Wall clock time and date at job start Mon Mar 30 2020 04:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46675 * 269.99649 * 3 2 1 5 5 H 1.48502 * 109.47233 * 29.99670 * 3 2 1 6 6 H 1.48498 * 109.46897 * 150.00129 * 3 2 1 7 7 C 1.37879 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99442 * 180.02562 * 7 2 1 10 10 C 1.53503 * 114.20491 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98596 * 139.65156 * 10 9 7 12 12 C 1.34772 * 136.05397 * 152.84244 * 11 10 9 13 13 O 1.21286 * 120.00434 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00116 * 179.97438 * 12 11 10 15 15 H 1.09005 * 109.47074 * 305.00436 * 14 12 11 16 16 O 1.42894 * 109.47378 * 185.00243 * 14 12 11 17 17 C 1.50699 * 109.46802 * 65.00147 * 14 12 11 18 18 C 1.38237 * 119.99969 * 84.73050 * 17 14 12 19 19 C 1.38239 * 119.99695 * 179.80768 * 18 17 14 20 20 C 1.38235 * 120.00176 * 0.39779 * 19 18 17 21 21 C 1.38234 * 119.99804 * 359.85571 * 20 19 18 22 22 C 1.38237 * 120.00389 * 359.95477 * 21 20 19 23 23 C 1.47060 * 87.88602 * 332.87796 * 11 10 9 24 24 H 0.97001 * 119.99464 * 0.02562 * 1 2 3 25 25 H 1.08995 * 113.41894 * 46.80202 * 9 7 2 26 26 H 1.09000 * 113.46355 * 24.87108 * 10 9 7 27 27 H 1.09003 * 113.46309 * 254.43554 * 10 9 7 28 28 H 0.96698 * 113.99995 * 299.99912 * 16 14 12 29 29 H 1.07998 * 119.99899 * 359.97438 * 18 17 14 30 30 H 1.08003 * 119.99666 * 180.23094 * 19 18 17 31 31 H 1.08001 * 120.00214 * 179.83469 * 20 19 18 32 32 H 1.08005 * 119.99881 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.00161 * 180.02562 * 22 21 20 34 34 H 1.09007 * 113.46761 * 141.90148 * 23 11 10 35 35 H 1.09003 * 113.46830 * 272.34116 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.1409 -2.5942 0.0010 11 7 5.1417 -2.0875 -0.9500 12 6 6.4153 -2.3894 -1.2710 13 8 6.9882 -3.2910 -0.6966 14 6 7.1275 -1.6074 -2.3446 15 1 6.5414 -1.6348 -3.2633 16 8 8.4125 -2.1855 -2.5819 17 6 7.2944 -0.1780 -1.8976 18 6 8.3692 0.1770 -1.1040 19 6 8.5244 1.4891 -0.6973 20 6 7.6005 2.4445 -1.0775 21 6 6.5230 2.0885 -1.8668 22 6 6.3698 0.7772 -2.2767 23 6 4.1414 -1.1061 -1.3959 24 1 -0.4849 0.8401 -0.0004 25 1 3.9444 -0.5093 0.7302 26 1 3.4916 -3.3618 -0.4199 27 1 4.5632 -2.8802 0.9644 28 1 8.9891 -2.1947 -1.8057 29 1 9.0889 -0.5701 -0.8039 30 1 9.3661 1.7672 -0.0804 31 1 7.7204 3.4691 -0.7576 32 1 5.8009 2.8348 -2.1634 33 1 5.5281 0.4991 -2.8937 34 1 4.5642 -0.1267 -1.6205 35 1 3.4923 -1.4775 -2.1889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:18 Heat of formation + Delta-G solvation = -16.434847 kcal Electronic energy + Delta-G solvation = -19736.976833 eV Core-core repulsion = 16701.494920 eV Total energy + Delta-G solvation = -3035.481913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42980 -38.93457 -37.75289 -35.98665 -32.75798 -31.90565 -30.96127 -29.76084 -27.04632 -25.31380 -24.84819 -22.65218 -21.86344 -20.35742 -18.75941 -17.80567 -17.35802 -17.01935 -16.17137 -15.68281 -15.27946 -14.96150 -14.44205 -14.20288 -13.68011 -13.48674 -13.28573 -13.06504 -12.80859 -12.70378 -12.01848 -11.85110 -11.78766 -11.62507 -11.19290 -10.95849 -10.91869 -10.58623 -10.05410 -9.86091 -9.44346 -9.33086 -8.95158 -8.77369 -8.58082 -8.13595 -6.26013 -4.29245 1.20501 1.33326 2.84361 3.13816 3.22356 3.26608 3.27857 3.68309 4.25173 4.35304 4.53194 4.72709 4.76883 4.92276 4.96642 5.04054 5.20208 5.40446 5.56942 5.66526 5.82586 5.88384 5.93433 6.02324 6.17327 6.22154 6.33166 6.35530 6.40819 6.44550 6.46044 6.89169 7.11605 7.39264 7.49072 8.20276 8.30959 8.45646 8.77350 9.34348 10.85840 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.008222 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.588093 B = 3404.522694 C = 4527.333183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.512 4.512 8 H 0.081 0.919 9 C -0.009 4.009 10 C 0.113 3.887 11 N -0.634 5.634 12 C 0.510 3.490 13 O -0.553 6.553 14 C 0.140 3.860 15 H 0.129 0.871 16 O -0.532 6.532 17 C -0.114 4.114 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.104 4.104 23 C 0.069 3.931 24 H 0.267 0.733 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.380 0.620 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.764 4.828 -4.096 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.549 4.549 8 H 0.099 0.901 9 C -0.029 4.029 10 C -0.009 4.009 11 N -0.368 5.368 12 C 0.298 3.702 13 O -0.433 6.433 14 C 0.077 3.923 15 H 0.147 0.853 16 O -0.338 6.338 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.053 4.053 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.230 0.770 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.085 0.915 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.883 4.335 -4.452 15.210 hybrid contribution 0.424 1.027 0.480 1.210 sum 14.306 5.362 -3.971 15.786 Atomic orbital electron populations 1.69891 1.06319 1.27327 1.49229 1.24995 0.94654 0.99069 0.93813 0.86929 0.80713 0.83765 0.78976 1.19774 1.21166 1.18517 1.20768 0.87411 0.94929 1.51824 0.90123 1.20875 0.96980 0.92933 0.92105 1.23168 0.86466 0.99585 0.91685 1.49906 1.09860 1.36925 1.40149 1.20754 0.81281 0.83986 0.84142 1.90668 1.66221 1.32122 1.54243 1.20608 0.85936 0.87642 0.98089 0.85325 1.86587 1.24161 1.83378 1.39646 1.20204 0.96636 0.94974 0.99630 1.20843 0.97554 0.96687 0.97370 1.21073 0.99465 0.92950 1.00106 1.21193 0.94727 0.99568 0.97928 1.21181 0.97969 0.96204 0.98128 1.21105 0.98036 0.92932 1.00072 1.24227 0.87186 0.91226 1.02648 0.92316 0.91589 0.89995 0.92000 0.77017 0.86144 0.85868 0.85926 0.85647 0.85075 0.91549 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.96 55.43 0.77 -24.50 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.46 27.43 -169.99 -4.66 14.80 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.66 6.21 56.52 0.35 -5.31 16 7 C -0.51 -13.00 9.38 -34.44 -0.32 -13.32 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C -0.01 -0.20 3.00 -91.25 -0.27 -0.48 16 10 C 0.11 2.23 8.18 -8.51 -0.07 2.16 16 11 N -0.63 -11.99 3.66 -185.22 -0.68 -12.66 16 12 C 0.51 9.44 7.40 -10.99 -0.08 9.36 16 13 O -0.55 -11.79 17.10 -14.31 -0.24 -12.04 16 14 C 0.14 2.10 3.47 -29.04 -0.10 2.00 16 15 H 0.13 1.75 8.05 -51.93 -0.42 1.34 16 16 O -0.53 -7.76 12.79 -55.09 -0.70 -8.47 16 17 C -0.11 -1.61 4.83 -104.62 -0.51 -2.12 16 18 C -0.11 -1.38 9.33 -39.58 -0.37 -1.74 16 19 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.10 -1.43 7.33 -39.58 -0.29 -1.72 16 23 C 0.07 1.30 7.12 -8.51 -0.06 1.24 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.07 1.47 6.50 -51.93 -0.34 1.13 16 26 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.38 4.66 7.14 45.56 0.33 4.99 16 29 H 0.12 1.34 6.62 -52.49 -0.35 0.99 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.13 1.69 6.72 -52.49 -0.35 1.33 16 34 H 0.07 1.16 4.09 -51.93 -0.21 0.94 16 35 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -30.56 295.01 -7.92 -38.48 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.48 Total: 8.06 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.36 Total: -8.11 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.10 Total: -37.16 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.95 Total: -20.50 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.66 Total: 14.80 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.56 -7.92 -38.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.044 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds