Wall clock time and date at job start Mon Mar 30 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 N 1.46500 * 109.47094 * 179.97438 * 7 6 5 10 10 S 1.65602 * 119.99755 * 94.99762 * 9 7 6 11 11 O 1.42106 * 106.40366 * 178.54144 * 10 9 7 12 12 O 1.42099 * 106.40315 * 311.45722 * 10 9 7 13 13 C 1.76194 * 107.22030 * 65.00308 * 10 9 7 14 14 H 1.08001 * 120.00199 * 359.97438 * 13 10 9 15 15 C 1.37882 * 120.00452 * 179.97438 * 13 10 9 16 16 N 1.31523 * 119.99437 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 120.00185 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47298 * 89.99883 * 17 15 13 19 19 H 1.48506 * 109.46893 * 209.99869 * 17 15 13 20 20 H 1.48501 * 109.47213 * 329.99466 * 17 15 13 21 21 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 22 22 H 1.08993 * 109.47194 * 179.97438 * 21 7 6 23 23 C 1.53006 * 109.47127 * 59.99878 * 21 7 6 24 24 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 26 26 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 33 33 H 0.96996 * 119.99989 * 274.99712 * 9 7 6 34 34 H 0.96996 * 119.99508 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.46801 * 300.00272 * 23 21 7 36 36 H 1.08998 * 109.46505 * 59.99871 * 23 21 7 37 37 H 1.09000 * 109.47050 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0568 -1.4134 2.4458 10 16 5.4405 -0.8966 3.1946 11 8 5.6232 -1.7380 4.3251 12 8 6.4167 -0.7444 2.1733 13 6 5.1216 0.7183 3.8229 14 1 4.1534 1.1736 3.6756 15 6 6.1081 1.4010 4.5025 16 7 7.2871 0.8464 4.6822 17 14 5.7702 3.1134 5.1678 18 1 5.2353 3.0110 6.5493 19 1 7.0318 3.8966 5.1823 20 1 4.7751 3.7939 4.3008 21 6 2.0394 -0.7216 1.2493 22 1 1.6761 -0.2082 2.1395 23 6 1.5289 -2.1639 1.2490 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6765 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.9333 -1.2354 -2.1390 30 1 3.9337 0.3056 -1.2487 31 1 5.1695 -1.4435 0.0008 32 1 3.7157 -2.4710 0.0001 33 1 3.5691 -2.1737 2.7991 34 1 7.9812 1.3268 5.1600 35 1 1.8922 -2.6777 0.3590 36 1 1.8919 -2.6779 2.1390 37 1 0.4389 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:10 Heat of formation + Delta-G solvation = -123.938607 kcal Electronic energy + Delta-G solvation = -19068.923052 eV Core-core repulsion = 16164.223377 eV Total energy + Delta-G solvation = -2904.699674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.47658 -35.14415 -34.10567 -33.87032 -33.03050 -32.31902 -29.56024 -26.85428 -26.11643 -25.48735 -21.84331 -20.98363 -19.06141 -18.24053 -17.32970 -16.28040 -15.68800 -15.25041 -14.76638 -14.39325 -14.01365 -13.88189 -13.56426 -13.30217 -12.85456 -12.42184 -12.14366 -12.02603 -11.87799 -11.41756 -11.28456 -11.23478 -11.19550 -10.93702 -10.66929 -10.58586 -10.44746 -10.22709 -10.11769 -10.09815 -9.96296 -9.64682 -9.22008 -8.90386 -8.41767 -6.67079 -5.28325 2.42163 3.08017 3.14872 3.21178 4.08580 4.66146 4.70406 4.80117 4.88968 5.05362 5.29731 5.33417 5.45815 5.52204 5.60883 5.65927 5.76859 5.82583 5.86980 5.92568 5.94170 6.04793 6.12230 6.13847 6.24455 6.27885 6.32723 6.47974 6.55362 6.59166 6.66133 6.84070 7.02521 7.35827 7.97462 8.04689 8.92233 10.27076 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.007154 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.466126 B = 3912.802178 C = 4334.227784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.140 4.140 7 C 0.168 3.832 8 H 0.086 0.914 9 N -1.132 6.132 10 S 2.715 3.285 11 O -1.011 7.011 12 O -1.006 7.006 13 C -1.021 5.021 14 H 0.101 0.899 15 C 0.133 3.867 16 N -0.846 5.846 17 Si 0.918 3.082 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.263 1.263 21 C -0.093 4.093 22 H 0.076 0.924 23 C -0.152 4.152 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.290 0.710 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.017 -1.364 -9.370 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.180 4.180 7 C 0.059 3.941 8 H 0.105 0.895 9 N -0.886 5.886 10 S 2.815 3.185 11 O -1.001 7.001 12 O -0.996 6.996 13 C -1.154 5.154 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.476 5.476 17 Si 0.743 3.257 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.187 1.187 21 C -0.113 4.113 22 H 0.095 0.905 23 C -0.209 4.209 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.907 -1.731 -9.311 14.445 hybrid contribution -0.720 1.115 0.693 1.498 sum -11.627 -0.615 -8.618 14.486 Atomic orbital electron populations 1.21872 0.95512 1.01710 1.01306 1.21136 0.95184 0.99725 0.94643 0.90937 1.21648 0.95902 1.00636 0.97051 1.21504 0.95126 1.01208 0.97759 1.22141 1.02279 0.99514 0.94022 1.20528 0.92888 0.96269 0.84383 0.89549 1.56107 1.48132 1.44453 1.39882 1.00387 0.70438 0.75480 0.72236 1.93367 1.84474 1.70334 1.51942 1.93354 1.57768 1.88274 1.60173 1.30592 1.07678 1.25932 1.51223 0.88044 1.24739 0.92887 0.99632 0.91224 1.69905 1.03560 1.38984 1.35107 0.86195 0.78763 0.81098 0.79692 1.19244 1.19994 1.18671 1.21408 0.95153 0.96649 0.98063 0.90542 1.21976 1.00425 0.96447 1.02027 0.92491 0.92788 0.93083 0.91813 0.92468 0.92167 0.91738 0.90274 0.91835 0.76900 0.89956 0.92019 0.92652 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.84 37.16 0.33 -1.11 16 2 C -0.09 -1.02 2.50 -90.62 -0.23 -1.25 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.11 -1.26 4.93 -26.73 -0.13 -1.39 16 5 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 6 C -0.14 -2.20 5.25 -26.73 -0.14 -2.34 16 7 C 0.17 2.87 2.35 -67.93 -0.16 2.71 16 8 H 0.09 1.61 7.85 -51.93 -0.41 1.21 16 9 N -1.13 -22.43 5.43 -4.89 -0.03 -22.46 16 10 S 2.71 72.10 4.93 -107.50 -0.53 71.57 16 11 O -1.01 -29.97 18.02 -57.17 -1.03 -31.00 16 12 O -1.01 -29.16 17.28 -57.17 -0.99 -30.14 16 13 C -1.02 -28.16 9.58 30.60 0.29 -27.87 16 14 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 15 C 0.13 3.74 5.46 -17.81 -0.10 3.64 16 16 N -0.85 -25.11 13.19 55.43 0.73 -24.38 16 17 Si 0.92 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 21 C -0.09 -1.27 2.43 -90.62 -0.22 -1.49 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 23 C -0.15 -1.81 7.96 37.16 0.30 -1.51 16 24 H 0.06 0.52 6.42 -51.93 -0.33 0.19 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.45 7.64 -51.93 -0.40 1.05 16 32 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 33 H 0.40 6.95 7.03 -34.47 -0.24 6.71 16 34 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 36 H 0.05 0.68 6.50 -51.93 -0.34 0.34 16 37 H 0.05 0.56 6.42 -51.93 -0.33 0.23 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -34.01 297.58 -8.07 -42.08 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.47 Total: 6.42 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: -0.22 Total: -32.25 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.70 Total: -46.84 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -2.02 Total: -61.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 72.10 SS G_CDS: -0.53 Total: 71.57 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.01 -8.07 -42.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.863 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds