Wall clock time and date at job start Mon Mar 30 2020 04:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.39009 * 126.77315 * 269.69170 * 5 4 3 7 7 C 1.41495 * 126.02132 * 359.97438 * 6 5 4 8 8 H 1.08002 * 119.99622 * 0.02562 * 7 6 5 9 9 C 1.39733 * 119.99978 * 179.97438 * 7 6 5 10 10 N 1.30988 * 120.00275 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00035 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46943 * 90.00353 * 11 9 7 13 13 H 1.48498 * 109.47481 * 210.00575 * 11 9 7 14 14 H 1.48498 * 109.46880 * 330.00427 * 11 9 7 15 15 N 1.34846 * 107.95870 * 179.83134 * 6 5 4 16 16 N 1.28674 * 109.63417 * 0.43749 * 15 6 5 17 17 N 1.35021 * 126.77302 * 89.99922 * 5 4 3 18 18 C 1.46504 * 126.48920 * 0.02562 * 17 5 4 19 19 C 1.52992 * 109.47293 * 90.00168 * 18 17 5 20 20 F 1.39904 * 109.47403 * 174.99943 * 19 18 17 21 21 F 1.39902 * 109.47164 * 294.99690 * 19 18 17 22 22 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 23 23 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 24 24 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 0.97005 * 119.99868 * 179.97438 * 10 9 7 30 30 H 1.09006 * 109.46910 * 210.00269 * 18 17 5 31 31 H 1.09000 * 109.47349 * 329.99578 * 18 17 5 32 32 H 1.08998 * 109.47635 * 54.99628 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4921 3.3197 -1.1131 7 6 4.3284 2.9351 -2.4649 8 1 3.9011 1.9726 -2.7045 9 6 4.7187 3.8009 -3.4899 10 7 5.2365 4.9685 -3.1993 11 14 4.5020 3.2934 -5.2745 12 1 3.1653 3.7280 -5.7539 13 1 5.5565 3.9320 -6.1024 14 1 4.6118 1.8167 -5.3860 15 7 5.0059 4.4880 -0.6777 16 7 5.0139 4.5040 0.6089 17 7 4.4777 3.2990 1.0819 18 6 4.3070 2.9125 2.4847 19 6 5.5655 2.1917 2.9718 20 9 5.4495 1.9237 4.3400 21 9 5.7146 0.9893 2.2722 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 5.5078 5.5694 -3.9109 30 1 4.1418 3.8040 3.0896 31 1 3.4486 2.2470 2.5764 32 1 6.4365 2.8235 2.7980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:54 Heat of formation + Delta-G solvation = -66.761751 kcal Electronic energy + Delta-G solvation = -19994.382451 eV Core-core repulsion = 16434.781421 eV Total energy + Delta-G solvation = -3559.601030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.86149 -46.85883 -40.19387 -37.56029 -34.30194 -33.28310 -32.08050 -28.71736 -28.49410 -26.22698 -24.92663 -23.49250 -22.58870 -20.49697 -19.31425 -17.61626 -17.38067 -16.94555 -16.39310 -15.96155 -15.69929 -15.00471 -14.88200 -14.50742 -13.88382 -13.70979 -13.44274 -13.22041 -12.97876 -12.64222 -12.52555 -12.24127 -11.66393 -11.33914 -11.23575 -11.07821 -11.06546 -10.80191 -10.64193 -10.38624 -9.88876 -9.43113 -9.36781 -9.05152 -8.67059 -7.57655 -6.48307 -4.28788 2.49659 3.09326 3.15791 3.18177 3.22728 3.94654 4.05661 4.06772 4.22388 4.35956 4.55082 4.91484 5.31542 5.36196 5.40093 5.45565 5.48494 5.54785 5.71885 5.79051 5.82262 6.05467 6.30070 6.57908 6.76493 6.92729 7.26033 7.39441 7.44052 7.90017 8.32723 8.67185 8.96941 9.99054 10.47871 Molecular weight = 261.10amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.007638 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.870530 B = 3665.058468 C = 4948.627920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.067 3.933 4 C -0.013 4.013 5 C -0.114 4.114 6 C 0.161 3.839 7 C -0.446 4.446 8 H 0.085 0.915 9 C 0.073 3.927 10 N -0.773 5.773 11 Si 0.908 3.092 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.263 1.263 15 N -0.217 5.217 16 N -0.123 5.123 17 N -0.385 5.385 18 C 0.096 3.904 19 C 0.248 3.752 20 F -0.205 7.205 21 F -0.196 7.196 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.274 0.726 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 -6.057 7.627 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.053 4.053 5 C -0.243 4.243 6 C 0.033 3.967 7 C -0.482 4.482 8 H 0.103 0.897 9 C -0.147 4.147 10 N -0.398 5.398 11 Si 0.733 3.267 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.187 1.187 15 N -0.090 5.090 16 N -0.099 5.099 17 N -0.181 5.181 18 C -0.031 4.031 19 C 0.192 3.808 20 F -0.186 7.186 21 F -0.177 7.177 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.080 -4.652 7.927 10.056 hybrid contribution -0.753 -1.006 -0.849 1.517 sum -4.833 -5.658 7.078 10.270 Atomic orbital electron populations 1.22670 0.81808 1.02081 0.99787 1.87840 1.19086 1.29059 1.95438 1.22674 0.94651 0.83475 1.00217 1.19442 0.91070 0.91435 1.03332 1.21047 1.18332 0.97881 0.87079 1.18965 0.96560 0.87838 0.93362 1.18609 1.39188 1.02932 0.87425 0.89734 1.25815 0.93495 0.94384 1.00997 1.70002 1.29149 1.06521 1.34168 0.86314 0.78532 0.79800 0.82037 1.19725 1.20406 1.18697 1.75114 1.15329 1.19265 0.99300 1.81541 1.20087 1.00820 1.07456 1.49169 1.49827 1.15599 1.03539 1.22250 0.96765 1.01675 0.82382 1.22440 1.01927 0.83490 0.72928 1.92969 1.97457 1.94946 1.33267 1.93007 1.96954 1.49087 1.78654 0.94602 0.94136 0.90105 0.92283 0.94497 0.91714 0.89453 0.91520 0.86654 0.87964 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.40 -6.44 10.70 -35.23 -0.38 -6.81 16 3 C 0.07 1.15 5.92 37.16 0.22 1.37 16 4 C -0.01 -0.25 5.45 -27.89 -0.15 -0.40 16 5 C -0.11 -2.55 6.37 -80.91 -0.52 -3.06 16 6 C 0.16 4.28 6.72 -85.02 -0.57 3.70 16 7 C -0.45 -11.78 9.11 -37.78 -0.34 -12.13 16 8 H 0.08 2.09 7.29 -52.49 -0.38 1.71 16 9 C 0.07 1.88 5.49 -17.35 -0.10 1.79 16 10 N -0.77 -21.22 11.92 55.54 0.66 -20.55 16 11 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 15 N -0.22 -6.03 10.56 32.05 0.34 -5.70 16 16 N -0.12 -3.02 13.74 60.35 0.83 -2.19 16 17 N -0.38 -7.97 3.62 -56.17 -0.20 -8.18 16 18 C 0.10 1.44 6.35 -4.04 -0.03 1.41 16 19 C 0.25 3.56 5.55 37.15 0.21 3.76 16 20 F -0.20 -2.76 17.34 2.25 0.04 -2.72 16 21 F -0.20 -3.29 15.98 2.25 0.04 -3.25 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.15 6.46 -51.93 -0.34 0.82 16 28 H 0.09 1.73 7.55 -51.93 -0.39 1.33 16 29 H 0.27 6.90 8.30 -40.82 -0.34 6.57 16 30 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.10 1.38 7.77 -51.93 -0.40 0.98 16 32 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 291.06 15.07 4.39 4.39 Total: -1.00 -30.66 291.06 -3.09 -33.74 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.61 Total: -0.82 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.16 Total: -2.03 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.63 Total: -36.62 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.38 Total: -6.81 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.08 Total: -5.97 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.66 -3.09 -33.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.017 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds