Wall clock time and date at job start Mon Mar 30 2020 04:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46675 * 269.99649 * 3 2 1 5 5 H 1.48502 * 109.47233 * 29.99670 * 3 2 1 6 6 H 1.48498 * 109.46897 * 150.00129 * 3 2 1 7 7 C 1.37879 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99442 * 180.02562 * 7 2 1 10 10 C 1.53503 * 114.20491 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98596 * 139.65156 * 10 9 7 12 12 C 1.34772 * 136.05397 * 152.84244 * 11 10 9 13 13 O 1.21286 * 120.00434 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00116 * 179.97438 * 12 11 10 15 15 H 1.09005 * 109.47074 * 305.00436 * 14 12 11 16 16 O 1.42894 * 109.47378 * 185.00243 * 14 12 11 17 17 C 1.50699 * 109.46802 * 65.00147 * 14 12 11 18 18 C 1.38237 * 119.99969 * 84.73050 * 17 14 12 19 19 C 1.38239 * 119.99695 * 179.80768 * 18 17 14 20 20 C 1.38235 * 120.00176 * 0.39779 * 19 18 17 21 21 C 1.38234 * 119.99804 * 359.85571 * 20 19 18 22 22 C 1.38237 * 120.00389 * 359.95477 * 21 20 19 23 23 C 1.47060 * 87.88602 * 332.87796 * 11 10 9 24 24 H 0.97001 * 119.99464 * 0.02562 * 1 2 3 25 25 H 1.08995 * 113.41894 * 46.80202 * 9 7 2 26 26 H 1.09000 * 113.46355 * 24.87108 * 10 9 7 27 27 H 1.09003 * 113.46309 * 254.43554 * 10 9 7 28 28 H 0.96698 * 113.99995 * 299.99912 * 16 14 12 29 29 H 1.07998 * 119.99899 * 359.97438 * 18 17 14 30 30 H 1.08003 * 119.99666 * 180.23094 * 19 18 17 31 31 H 1.08001 * 120.00214 * 179.83469 * 20 19 18 32 32 H 1.08005 * 119.99881 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.00161 * 180.02562 * 22 21 20 34 34 H 1.09007 * 113.46761 * 141.90148 * 23 11 10 35 35 H 1.09003 * 113.46830 * 272.34116 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.1409 -2.5942 0.0010 11 7 5.1417 -2.0875 -0.9500 12 6 6.4153 -2.3894 -1.2710 13 8 6.9882 -3.2910 -0.6966 14 6 7.1275 -1.6074 -2.3446 15 1 6.5414 -1.6348 -3.2633 16 8 8.4125 -2.1855 -2.5819 17 6 7.2944 -0.1780 -1.8976 18 6 8.3692 0.1770 -1.1040 19 6 8.5244 1.4891 -0.6973 20 6 7.6005 2.4445 -1.0775 21 6 6.5230 2.0885 -1.8668 22 6 6.3698 0.7772 -2.2767 23 6 4.1414 -1.1061 -1.3959 24 1 -0.4849 0.8401 -0.0004 25 1 3.9444 -0.5093 0.7302 26 1 3.4916 -3.3618 -0.4199 27 1 4.5632 -2.8802 0.9644 28 1 8.9891 -2.1947 -1.8057 29 1 9.0889 -0.5701 -0.8039 30 1 9.3661 1.7672 -0.0804 31 1 7.7204 3.4691 -0.7576 32 1 5.8009 2.8348 -2.1634 33 1 5.5281 0.4991 -2.8937 34 1 4.5642 -0.1267 -1.6205 35 1 3.4923 -1.4775 -2.1889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:17 Heat of formation + Delta-G solvation = -36.295132 kcal Electronic energy + Delta-G solvation = -19737.838039 eV Core-core repulsion = 16701.494920 eV Total energy + Delta-G solvation = -3036.343119 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75963 -40.14400 -39.15220 -37.24155 -34.69979 -33.02983 -31.88151 -31.31077 -28.44765 -26.86130 -26.45828 -23.58501 -22.97024 -21.91878 -20.21823 -19.25117 -18.81818 -18.47046 -17.47138 -16.78923 -16.65593 -16.37465 -15.78210 -15.48096 -15.08754 -14.81371 -14.63340 -14.31418 -14.29590 -13.84976 -13.54906 -13.38028 -13.15904 -12.78798 -12.63177 -12.52148 -12.06944 -11.85242 -11.81244 -11.52868 -11.22261 -10.81127 -10.67014 -9.91125 -9.69731 -9.66772 -8.27691 -6.36003 0.25003 0.41162 1.39394 1.41293 1.44346 1.53104 1.80981 2.38212 2.71799 3.01833 3.25452 3.35532 3.54036 3.80383 3.98356 4.03659 4.16930 4.22427 4.25904 4.42000 4.53074 4.58359 4.63677 4.68546 4.76173 4.85929 4.93391 5.05141 5.35979 5.46013 5.47545 5.54393 5.58947 6.00113 6.27556 6.35829 6.69279 6.74733 6.96603 7.31529 8.87579 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.008222 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.588093 B = 3404.522694 C = 4527.333183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.247 1.247 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.513 4.513 8 H 0.043 0.957 9 C -0.014 4.014 10 C 0.111 3.889 11 N -0.633 5.633 12 C 0.508 3.492 13 O -0.585 6.585 14 C 0.151 3.849 15 H 0.143 0.857 16 O -0.537 6.537 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.130 4.130 22 C -0.120 4.120 23 C 0.084 3.916 24 H 0.268 0.732 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.389 0.611 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.940 6.803 -4.636 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.176 4.176 3 Si 0.754 3.246 4 H -0.171 1.171 5 H -0.218 1.218 6 H -0.170 1.170 7 C -0.551 4.551 8 H 0.061 0.939 9 C -0.034 4.034 10 C -0.011 4.011 11 N -0.367 5.367 12 C 0.298 3.702 13 O -0.467 6.467 14 C 0.089 3.911 15 H 0.160 0.840 16 O -0.344 6.344 17 C -0.131 4.131 18 C -0.137 4.137 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.038 4.038 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.240 0.760 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.088 6.301 -5.007 17.989 hybrid contribution -0.234 0.330 0.703 0.811 sum 15.854 6.630 -4.304 17.715 Atomic orbital electron populations 1.70040 1.08334 1.28351 1.51391 1.25832 0.95295 1.02972 0.93457 0.85943 0.79567 0.78703 0.80371 1.17123 1.21827 1.17046 1.20908 0.89547 0.93541 1.51084 0.93920 1.20740 0.94411 0.94102 0.94127 1.23075 0.86937 0.98790 0.92326 1.49860 1.10080 1.36838 1.39910 1.21494 0.80694 0.83671 0.84298 1.90648 1.66725 1.33650 1.55634 1.20556 0.85726 0.87790 0.97077 0.83988 1.86570 1.24066 1.83447 1.40304 1.20170 0.97718 0.94234 1.00932 1.21125 0.97550 0.97796 0.97189 1.21432 1.00172 0.92379 0.99829 1.21583 0.94042 1.00922 0.96980 1.21482 0.98809 0.96151 0.98301 1.21272 0.98355 0.93506 1.00624 1.23996 0.86835 0.92357 1.00566 0.92293 0.91705 0.90112 0.91879 0.75961 0.85048 0.83323 0.83357 0.84169 0.84569 0.89417 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 13.96 21.45 0.30 -54.30 16 2 C 0.02 1.23 5.47 84.65 0.46 1.69 16 3 Si 0.93 38.96 27.43 68.60 1.88 40.84 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.25 -9.69 6.21 99.48 0.62 -9.07 16 7 C -0.51 -26.44 9.38 25.60 0.24 -26.20 16 8 H 0.04 2.46 8.06 -2.92 -0.02 2.44 16 9 C -0.01 -0.60 3.00 -11.20 -0.03 -0.64 16 10 C 0.11 4.37 8.18 83.18 0.68 5.05 16 11 N -0.63 -23.04 3.66 -858.31 -3.14 -26.19 16 12 C 0.51 18.06 7.40 87.66 0.65 18.71 16 13 O -0.58 -24.42 17.10 15.94 0.27 -24.15 16 14 C 0.15 4.22 3.47 29.10 0.10 4.32 16 15 H 0.14 3.54 8.05 -2.38 -0.02 3.52 16 16 O -0.54 -14.65 12.79 -129.99 -1.66 -16.31 16 17 C -0.13 -3.34 4.83 -19.86 -0.10 -3.44 16 18 C -0.12 -2.73 9.33 22.27 0.21 -2.52 16 19 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 20 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 21 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 22 C -0.12 -2.95 7.33 22.27 0.16 -2.78 16 23 C 0.08 3.00 7.12 83.18 0.59 3.59 16 24 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.06 2.77 6.50 -2.39 -0.02 2.76 16 26 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.39 8.88 7.14 -74.06 -0.53 8.35 16 29 H 0.13 2.60 6.62 -2.91 -0.02 2.58 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.14 3.08 6.72 -2.91 -0.02 3.07 16 34 H 0.09 2.78 4.09 -2.38 -0.01 2.77 16 35 H 0.09 3.19 8.10 -2.39 -0.02 3.17 16 Total: -1.00 -65.75 295.01 1.78 -63.97 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.50 Total: 25.25 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.64 Total: -9.11 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.84 Total: -80.49 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.39 Total: -40.46 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.88 Total: 40.84 kcal Total: -65.75 1.78 -63.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.673 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds