Wall clock time and date at job start Mon Mar 30 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47203 * 2 1 4 4 H 1.09004 * 109.46990 * 302.90903 * 3 2 1 5 5 C 1.50694 * 109.47394 * 182.90374 * 3 2 1 6 6 H 1.07998 * 120.00384 * 239.99918 * 5 3 2 7 7 C 1.37880 * 119.99692 * 59.99889 * 5 3 2 8 8 N 1.31519 * 119.99821 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00305 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47214 * 270.00232 * 9 7 5 11 11 H 1.48498 * 109.46903 * 29.99856 * 9 7 5 12 12 H 1.48493 * 109.47374 * 149.99652 * 9 7 5 13 13 N 1.46904 * 109.47154 * 62.90253 * 3 2 1 14 14 C 1.46900 * 110.99607 * 41.23370 * 13 3 2 15 15 C 1.46896 * 111.00042 * 277.27970 * 13 3 2 16 16 H 1.09000 * 110.01480 * 61.46629 * 15 13 3 17 17 C 1.53874 * 110.03099 * 300.08540 * 15 13 3 18 18 C 1.54191 * 108.69526 * 193.57482 * 17 15 13 19 19 S 1.82921 * 105.10558 * 27.83699 * 18 17 15 20 20 O 1.42098 * 109.35076 * 244.51592 * 19 18 17 21 21 O 1.42095 * 109.35393 * 111.31424 * 19 18 17 22 22 C 1.55053 * 110.02614 * 182.84219 * 15 13 3 23 23 H 1.08993 * 109.46956 * 283.19395 * 1 2 3 24 24 H 1.09004 * 109.46868 * 43.19219 * 1 2 3 25 25 H 1.08999 * 109.46929 * 163.18992 * 1 2 3 26 26 H 1.08995 * 109.47252 * 240.00281 * 2 1 3 27 27 H 1.09000 * 109.47011 * 119.99659 * 2 1 3 28 28 H 0.97004 * 119.99661 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47527 * 59.99555 * 14 13 3 30 30 H 1.08998 * 109.47002 * 180.02562 * 14 13 3 31 31 H 1.09002 * 109.47180 * 299.99403 * 14 13 3 32 32 H 1.09001 * 109.64314 * 313.38912 * 17 15 13 33 33 H 1.08999 * 109.64358 * 73.67310 * 17 15 13 34 34 H 1.08992 * 110.27408 * 268.94480 * 18 17 15 35 35 H 1.08998 * 110.42835 * 146.80283 * 18 17 15 36 36 H 1.08992 * 110.79415 * 279.99413 * 22 15 13 37 37 H 1.08998 * 110.78479 * 43.45831 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6348 1.9712 -0.8628 5 6 3.5453 1.4432 -0.0720 6 1 4.1236 1.8973 0.7190 7 6 4.1842 0.8639 -1.1478 8 7 5.4979 0.8641 -1.2104 9 14 3.1841 0.0791 -2.5163 10 1 2.9514 -1.3532 -2.2006 11 1 1.8792 0.7772 -2.6387 12 1 3.9264 0.1892 -3.7977 13 7 1.6085 2.1145 1.2330 14 6 1.7408 1.2224 2.3926 15 6 0.2326 2.6133 1.1068 16 1 -0.4514 1.7821 0.9355 17 6 0.1410 3.6189 -0.0544 18 6 -1.2000 4.3728 0.0494 19 16 -1.6166 4.3617 1.8305 20 8 -2.8053 3.6096 2.0314 21 8 -1.5164 5.6822 2.3458 22 6 -0.1743 3.3797 2.3918 23 1 -0.3633 0.2345 1.0005 24 1 -0.3633 0.7493 -0.7034 25 1 -0.3633 -0.9837 -0.2972 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.9474 0.4569 -1.9674 29 1 2.7830 0.9233 2.5039 30 1 1.4142 1.7447 3.2918 31 1 1.1228 0.3372 2.2424 32 1 0.9658 4.3286 0.0096 33 1 0.1908 3.0870 -1.0045 34 1 -1.9698 3.8547 -0.5225 35 1 -1.0893 5.3969 -0.3070 36 1 -0.4625 2.6857 3.1813 37 1 0.6325 4.0327 2.7246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036869990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:02 Heat of formation + Delta-G solvation = -71.635323 kcal Electronic energy + Delta-G solvation = -19223.916391 eV Core-core repulsion = 16321.484757 eV Total energy + Delta-G solvation = -2902.431634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36217 -38.05142 -37.06260 -36.15001 -34.30131 -32.81306 -30.61896 -29.19412 -27.57324 -24.84433 -24.09812 -22.17734 -20.67009 -19.74472 -18.81317 -17.98698 -17.62784 -17.05308 -16.58056 -16.10474 -15.62030 -15.48282 -15.29655 -14.86723 -14.37714 -13.88579 -13.71412 -13.59784 -13.30146 -13.21089 -13.12419 -13.02988 -12.76656 -12.63643 -12.44410 -12.35303 -12.03173 -11.88399 -11.65677 -11.59607 -11.33923 -11.00343 -10.97007 -10.69772 -8.83199 -8.24266 -6.25671 -0.85042 1.31372 1.35542 1.45829 1.61926 2.33589 2.66945 3.02518 3.09613 3.25250 3.52868 3.79939 3.90934 4.06840 4.07517 4.21551 4.31056 4.39889 4.54580 4.63349 4.74673 4.77281 4.83399 4.93613 4.96341 5.03502 5.09769 5.19415 5.25718 5.32363 5.52157 5.68467 6.07542 6.42939 6.71817 6.82486 7.38563 8.92903 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.006367 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.406720 B = 4396.417056 C = 4433.240967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.169 4.169 3 C 0.185 3.815 4 H 0.049 0.951 5 C -0.495 4.495 6 H 0.035 0.965 7 C 0.009 3.991 8 N -0.953 5.953 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.237 1.237 12 H -0.304 1.304 13 N -0.520 5.520 14 C 0.023 3.977 15 C 0.054 3.946 16 H 0.092 0.908 17 C -0.118 4.118 18 C -0.566 4.566 19 S 2.405 3.595 20 O -0.972 6.972 21 O -0.977 6.977 22 C -0.573 4.573 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.704 2.835 2.745 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.208 4.208 3 C 0.077 3.923 4 H 0.067 0.933 5 C -0.534 4.534 6 H 0.054 0.946 7 C -0.187 4.187 8 N -0.594 5.594 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.161 1.161 12 H -0.233 1.233 13 N -0.244 5.244 14 C -0.124 4.124 15 C -0.056 4.056 16 H 0.109 0.891 17 C -0.157 4.157 18 C -0.699 4.699 19 S 2.592 3.408 20 O -0.969 6.969 21 O -0.975 6.975 22 C -0.704 4.704 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.051 3.626 3.263 16.776 hybrid contribution 0.803 -1.559 -1.175 2.111 sum -15.248 2.067 2.087 15.528 Atomic orbital electron populations 1.22220 0.94742 1.02500 1.02448 1.22595 0.96439 1.00635 1.01082 1.19751 0.93535 0.89375 0.89645 0.93287 1.21229 0.91350 1.34981 1.05858 0.94634 1.25762 0.95544 0.96833 1.00575 1.70050 1.09693 1.47411 1.32228 0.85936 0.79773 0.79343 0.77830 1.20041 1.16089 1.23263 1.62093 1.19204 1.39003 1.04084 1.22437 1.01180 0.95543 0.93290 1.22882 0.92936 0.97939 0.91862 0.89116 1.22046 0.95458 0.98320 0.99876 1.30327 1.06346 1.11208 1.21970 1.08366 0.76961 0.74998 0.80440 1.93561 1.44759 1.72999 1.85554 1.93555 1.87701 1.37353 1.78845 1.30733 1.19110 1.14059 1.06520 0.90747 0.91699 0.91913 0.94412 0.91824 0.92819 0.93586 0.90091 0.94155 0.89215 0.89028 0.82482 0.82355 0.83090 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 8.04 71.98 0.58 -3.83 16 2 C -0.17 -6.22 4.37 30.60 0.13 -6.09 16 3 C 0.19 7.55 1.36 44.17 0.06 7.61 16 4 H 0.05 1.96 4.82 -2.38 -0.01 1.95 16 5 C -0.50 -26.54 8.86 25.60 0.23 -26.32 16 6 H 0.04 2.18 8.06 -2.91 -0.02 2.15 16 7 C 0.01 0.52 5.45 84.65 0.46 0.98 16 8 N -0.95 -58.28 13.96 21.45 0.30 -57.98 16 9 Si 0.94 42.54 24.40 68.60 1.67 44.22 16 10 H -0.27 -11.97 6.84 99.48 0.68 -11.29 16 11 H -0.24 -9.43 6.53 99.48 0.65 -8.78 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 13 N -0.52 -17.77 4.49 -870.36 -3.91 -21.68 16 14 C 0.02 0.74 8.14 127.69 1.04 1.78 16 15 C 0.05 1.34 1.77 45.91 0.08 1.42 16 16 H 0.09 2.05 3.95 -2.39 -0.01 2.04 16 17 C -0.12 -2.68 5.14 31.29 0.16 -2.52 16 18 C -0.57 -8.97 7.26 72.39 0.53 -8.44 16 19 S 2.41 48.62 6.11 -56.49 -0.34 48.27 16 20 O -0.97 -25.10 18.15 -127.49 -2.31 -27.42 16 21 O -0.98 -26.58 18.14 -127.49 -2.31 -28.90 16 22 C -0.57 -11.53 5.67 72.68 0.41 -11.12 16 23 H 0.07 1.76 5.00 -2.39 -0.01 1.75 16 24 H 0.06 1.61 7.45 -2.38 -0.02 1.60 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.52 3.23 -2.39 -0.01 1.51 16 27 H 0.06 2.39 6.18 -2.39 -0.01 2.38 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.05 1.72 7.76 -2.39 -0.02 1.71 16 30 H 0.08 2.04 6.61 -2.39 -0.02 2.03 16 31 H 0.04 1.15 4.89 -2.39 -0.01 1.14 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 2.14 6.77 -2.39 -0.02 2.13 16 34 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.15 2.45 7.59 -2.39 -0.02 2.44 16 37 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -73.53 283.11 -2.24 -75.77 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.99 Total: 14.24 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 3.68 Total: -46.53 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -3.61 Total: -79.67 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -4.63 Total: -56.31 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.67 Total: 44.22 kcal Atomic # 16 Polarization: 48.62 SS G_CDS: -0.34 Total: 48.27 kcal Total: -73.53 -2.24 -75.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036869990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.134 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds