 1.30865 1.31279 1.25960 0.86085 0.80050 0.78990 0.80182 1.18674 1.21295 1.17675 1.22573 0.99329 0.98244 0.78351 0.90583 0.89214 0.93295 0.91611 0.90561 0.91464 0.93325 0.89177 0.90782 0.83233 0.82958 0.92457 0.88799 0.92361 0.92396 0.88824 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 8.00 71.98 0.58 -3.02 16 2 C -0.06 -1.06 0.79 -52.18 -0.04 -1.10 16 3 C -0.13 -1.75 8.47 71.98 0.61 -1.14 16 4 C -0.18 -3.69 8.00 71.98 0.58 -3.11 16 5 C -0.60 -12.73 5.18 71.98 0.37 -12.35 16 6 S 2.62 83.21 5.00 -56.49 -0.28 82.93 16 7 O -0.98 -35.53 15.69 -127.65 -2.00 -37.53 16 8 O -0.99 -36.61 15.69 -127.65 -2.00 -38.61 16 9 N -1.05 -36.87 4.10 -550.45 -2.26 -39.13 16 10 C 0.12 4.47 7.79 83.09 0.65 5.12 16 11 C -0.03 -1.31 2.99 -11.29 -0.03 -1.35 16 12 C -0.50 -26.19 9.38 25.60 0.24 -25.95 16 13 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 14 C 0.03 1.44 5.47 84.66 0.46 1.91 16 15 N -0.94 -55.45 13.96 21.45 0.30 -55.15 16 16 Si 0.92 42.22 27.42 68.60 1.88 44.10 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.25 -11.13 6.22 99.48 0.62 -10.51 16 20 C 0.14 5.09 8.26 83.18 0.69 5.77 16 21 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.05 1.22 5.47 -2.39 -0.01 1.20 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 1.23 5.46 -2.39 -0.01 1.22 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.09 3.35 8.10 -2.39 -0.02 3.33 16 34 H 0.06 2.65 6.50 -2.39 -0.02 2.63 16 35 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.09 3.08 8.10 -2.39 -0.02 3.06 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -66.76 306.16 0.67 -66.09 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.94 Total: 12.53 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 4.10 Total: -35.23 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -1.96 Total: -94.28 kcal Atomic # 8 Polarization: -72.14 SS G_CDS: -4.01 Total: -76.14 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 16 Polarization: 83.21 SS G_CDS: -0.28 Total: 82.93 kcal Total: -66.76 0.67 -66.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.716 kcal (2) G-P(sol) polarization free energy of solvation -66.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds