Wall clock time and date at job start Mon Mar 30 2020 04:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30979 * 1 3 3 Si 1.86805 * 119.99853 * 2 1 4 4 H 1.48504 * 109.46670 * 270.00043 * 3 2 1 5 5 H 1.48504 * 109.47278 * 29.99754 * 3 2 1 6 6 H 1.48494 * 109.47223 * 149.99838 * 3 2 1 7 7 C 1.39737 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.41491 * 119.99463 * 0.02562 * 7 2 1 10 10 N 1.34850 * 126.02561 * 0.19311 * 9 7 2 11 11 N 1.28667 * 109.63548 * 180.27471 * 10 9 7 12 12 N 1.40130 * 108.93534 * 359.72501 * 11 10 9 13 13 C 1.46502 * 126.49086 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47331 * 270.02958 * 13 12 11 15 15 C 1.52991 * 109.47480 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47493 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.47059 * 179.97438 * 16 15 14 18 18 C 1.35015 * 107.01331 * 0.02562 * 12 11 10 19 19 C 1.50703 * 126.76888 * 179.97438 * 18 12 11 20 20 F 1.39905 * 109.47157 * 149.99729 * 19 18 12 21 21 F 1.39900 * 109.47159 * 30.00029 * 19 18 12 22 22 H 0.97004 * 120.00292 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46953 * 30.03047 * 13 12 11 24 24 H 1.08996 * 109.46778 * 150.02756 * 13 12 11 25 25 H 1.09009 * 109.46715 * 300.00042 * 14 13 12 26 26 H 1.09000 * 109.47148 * 59.99419 * 14 13 12 27 27 H 1.08997 * 109.47030 * 299.99997 * 15 14 13 28 28 H 1.09004 * 109.47071 * 59.99421 * 15 14 13 29 29 H 1.09001 * 109.46776 * 300.00274 * 16 15 14 30 30 H 1.08992 * 109.46799 * 59.99744 * 16 15 14 31 31 H 0.96699 * 113.99225 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47113 * 269.99827 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.4912 2.0464 -1.4002 5 1 1.4412 2.6528 0.7000 6 1 3.5413 1.4403 0.7000 7 6 2.0086 -1.2101 0.0005 8 1 3.0885 -1.2101 0.0010 9 6 1.3011 -2.4354 0.0005 10 7 -0.0399 -2.5770 -0.0036 11 7 -0.3427 -3.8275 0.0036 12 7 0.8385 -4.5814 0.0067 13 6 0.9393 -6.0429 0.0153 14 6 0.9752 -6.5432 1.4607 15 6 1.0810 -8.0694 1.4697 16 6 1.1176 -8.5698 2.9151 17 8 1.2159 -9.9954 2.9234 18 6 1.8661 -3.7056 0.0016 19 6 3.3357 -4.0393 0.0029 20 9 4.0432 -3.0322 -0.6624 21 9 3.5374 -5.2601 -0.6499 22 1 -0.4851 0.8401 -0.0004 23 1 0.0760 -6.4696 -0.4956 24 1 1.8518 -6.3471 -0.4973 25 1 1.8384 -6.1165 1.9715 26 1 0.0627 -6.2389 1.9733 27 1 0.2181 -8.4965 0.9587 28 1 1.9938 -8.3734 0.9571 29 1 1.9808 -8.1426 3.4257 30 1 0.2051 -8.2658 3.4279 31 1 1.2435 -10.3825 3.8091 32 1 3.6904 -4.1140 1.0310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:21 Heat of formation + Delta-G solvation = -75.134441 kcal Electronic energy + Delta-G solvation = -19751.965071 eV Core-core repulsion = 16192.000975 eV Total energy + Delta-G solvation = -3559.964097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.32889 -46.34905 -40.06745 -37.40128 -35.19805 -33.48979 -31.96887 -30.24580 -27.97071 -26.29888 -24.35945 -23.44704 -21.28863 -20.45313 -19.89468 -17.48414 -17.41586 -16.85717 -16.40201 -15.96701 -15.84597 -14.95061 -14.62493 -14.46967 -14.13992 -13.69350 -13.26569 -12.95993 -12.80099 -12.44875 -12.07806 -11.90224 -11.86158 -11.37308 -11.22588 -11.17508 -11.06684 -10.77553 -10.46868 -10.31264 -10.13478 -9.84068 -9.42100 -9.10406 -8.67310 -7.69244 -6.54848 -4.37179 2.50788 3.09875 3.15324 3.18999 3.38182 4.03251 4.08737 4.12591 4.47330 4.81219 4.92762 5.05316 5.13429 5.20743 5.32663 5.40557 5.47737 5.57970 5.65217 5.67313 5.75016 5.93257 6.12767 6.30427 6.64395 6.93949 7.16385 7.32976 7.41367 7.93191 8.32521 8.59894 8.89784 9.96742 10.40406 Molecular weight = 261.10amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.005243 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.331466 B = 5339.540231 C = 5838.594694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.187 3.813 10 N -0.230 5.230 11 N -0.096 5.096 12 N -0.363 5.363 13 C 0.127 3.873 14 C -0.130 4.130 15 C -0.116 4.116 16 C 0.076 3.924 17 O -0.577 6.577 18 C -0.228 4.228 19 C 0.377 3.623 20 F -0.190 7.190 21 F -0.218 7.218 22 H 0.276 0.724 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.378 0.622 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -11.063 5.016 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.112 0.888 9 C 0.059 3.941 10 N -0.104 5.104 11 N -0.074 5.074 12 N -0.162 5.162 13 C 0.003 3.997 14 C -0.169 4.169 15 C -0.154 4.154 16 C -0.002 4.002 17 O -0.382 6.382 18 C -0.356 4.356 19 C 0.321 3.679 20 F -0.171 7.171 21 F -0.199 7.199 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.224 0.776 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.026 -10.868 4.318 12.080 hybrid contribution 1.483 0.591 0.524 1.680 sum 4.509 -10.278 4.841 12.223 Atomic orbital electron populations 1.70017 1.07021 1.28462 1.33354 1.25909 0.94885 1.01052 0.93093 0.86235 0.80200 0.80655 0.79150 1.19508 1.20345 1.18579 1.18953 0.94533 0.87761 1.46348 0.88755 1.18931 0.87510 0.91143 0.96498 1.75194 1.13780 1.05258 1.16168 1.81437 1.05614 0.98844 1.21488 1.49189 1.05134 1.05291 1.56584 1.21649 1.04239 0.76751 0.97037 1.21868 1.03323 0.94264 0.97446 1.21421 1.03501 0.94644 0.95847 1.22197 0.99797 0.80502 0.97693 1.86470 1.97401 1.20718 1.33641 1.21456 0.89383 0.92172 1.32591 1.19134 0.86872 0.70695 0.91191 1.92973 1.79459 1.61164 1.83519 1.92840 1.95811 1.46486 1.84786 0.91313 0.89630 0.88508 0.91434 0.90940 0.90922 0.90895 0.93559 0.93541 0.77559 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.01 11.92 55.54 0.66 -20.35 16 2 C 0.07 1.87 5.49 -17.36 -0.10 1.77 16 3 Si 0.91 19.18 29.56 -169.99 -5.02 14.16 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.44 -11.86 8.81 -37.78 -0.33 -12.19 16 8 H 0.09 2.39 6.15 -52.49 -0.32 2.07 16 9 C 0.19 5.11 6.70 -85.01 -0.57 4.54 16 10 N -0.23 -6.56 10.56 32.05 0.34 -6.22 16 11 N -0.10 -2.47 13.74 60.35 0.83 -1.64 16 12 N -0.36 -7.97 3.63 -56.17 -0.20 -8.17 16 13 C 0.13 2.06 6.22 -4.04 -0.03 2.04 16 14 C -0.13 -1.76 5.54 -26.74 -0.15 -1.90 16 15 C -0.12 -1.30 5.58 -26.73 -0.15 -1.45 16 16 C 0.08 0.76 7.05 37.16 0.26 1.02 16 17 O -0.58 -5.88 13.66 -35.23 -0.48 -6.36 16 18 C -0.23 -5.32 6.83 -80.90 -0.55 -5.87 16 19 C 0.38 7.24 5.69 36.01 0.20 7.44 16 20 F -0.19 -3.97 15.05 2.25 0.03 -3.94 16 21 F -0.22 -3.88 14.71 2.25 0.03 -3.84 16 22 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 23 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.10 1.49 5.70 -51.93 -0.30 1.20 16 25 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.38 2.04 9.12 45.56 0.42 2.46 16 32 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -32.20 286.46 -3.62 -35.83 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.72 Total: 0.83 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.41 Total: -4.60 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 1.63 Total: -36.39 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.48 Total: -6.36 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.07 Total: -7.78 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.20 -3.62 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.308 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds