Wall clock time and date at job start Mon Mar 30 2020 04:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.39009 * 126.77315 * 269.69170 * 5 4 3 7 7 C 1.41495 * 126.02132 * 359.97438 * 6 5 4 8 8 H 1.08002 * 119.99622 * 0.02562 * 7 6 5 9 9 C 1.39733 * 119.99978 * 179.97438 * 7 6 5 10 10 N 1.30988 * 120.00275 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00035 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46943 * 90.00353 * 11 9 7 13 13 H 1.48498 * 109.47481 * 210.00575 * 11 9 7 14 14 H 1.48498 * 109.46880 * 330.00427 * 11 9 7 15 15 N 1.34846 * 107.95870 * 179.83134 * 6 5 4 16 16 N 1.28674 * 109.63417 * 0.43749 * 15 6 5 17 17 N 1.35021 * 126.77302 * 89.99922 * 5 4 3 18 18 C 1.46504 * 126.48920 * 0.02562 * 17 5 4 19 19 C 1.52992 * 109.47293 * 90.00168 * 18 17 5 20 20 F 1.39904 * 109.47403 * 174.99943 * 19 18 17 21 21 F 1.39902 * 109.47164 * 294.99690 * 19 18 17 22 22 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 23 23 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 24 24 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 0.97005 * 119.99868 * 179.97438 * 10 9 7 30 30 H 1.09006 * 109.46910 * 210.00269 * 18 17 5 31 31 H 1.09000 * 109.47349 * 329.99578 * 18 17 5 32 32 H 1.08998 * 109.47635 * 54.99628 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4921 3.3197 -1.1131 7 6 4.3284 2.9351 -2.4649 8 1 3.9011 1.9726 -2.7045 9 6 4.7187 3.8009 -3.4899 10 7 5.2365 4.9685 -3.1993 11 14 4.5020 3.2934 -5.2745 12 1 3.1653 3.7280 -5.7539 13 1 5.5565 3.9320 -6.1024 14 1 4.6118 1.8167 -5.3860 15 7 5.0059 4.4880 -0.6777 16 7 5.0139 4.5040 0.6089 17 7 4.4777 3.2990 1.0819 18 6 4.3070 2.9125 2.4847 19 6 5.5655 2.1917 2.9718 20 9 5.4495 1.9237 4.3400 21 9 5.7146 0.9893 2.2722 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 5.5078 5.5694 -3.9109 30 1 4.1418 3.8040 3.0896 31 1 3.4486 2.2470 2.5764 32 1 6.4365 2.8235 2.7980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:53 Heat of formation + Delta-G solvation = -87.785478 kcal Electronic energy + Delta-G solvation = -19995.294108 eV Core-core repulsion = 16434.781421 eV Total energy + Delta-G solvation = -3560.512687 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.06843 -48.07460 -42.01744 -38.81301 -35.98103 -35.06370 -33.66820 -30.42838 -30.00694 -27.47267 -26.62935 -24.90746 -24.04793 -22.31991 -20.94519 -19.30593 -18.62953 -18.25745 -17.82938 -17.24985 -16.98646 -16.76154 -16.37895 -15.84046 -15.32903 -15.13588 -14.92917 -14.50473 -14.44019 -14.12095 -13.97822 -13.57669 -12.97215 -12.90210 -12.86359 -12.79597 -12.38942 -12.21304 -12.14851 -12.03829 -11.69798 -11.21983 -10.92006 -10.58871 -10.43469 -9.46887 -8.35637 -6.24712 0.74972 1.43128 1.44988 1.58001 1.64455 2.25299 2.32232 2.68880 2.87531 3.17188 3.35422 3.48233 3.72092 4.03592 4.06687 4.16506 4.24585 4.34878 4.51267 4.56015 4.63700 4.73278 4.86332 4.97627 5.05375 5.10952 5.45459 5.52469 6.21068 6.23454 6.36752 6.78556 7.04252 8.13469 8.63209 Molecular weight = 261.10amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.007638 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.870530 B = 3665.058468 C = 4948.627920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.011 4.011 5 C -0.081 4.081 6 C 0.119 3.881 7 C -0.476 4.476 8 H 0.091 0.909 9 C 0.025 3.975 10 N -0.821 5.821 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.254 1.254 15 N -0.269 5.269 16 N -0.148 5.148 17 N -0.367 5.367 18 C 0.083 3.917 19 C 0.257 3.743 20 F -0.194 7.194 21 F -0.209 7.209 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.104 0.896 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.275 0.725 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -7.752 8.673 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.001 3.999 4 C -0.051 4.051 5 C -0.214 4.214 6 C -0.012 4.012 7 C -0.512 4.512 8 H 0.109 0.891 9 C -0.190 4.190 10 N -0.448 5.448 11 Si 0.803 3.197 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.178 1.178 15 N -0.140 5.140 16 N -0.123 5.123 17 N -0.162 5.162 18 C -0.040 4.040 19 C 0.201 3.799 20 F -0.176 7.176 21 F -0.191 7.191 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.123 0.877 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.145 0.855 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.373 -6.335 9.046 12.281 hybrid contribution -0.445 -0.631 -0.898 1.184 sum -5.818 -6.966 8.148 12.197 Atomic orbital electron populations 1.22949 0.79488 1.04009 1.00669 1.87802 1.21531 1.28007 1.95563 1.22368 0.93084 0.84234 1.00197 1.19502 0.92597 0.89199 1.03793 1.21553 1.14979 0.98209 0.86672 1.19467 0.98229 0.88648 0.94835 1.18923 1.40486 1.03610 0.88206 0.89117 1.26711 0.92787 0.94095 1.05407 1.70139 1.31224 1.07962 1.35479 0.85202 0.78542 0.79643 0.76274 1.19020 1.20146 1.17790 1.75074 1.17544 1.20706 1.00626 1.81413 1.21843 1.02368 1.06633 1.49497 1.46976 1.14189 1.05565 1.22775 0.98121 1.03742 0.79399 1.22277 1.01618 0.82799 0.73176 1.92997 1.97404 1.94833 1.32329 1.92988 1.96990 1.50000 1.79103 0.93071 0.93900 0.87743 0.93938 0.92957 0.89891 0.90297 0.91469 0.83726 0.85541 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.23 10.70 -148.98 -1.59 -13.83 16 3 C 0.08 2.54 5.92 71.98 0.43 2.96 16 4 C -0.01 -0.41 5.45 29.85 0.16 -0.24 16 5 C -0.08 -3.57 6.37 42.25 0.27 -3.30 16 6 C 0.12 6.46 6.72 39.67 0.27 6.72 16 7 C -0.48 -25.78 9.11 23.43 0.21 -25.56 16 8 H 0.09 4.57 7.29 -2.91 -0.02 4.54 16 9 C 0.02 1.31 5.49 85.18 0.47 1.78 16 10 N -0.82 -46.87 11.92 21.79 0.26 -46.61 16 11 Si 0.98 40.01 29.56 68.60 2.03 42.04 16 12 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 13 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 15 N -0.27 -15.43 10.56 -52.51 -0.55 -15.98 16 16 N -0.15 -7.30 13.74 37.02 0.51 -6.79 16 17 N -0.37 -14.74 3.62 -331.64 -1.20 -15.94 16 18 C 0.08 2.25 6.35 86.38 0.55 2.80 16 19 C 0.26 6.67 5.55 71.98 0.40 7.06 16 20 F -0.19 -4.60 17.34 44.97 0.78 -3.82 16 21 F -0.21 -6.52 15.98 44.97 0.72 -5.80 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.73 6.46 -2.39 -0.02 2.71 16 28 H 0.08 3.05 7.55 -2.39 -0.02 3.03 16 29 H 0.28 14.48 8.30 -92.70 -0.77 13.71 16 30 H 0.14 3.15 8.14 -2.38 -0.02 3.13 16 31 H 0.13 2.89 7.77 -2.39 -0.02 2.87 16 32 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -68.39 291.06 6.09 -62.30 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.14 Total: 10.43 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 4.00 Total: -6.00 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -0.98 Total: -85.32 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.59 Total: -13.83 kcal Atomic # 9 Polarization: -11.12 SS G_CDS: 1.50 Total: -9.62 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -68.39 6.09 -62.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.481 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds