Wall clock time and date at job start Mon Mar 30 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 N 1.46500 * 109.47094 * 179.97438 * 7 6 5 10 10 S 1.65602 * 119.99755 * 94.99762 * 9 7 6 11 11 O 1.42106 * 106.40366 * 178.54144 * 10 9 7 12 12 O 1.42099 * 106.40315 * 311.45722 * 10 9 7 13 13 C 1.76194 * 107.22030 * 65.00308 * 10 9 7 14 14 H 1.08001 * 120.00199 * 359.97438 * 13 10 9 15 15 C 1.37882 * 120.00452 * 179.97438 * 13 10 9 16 16 N 1.31523 * 119.99437 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 120.00185 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47298 * 89.99883 * 17 15 13 19 19 H 1.48506 * 109.46893 * 209.99869 * 17 15 13 20 20 H 1.48501 * 109.47213 * 329.99466 * 17 15 13 21 21 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 22 22 H 1.08993 * 109.47194 * 179.97438 * 21 7 6 23 23 C 1.53006 * 109.47127 * 59.99878 * 21 7 6 24 24 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 26 26 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 33 33 H 0.96996 * 119.99989 * 274.99712 * 9 7 6 34 34 H 0.96996 * 119.99508 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.46801 * 300.00272 * 23 21 7 36 36 H 1.08998 * 109.46505 * 59.99871 * 23 21 7 37 37 H 1.09000 * 109.47050 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0568 -1.4134 2.4458 10 16 5.4405 -0.8966 3.1946 11 8 5.6232 -1.7380 4.3251 12 8 6.4167 -0.7444 2.1733 13 6 5.1216 0.7183 3.8229 14 1 4.1534 1.1736 3.6756 15 6 6.1081 1.4010 4.5025 16 7 7.2871 0.8464 4.6822 17 14 5.7702 3.1134 5.1678 18 1 5.2353 3.0110 6.5493 19 1 7.0318 3.8966 5.1823 20 1 4.7751 3.7939 4.3008 21 6 2.0394 -0.7216 1.2493 22 1 1.6761 -0.2082 2.1395 23 6 1.5289 -2.1639 1.2490 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6765 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.9333 -1.2354 -2.1390 30 1 3.9337 0.3056 -1.2487 31 1 5.1695 -1.4435 0.0008 32 1 3.7157 -2.4710 0.0001 33 1 3.5691 -2.1737 2.7991 34 1 7.9812 1.3268 5.1600 35 1 1.8922 -2.6777 0.3590 36 1 1.8919 -2.6779 2.1390 37 1 0.4389 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:10 Heat of formation + Delta-G solvation = -149.426137 kcal Electronic energy + Delta-G solvation = -19070.028274 eV Core-core repulsion = 16164.223377 eV Total energy + Delta-G solvation = -2905.804896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60219 -37.36813 -36.11850 -35.51851 -35.11820 -33.37689 -30.75027 -28.28445 -27.93855 -26.49178 -22.92554 -22.14909 -21.08533 -19.48931 -19.16773 -18.24700 -17.31214 -16.80324 -16.25251 -15.92845 -15.60168 -15.39291 -14.98709 -14.52673 -14.05306 -13.90970 -13.39698 -13.37520 -13.20393 -13.02802 -12.85667 -12.56777 -12.46241 -12.44514 -12.31859 -12.30804 -12.26711 -11.97215 -11.47060 -11.26161 -11.21924 -11.11870 -10.88478 -10.82433 -10.06391 -8.76432 -7.49111 0.38880 1.32337 1.32828 1.48894 2.19670 2.56959 3.00013 3.67239 3.77117 3.88013 3.96256 4.21950 4.27739 4.35846 4.49983 4.51930 4.57301 4.70238 4.82753 4.83680 4.88163 4.92497 5.10026 5.11710 5.16409 5.23345 5.23909 5.30460 5.33959 5.43190 5.52314 5.57863 5.59443 5.77375 5.89374 6.44590 6.77198 8.20176 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.007154 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.466126 B = 3912.802178 C = 4334.227784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.140 4.140 7 C 0.157 3.843 8 H 0.063 0.937 9 N -1.116 6.116 10 S 2.719 3.281 11 O -1.050 7.050 12 O -1.040 7.040 13 C -1.041 5.041 14 H 0.118 0.882 15 C 0.069 3.931 16 N -0.895 5.895 17 Si 0.989 3.011 18 H -0.254 1.254 19 H -0.262 1.262 20 H -0.247 1.247 21 C -0.088 4.088 22 H 0.069 0.931 23 C -0.151 4.151 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.412 0.588 34 H 0.299 0.701 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 -0.494 -10.346 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.179 4.179 7 C 0.050 3.950 8 H 0.081 0.919 9 N -0.875 5.875 10 S 2.820 3.180 11 O -1.040 7.040 12 O -1.030 7.030 13 C -1.174 5.174 14 H 0.137 0.863 15 C -0.144 4.144 16 N -0.526 5.526 17 Si 0.807 3.193 18 H -0.179 1.179 19 H -0.186 1.186 20 H -0.170 1.170 21 C -0.109 4.109 22 H 0.087 0.913 23 C -0.208 4.208 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.247 0.753 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.531 -0.889 -10.298 17.027 hybrid contribution 0.084 0.787 0.946 1.234 sum -13.447 -0.102 -9.352 16.379 Atomic orbital electron populations 1.21830 0.93491 1.02612 1.01962 1.21153 0.96772 0.98978 0.93798 0.91866 1.21631 0.93919 1.01625 0.97432 1.21514 0.96920 1.00366 0.96615 1.22115 1.00090 1.00845 0.94883 1.20836 0.95709 0.94906 0.83564 0.91862 1.55510 1.46530 1.44949 1.40511 0.99888 0.71308 0.75273 0.71541 1.93301 1.85803 1.71191 1.53728 1.93304 1.60232 1.88620 1.60841 1.30926 1.08631 1.26525 1.51307 0.86348 1.26030 0.92385 1.04710 0.91238 1.69999 1.04945 1.41311 1.36379 0.85150 0.79554 0.75061 0.79557 1.17859 1.18613 1.16981 1.21389 0.91934 0.98386 0.99143 0.91271 1.21999 1.01908 0.94851 1.02087 0.91430 0.92982 0.91681 0.90499 0.90374 0.90514 0.92696 0.93901 0.90173 0.75307 0.89134 0.91179 0.93406 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.84 71.98 0.64 -1.62 16 2 C -0.09 -1.82 2.50 -10.79 -0.03 -1.85 16 3 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -2.03 4.93 30.59 0.15 -1.87 16 5 C -0.12 -2.78 5.92 30.59 0.18 -2.60 16 6 C -0.14 -4.37 5.25 30.60 0.16 -4.21 16 7 C 0.16 5.39 2.35 44.99 0.11 5.50 16 8 H 0.06 2.45 7.85 -2.39 -0.02 2.43 16 9 N -1.12 -45.05 5.43 -169.38 -0.92 -45.97 16 10 S 2.72 149.54 4.93 -56.49 -0.28 149.26 16 11 O -1.05 -64.54 18.02 -128.00 -2.31 -66.84 16 12 O -1.04 -63.10 17.28 -128.00 -2.21 -65.32 16 13 C -1.04 -58.30 9.58 67.74 0.65 -57.65 16 14 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 15 C 0.07 3.90 5.46 84.65 0.46 4.37 16 16 N -0.89 -54.42 13.19 21.45 0.28 -54.14 16 17 Si 0.99 41.83 29.54 68.60 2.03 43.85 16 18 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 21 C -0.09 -2.27 2.43 -10.79 -0.03 -2.30 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 23 C -0.15 -3.21 7.96 71.98 0.57 -2.63 16 24 H 0.07 0.95 6.42 -2.39 -0.02 0.93 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.27 6.43 -2.39 -0.02 1.25 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.63 7.64 -2.39 -0.02 1.61 16 32 H 0.08 2.19 6.43 -2.39 -0.02 2.17 16 33 H 0.41 14.44 7.03 -96.75 -0.68 13.76 16 34 H 0.30 16.28 8.31 -92.71 -0.77 15.51 16 35 H 0.07 1.37 4.81 -2.39 -0.01 1.36 16 36 H 0.05 1.08 6.50 -2.39 -0.02 1.06 16 37 H 0.08 1.31 6.42 -2.39 -0.02 1.30 16 Total: -1.00 -75.60 297.58 -0.16 -75.76 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.39 Total: 28.28 kcal Atomic # 6 Polarization: -67.74 SS G_CDS: 2.87 Total: -64.88 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -0.64 Total: -100.11 kcal Atomic # 8 Polarization: -127.64 SS G_CDS: -4.52 Total: -132.16 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 149.54 SS G_CDS: -0.28 Total: 149.26 kcal Total: -75.60 -0.16 -75.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.666 kcal (2) G-P(sol) polarization free energy of solvation -75.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds