Wall clock time and date at job start Mon Mar 30 2020 04:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30979 * 1 3 3 Si 1.86805 * 119.99853 * 2 1 4 4 H 1.48504 * 109.46670 * 270.00043 * 3 2 1 5 5 H 1.48504 * 109.47278 * 29.99754 * 3 2 1 6 6 H 1.48494 * 109.47223 * 149.99838 * 3 2 1 7 7 C 1.39737 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.41491 * 119.99463 * 0.02562 * 7 2 1 10 10 N 1.34850 * 126.02561 * 0.19311 * 9 7 2 11 11 N 1.28667 * 109.63548 * 180.27471 * 10 9 7 12 12 N 1.40130 * 108.93534 * 359.72501 * 11 10 9 13 13 C 1.46502 * 126.49086 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47331 * 270.02958 * 13 12 11 15 15 C 1.52991 * 109.47480 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47493 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.47059 * 179.97438 * 16 15 14 18 18 C 1.35015 * 107.01331 * 0.02562 * 12 11 10 19 19 C 1.50703 * 126.76888 * 179.97438 * 18 12 11 20 20 F 1.39905 * 109.47157 * 149.99729 * 19 18 12 21 21 F 1.39900 * 109.47159 * 30.00029 * 19 18 12 22 22 H 0.97004 * 120.00292 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46953 * 30.03047 * 13 12 11 24 24 H 1.08996 * 109.46778 * 150.02756 * 13 12 11 25 25 H 1.09009 * 109.46715 * 300.00042 * 14 13 12 26 26 H 1.09000 * 109.47148 * 59.99419 * 14 13 12 27 27 H 1.08997 * 109.47030 * 299.99997 * 15 14 13 28 28 H 1.09004 * 109.47071 * 59.99421 * 15 14 13 29 29 H 1.09001 * 109.46776 * 300.00274 * 16 15 14 30 30 H 1.08992 * 109.46799 * 59.99744 * 16 15 14 31 31 H 0.96699 * 113.99225 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47113 * 269.99827 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.4912 2.0464 -1.4002 5 1 1.4412 2.6528 0.7000 6 1 3.5413 1.4403 0.7000 7 6 2.0086 -1.2101 0.0005 8 1 3.0885 -1.2101 0.0010 9 6 1.3011 -2.4354 0.0005 10 7 -0.0399 -2.5770 -0.0036 11 7 -0.3427 -3.8275 0.0036 12 7 0.8385 -4.5814 0.0067 13 6 0.9393 -6.0429 0.0153 14 6 0.9752 -6.5432 1.4607 15 6 1.0810 -8.0694 1.4697 16 6 1.1176 -8.5698 2.9151 17 8 1.2159 -9.9954 2.9234 18 6 1.8661 -3.7056 0.0016 19 6 3.3357 -4.0393 0.0029 20 9 4.0432 -3.0322 -0.6624 21 9 3.5374 -5.2601 -0.6499 22 1 -0.4851 0.8401 -0.0004 23 1 0.0760 -6.4696 -0.4956 24 1 1.8518 -6.3471 -0.4973 25 1 1.8384 -6.1165 1.9715 26 1 0.0627 -6.2389 1.9733 27 1 0.2181 -8.4965 0.9587 28 1 1.9938 -8.3734 0.9571 29 1 1.9808 -8.1426 3.4257 30 1 0.2051 -8.2658 3.4279 31 1 1.2435 -10.3825 3.8091 32 1 3.6904 -4.1140 1.0310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:21 Heat of formation + Delta-G solvation = -99.377388 kcal Electronic energy + Delta-G solvation = -19753.016324 eV Core-core repulsion = 16192.000975 eV Total energy + Delta-G solvation = -3561.015350 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.88557 -47.91801 -41.95493 -38.24025 -36.51439 -35.28250 -33.48928 -32.05604 -29.39513 -27.91646 -26.19848 -24.70964 -22.42602 -22.17573 -21.60962 -19.24424 -18.42135 -18.20111 -17.96598 -17.61190 -16.93274 -16.67211 -16.31926 -15.93856 -15.35260 -14.93978 -14.76725 -14.54920 -14.30764 -14.06962 -13.44045 -13.25055 -13.08744 -12.97536 -12.85570 -12.72955 -12.32931 -12.05729 -11.99437 -11.79559 -11.61053 -11.24445 -10.99796 -10.87231 -10.49794 -9.63336 -8.42660 -6.35321 0.67044 1.43810 1.45018 1.59548 1.74753 2.19027 2.30255 2.94143 3.25892 3.39531 3.44580 3.67384 3.88620 3.92597 4.10975 4.15901 4.28491 4.41894 4.50667 4.55875 4.73000 4.75996 4.89924 5.03224 5.14820 5.26707 5.35127 5.43040 6.18867 6.34515 6.68335 6.89903 6.95652 8.05344 8.55483 Molecular weight = 261.10amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.005243 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.331466 B = 5339.540231 C = 5838.594694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.024 3.976 3 Si 0.989 3.011 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.473 4.473 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.281 5.281 11 N -0.129 5.129 12 N -0.343 5.343 13 C 0.113 3.887 14 C -0.117 4.117 15 C -0.110 4.110 16 C 0.076 3.924 17 O -0.594 6.594 18 C -0.206 4.206 19 C 0.379 3.621 20 F -0.198 7.198 21 F -0.206 7.206 22 H 0.279 0.721 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.398 0.602 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 -12.356 5.693 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.508 4.508 8 H 0.121 0.879 9 C 0.016 3.984 10 N -0.153 5.153 11 N -0.106 5.106 12 N -0.141 5.141 13 C -0.008 4.008 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.001 4.001 17 O -0.403 6.403 18 C -0.339 4.339 19 C 0.324 3.676 20 F -0.180 7.180 21 F -0.187 7.187 22 H 0.089 0.911 23 H 0.116 0.884 24 H 0.131 0.869 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.248 0.752 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.009 -12.236 5.011 14.139 hybrid contribution 0.904 0.688 0.299 1.175 sum 5.913 -11.548 5.310 14.018 Atomic orbital electron populations 1.70150 1.08878 1.29437 1.35418 1.26866 0.95603 1.04671 0.92117 0.85103 0.79048 0.75723 0.79192 1.19243 1.19788 1.17248 1.19284 0.95028 0.88489 1.48020 0.87890 1.19481 0.87740 0.93011 0.98172 1.75145 1.14975 1.06536 1.18605 1.81333 1.06827 0.98590 1.23812 1.49695 1.04161 1.07315 1.52905 1.22186 1.05638 0.73396 0.99599 1.21716 1.02942 0.96022 0.94916 1.21332 1.03803 0.92521 0.97126 1.22140 1.00568 0.80718 0.96712 1.86407 1.97429 1.20655 1.35781 1.22221 0.91764 0.91467 1.28410 1.19463 0.84142 0.70705 0.93318 1.92958 1.79244 1.61786 1.83962 1.92860 1.95499 1.45502 1.84872 0.91135 0.88422 0.86888 0.91035 0.92097 0.90912 0.90332 0.92483 0.93127 0.75198 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.38 11.92 21.79 0.26 -46.12 16 2 C 0.02 1.25 5.49 85.18 0.47 1.72 16 3 Si 0.99 39.67 29.56 68.60 2.03 41.70 16 4 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 7 C -0.47 -25.74 8.81 23.43 0.21 -25.53 16 8 H 0.10 5.19 6.15 -2.91 -0.02 5.17 16 9 C 0.15 8.12 6.70 39.67 0.27 8.38 16 10 N -0.28 -16.60 10.56 -52.51 -0.55 -17.16 16 11 N -0.13 -6.76 13.74 37.02 0.51 -6.25 16 12 N -0.34 -14.76 3.63 -331.63 -1.20 -15.96 16 13 C 0.11 3.43 6.22 86.38 0.54 3.96 16 14 C -0.12 -2.88 5.54 30.59 0.17 -2.72 16 15 C -0.11 -2.16 5.58 30.59 0.17 -1.99 16 16 C 0.08 1.32 7.05 71.98 0.51 1.82 16 17 O -0.59 -10.47 13.66 -148.98 -2.04 -12.50 16 18 C -0.21 -9.41 6.83 42.26 0.29 -9.12 16 19 C 0.38 13.44 5.69 71.24 0.41 13.84 16 20 F -0.20 -7.85 15.05 44.97 0.68 -7.17 16 21 F -0.21 -6.58 14.71 44.97 0.66 -5.92 16 22 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 23 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 24 H 0.11 3.12 5.70 -2.39 -0.01 3.11 16 25 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.40 3.22 9.12 -74.06 -0.68 2.54 16 32 H 0.15 4.11 8.14 -2.38 -0.02 4.09 16 Total: -1.00 -71.81 286.46 3.85 -67.96 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.49 Total: 11.05 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 3.02 Total: -9.62 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -0.99 Total: -85.49 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -2.04 Total: -12.50 kcal Atomic # 9 Polarization: -14.43 SS G_CDS: 1.34 Total: -13.09 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -71.81 3.85 -67.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.418 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds