Wall clock time and date at job start Mon Mar 30 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47203 * 2 1 4 4 H 1.09004 * 109.46990 * 302.90903 * 3 2 1 5 5 C 1.50694 * 109.47394 * 182.90374 * 3 2 1 6 6 H 1.07998 * 120.00384 * 239.99918 * 5 3 2 7 7 C 1.37880 * 119.99692 * 59.99889 * 5 3 2 8 8 N 1.31519 * 119.99821 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00305 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47214 * 270.00232 * 9 7 5 11 11 H 1.48498 * 109.46903 * 29.99856 * 9 7 5 12 12 H 1.48493 * 109.47374 * 149.99652 * 9 7 5 13 13 N 1.46904 * 109.47154 * 62.90253 * 3 2 1 14 14 C 1.46900 * 110.99607 * 41.23370 * 13 3 2 15 15 C 1.46896 * 111.00042 * 277.27970 * 13 3 2 16 16 H 1.09000 * 110.01480 * 61.46629 * 15 13 3 17 17 C 1.53874 * 110.03099 * 300.08540 * 15 13 3 18 18 C 1.54191 * 108.69526 * 193.57482 * 17 15 13 19 19 S 1.82921 * 105.10558 * 27.83699 * 18 17 15 20 20 O 1.42098 * 109.35076 * 244.51592 * 19 18 17 21 21 O 1.42095 * 109.35393 * 111.31424 * 19 18 17 22 22 C 1.55053 * 110.02614 * 182.84219 * 15 13 3 23 23 H 1.08993 * 109.46956 * 283.19395 * 1 2 3 24 24 H 1.09004 * 109.46868 * 43.19219 * 1 2 3 25 25 H 1.08999 * 109.46929 * 163.18992 * 1 2 3 26 26 H 1.08995 * 109.47252 * 240.00281 * 2 1 3 27 27 H 1.09000 * 109.47011 * 119.99659 * 2 1 3 28 28 H 0.97004 * 119.99661 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47527 * 59.99555 * 14 13 3 30 30 H 1.08998 * 109.47002 * 180.02562 * 14 13 3 31 31 H 1.09002 * 109.47180 * 299.99403 * 14 13 3 32 32 H 1.09001 * 109.64314 * 313.38912 * 17 15 13 33 33 H 1.08999 * 109.64358 * 73.67310 * 17 15 13 34 34 H 1.08992 * 110.27408 * 268.94480 * 18 17 15 35 35 H 1.08998 * 110.42835 * 146.80283 * 18 17 15 36 36 H 1.08992 * 110.79415 * 279.99413 * 22 15 13 37 37 H 1.08998 * 110.78479 * 43.45831 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6348 1.9712 -0.8628 5 6 3.5453 1.4432 -0.0720 6 1 4.1236 1.8973 0.7190 7 6 4.1842 0.8639 -1.1478 8 7 5.4979 0.8641 -1.2104 9 14 3.1841 0.0791 -2.5163 10 1 2.9514 -1.3532 -2.2006 11 1 1.8792 0.7772 -2.6387 12 1 3.9264 0.1892 -3.7977 13 7 1.6085 2.1145 1.2330 14 6 1.7408 1.2224 2.3926 15 6 0.2326 2.6133 1.1068 16 1 -0.4514 1.7821 0.9355 17 6 0.1410 3.6189 -0.0544 18 6 -1.2000 4.3728 0.0494 19 16 -1.6166 4.3617 1.8305 20 8 -2.8053 3.6096 2.0314 21 8 -1.5164 5.6822 2.3458 22 6 -0.1743 3.3797 2.3918 23 1 -0.3633 0.2345 1.0005 24 1 -0.3633 0.7493 -0.7034 25 1 -0.3633 -0.9837 -0.2972 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.9474 0.4569 -1.9674 29 1 2.7830 0.9233 2.5039 30 1 1.4142 1.7447 3.2918 31 1 1.1228 0.3372 2.2424 32 1 0.9658 4.3286 0.0096 33 1 0.1908 3.0870 -1.0045 34 1 -1.9698 3.8547 -0.5225 35 1 -1.0893 5.3969 -0.3070 36 1 -0.4625 2.6857 3.1813 37 1 0.6325 4.0327 2.7246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036869990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:02 Heat of formation + Delta-G solvation = -44.514207 kcal Electronic energy + Delta-G solvation = -19222.740331 eV Core-core repulsion = 16321.484757 eV Total energy + Delta-G solvation = -2901.255574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.03800 -37.02277 -36.02775 -34.87944 -32.45128 -31.45998 -29.45611 -27.67010 -26.34112 -23.38586 -22.76994 -20.86655 -19.30479 -18.77852 -17.13006 -16.80700 -16.43087 -15.82742 -15.31579 -14.68198 -14.37607 -14.29214 -14.00982 -13.51170 -12.96026 -12.62540 -12.34231 -12.21469 -12.13638 -12.05717 -11.98179 -11.83772 -11.43124 -11.29601 -11.07889 -10.93321 -10.79454 -10.57918 -10.45228 -10.13159 -9.89466 -9.49048 -9.19010 -8.65434 -7.46287 -6.14509 -4.12681 0.06765 2.51848 3.16939 3.25557 3.30412 3.58905 3.98170 4.30126 4.34941 4.54932 4.74951 4.84221 5.01265 5.07443 5.15292 5.47164 5.58559 5.62329 5.67188 5.72550 5.78482 5.88607 6.03489 6.07572 6.19206 6.34447 6.37259 6.49016 6.61455 6.72094 7.01272 7.53678 7.75646 7.86327 8.55803 8.96251 9.47034 10.98591 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.006367 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.406720 B = 4396.417056 C = 4433.240967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.168 4.168 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.500 4.500 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.897 5.897 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.296 1.296 13 N -0.503 5.503 14 C 0.023 3.977 15 C 0.061 3.939 16 H 0.077 0.923 17 C -0.112 4.112 18 C -0.587 4.587 19 S 2.383 3.617 20 O -0.946 6.946 21 O -0.945 6.945 22 C -0.576 4.576 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.264 0.736 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 2.962 3.286 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.207 4.207 3 C 0.074 3.926 4 H 0.062 0.938 5 C -0.538 4.538 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.224 1.224 13 N -0.226 5.226 14 C -0.125 4.125 15 C -0.049 4.049 16 H 0.095 0.905 17 C -0.150 4.150 18 C -0.718 4.718 19 S 2.567 3.433 20 O -0.943 6.943 21 O -0.942 6.942 22 C -0.707 4.707 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.844 3.739 3.760 13.895 hybrid contribution -0.250 -1.656 -1.441 2.210 sum -13.093 2.082 2.319 13.459 Atomic orbital electron populations 1.22249 0.98266 1.00885 1.00835 1.22706 0.93271 1.02506 1.02170 1.19986 0.97133 0.87745 0.87778 0.93843 1.20907 0.88263 1.36895 1.07736 0.89906 1.24922 0.94708 0.95866 0.97686 1.69873 1.07493 1.45118 1.31064 0.86961 0.80261 0.79841 0.81748 1.20701 1.19283 1.22356 1.62288 1.16133 1.39045 1.05150 1.22444 1.02831 0.94686 0.92519 1.22724 0.95122 0.97038 0.90021 0.90522 1.22029 0.94073 0.98470 1.00463 1.30440 1.07538 1.09874 1.23910 1.09119 0.77874 0.76319 0.79983 1.93596 1.43330 1.72674 1.84694 1.93595 1.87379 1.35725 1.77517 1.30739 1.19134 1.13889 1.06950 0.92491 0.92953 0.93620 0.92754 0.91153 0.92571 0.90274 0.92926 0.95477 0.88284 0.88847 0.84955 0.84465 0.84964 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 8.04 37.16 0.30 -2.31 16 2 C -0.17 -3.28 4.37 -26.73 -0.12 -3.40 16 3 C 0.18 3.79 1.36 -68.86 -0.09 3.70 16 4 H 0.04 0.92 4.82 -51.93 -0.25 0.67 16 5 C -0.50 -13.01 8.86 -34.44 -0.31 -13.32 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -26.32 13.96 55.43 0.77 -25.54 16 9 Si 0.88 20.68 24.40 -169.99 -4.15 16.53 16 10 H -0.28 -6.47 6.84 56.52 0.39 -6.08 16 11 H -0.27 -5.88 6.53 56.52 0.37 -5.51 16 12 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.50 -8.93 4.49 -226.45 -1.02 -9.95 16 14 C 0.02 0.38 8.14 60.06 0.49 0.87 16 15 C 0.06 0.86 1.77 -66.17 -0.12 0.75 16 16 H 0.08 1.04 3.95 -51.93 -0.21 0.83 16 17 C -0.11 -1.44 5.14 -25.65 -0.13 -1.58 16 18 C -0.59 -5.83 7.26 37.78 0.27 -5.56 16 19 S 2.38 27.53 6.11 -107.50 -0.66 26.88 16 20 O -0.95 -13.64 18.15 -57.71 -1.05 -14.69 16 21 O -0.95 -13.81 18.14 -57.71 -1.05 -14.86 16 22 C -0.58 -6.63 5.67 38.24 0.22 -6.41 16 23 H 0.06 0.81 5.00 -51.93 -0.26 0.55 16 24 H 0.05 0.78 7.45 -51.93 -0.39 0.40 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.16 3.23 -51.93 -0.17 0.99 16 27 H 0.07 1.36 6.18 -51.93 -0.32 1.04 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.08 1.45 7.76 -51.93 -0.40 1.05 16 30 H 0.05 0.72 6.61 -51.93 -0.34 0.37 16 31 H 0.03 0.42 4.89 -51.93 -0.25 0.16 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.26 6.77 -51.93 -0.35 0.91 16 34 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.13 1.31 7.59 -51.93 -0.39 0.92 16 37 H 0.15 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -32.96 283.11 -7.51 -40.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.06 Total: 2.33 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 0.42 Total: -25.44 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.24 Total: -35.50 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -2.09 Total: -29.55 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.15 Total: 16.53 kcal Atomic # 16 Polarization: 27.53 SS G_CDS: -0.66 Total: 26.88 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.96 -7.51 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036869990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.038 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds