Wall clock time and date at job start Mon Mar 30 2020 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46844 * 2 1 4 4 C 1.52991 * 109.47241 * 120.00549 * 2 1 3 5 5 C 1.52993 * 109.47322 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46953 * 299.99925 * 5 4 2 7 7 C 1.53002 * 109.47384 * 59.99790 * 6 5 4 8 8 H 1.09001 * 109.46916 * 59.99810 * 7 6 5 9 9 N 1.46493 * 109.47236 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99934 * 60.00072 * 9 7 6 11 11 S 1.65600 * 120.00138 * 240.00024 * 9 7 6 12 12 O 1.42094 * 106.40399 * 336.46101 * 11 9 7 13 13 O 1.42107 * 106.40194 * 203.54208 * 11 9 7 14 14 C 1.76203 * 107.21803 * 90.00489 * 11 9 7 15 15 H 1.08002 * 119.99736 * 359.97438 * 14 11 9 16 16 C 1.37871 * 119.99719 * 180.27922 * 14 11 9 17 17 N 1.31523 * 119.99908 * 179.72129 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 359.71727 * 16 14 11 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 C 1.52996 * 109.46630 * 240.00343 * 2 1 3 23 23 H 1.09007 * 109.47105 * 299.99837 * 1 2 3 24 24 H 1.09004 * 109.47464 * 59.99634 * 1 2 3 25 25 H 1.08993 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47664 * 59.99170 * 4 2 1 27 27 H 1.09010 * 109.47247 * 299.99902 * 4 2 1 28 28 H 1.09004 * 109.47545 * 179.97438 * 5 4 2 29 29 H 1.09005 * 109.47435 * 59.99809 * 5 4 2 30 30 H 1.09001 * 109.47249 * 299.99805 * 6 5 4 31 31 H 1.09008 * 109.47185 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.46912 * 269.99933 * 10 9 7 33 33 H 1.09000 * 109.46600 * 30.00181 * 10 9 7 34 34 H 1.09000 * 109.46758 * 149.99452 * 10 9 7 35 35 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47404 * 60.00347 * 22 2 1 37 37 H 1.09001 * 109.47492 * 299.99836 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5700 -0.7219 1.2488 6 6 4.0794 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9331 0.3054 -1.2499 9 7 4.0577 -1.4126 -2.4459 10 6 3.7037 -2.8153 -2.6778 11 16 5.0097 -0.6078 -3.5359 12 8 4.7297 0.7752 -3.3690 13 8 4.8620 -1.2865 -4.7757 14 6 6.6838 -0.8403 -3.0379 15 1 6.9092 -1.4254 -2.1585 16 6 7.7055 -0.2702 -3.7672 17 7 8.9548 -0.4391 -3.3923 18 14 7.3155 0.7423 -5.2878 19 1 7.1315 2.1644 -4.9018 20 1 8.4363 0.6332 -6.2560 21 1 6.0688 0.2341 -5.9144 22 6 2.0399 -0.7212 -1.2493 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6766 -1.7490 1.2492 27 1 1.6767 -0.2075 2.1392 28 1 3.9334 -1.2354 2.1390 29 1 3.9337 0.3057 1.2486 30 1 3.7157 -2.4710 -0.0004 31 1 5.1695 -1.4442 -0.0005 32 1 4.4550 -3.4598 -2.2215 33 1 2.7297 -3.0222 -2.2344 34 1 3.6630 -3.0072 -3.7500 35 1 9.6736 -0.0383 -3.9056 36 1 1.6766 -0.2073 -2.1393 37 1 1.6766 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:19 Heat of formation + Delta-G solvation = -126.232673 kcal Electronic energy + Delta-G solvation = -19101.703449 eV Core-core repulsion = 16196.904297 eV Total energy + Delta-G solvation = -2904.799152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10265 -37.74845 -36.51962 -36.28367 -35.19688 -33.06019 -30.55400 -28.57179 -27.24633 -27.00887 -23.17149 -22.15889 -20.61941 -20.47676 -19.25702 -18.63650 -17.23772 -17.05904 -16.01877 -15.75545 -15.41750 -15.22194 -15.10754 -15.07712 -14.68340 -13.96979 -13.87979 -13.55982 -13.42235 -13.21225 -13.13093 -12.82820 -12.70191 -12.63774 -12.42040 -12.34960 -11.93560 -11.85403 -11.75276 -11.37007 -11.32257 -11.24370 -11.11169 -10.93178 -9.72564 -8.98908 -7.53793 0.10593 1.01195 1.10654 1.18025 1.86213 2.38409 2.43423 3.35890 3.72400 3.82278 3.90102 4.08176 4.13707 4.29771 4.36980 4.51290 4.59040 4.59226 4.73434 4.76278 4.84273 4.84873 4.94403 5.00142 5.06218 5.11014 5.22812 5.31566 5.36022 5.40017 5.42236 5.48872 5.51929 5.67169 5.94339 5.99826 6.51623 8.19117 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.031638 B = 0.006989 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.791771 B = 4005.516953 C = 4205.023949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.061 0.939 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.142 3.858 8 H 0.071 0.929 9 N -0.997 5.997 10 C 0.083 3.917 11 S 2.691 3.309 12 O -1.029 7.029 13 O -1.027 7.027 14 C -1.036 5.036 15 H 0.103 0.897 16 C 0.108 3.892 17 N -0.854 5.854 18 Si 0.823 3.177 19 H -0.239 1.239 20 H -0.217 1.217 21 H -0.230 1.230 22 C -0.117 4.117 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.291 0.709 36 H 0.052 0.948 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.525 -2.432 8.716 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.079 0.921 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.165 4.165 7 C 0.037 3.963 8 H 0.089 0.911 9 N -0.835 5.835 10 C -0.062 4.062 11 S 2.792 3.208 12 O -1.019 7.019 13 O -1.017 7.017 14 C -1.168 5.168 15 H 0.121 0.879 16 C -0.109 4.109 17 N -0.485 5.485 18 Si 0.640 3.360 19 H -0.163 1.163 20 H -0.139 1.139 21 H -0.152 1.152 22 C -0.156 4.156 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.637 -1.958 7.932 16.763 hybrid contribution 1.262 0.220 -0.369 1.333 sum -13.375 -1.738 7.564 15.464 Atomic orbital electron populations 1.21773 0.93533 1.02462 1.01999 1.21156 0.96719 0.99259 0.94154 0.92068 1.21579 0.94116 1.01384 0.97250 1.21543 0.96791 1.00430 0.96826 1.21904 1.00034 1.00693 0.93911 1.21042 0.95682 0.95676 0.83924 0.91053 1.57104 1.66523 1.22440 1.37481 1.21646 1.02522 0.79660 1.02349 1.00716 0.75146 0.72372 0.72520 1.93352 1.86725 1.35063 1.86768 1.93404 1.88324 1.75778 1.44192 1.31071 1.15347 1.45914 1.24482 0.87906 1.25181 0.94544 0.93008 0.98156 1.70017 1.00057 1.39202 1.39181 0.87521 0.83921 0.82458 0.82106 1.16285 1.13882 1.15241 1.21935 0.92836 1.02287 0.98534 0.91465 0.93176 0.91748 0.90676 0.90340 0.90191 0.92718 0.89886 0.93632 0.92517 0.87822 0.91305 0.89853 0.92948 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.97 2.72 -10.80 -0.03 -2.00 16 3 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 4 C -0.11 -1.90 5.20 30.59 0.16 -1.74 16 5 C -0.12 -2.63 5.92 30.59 0.18 -2.45 16 6 C -0.13 -3.60 5.20 30.59 0.16 -3.44 16 7 C 0.14 4.81 2.51 44.98 0.11 4.92 16 8 H 0.07 2.79 6.91 -2.39 -0.02 2.78 16 9 N -1.00 -39.23 3.07 -516.60 -1.59 -40.81 16 10 C 0.08 2.61 9.72 127.77 1.24 3.85 16 11 S 2.69 138.79 4.19 -56.49 -0.24 138.55 16 12 O -1.03 -56.29 15.39 -128.00 -1.97 -58.26 16 13 O -1.03 -56.01 14.63 -128.00 -1.87 -57.89 16 14 C -1.04 -60.21 10.29 67.73 0.70 -59.51 16 15 H 0.10 6.14 8.06 -2.91 -0.02 6.12 16 16 C 0.11 6.36 5.47 84.65 0.46 6.82 16 17 N -0.85 -50.58 13.96 21.45 0.30 -50.28 16 18 Si 0.82 42.18 26.53 68.60 1.82 44.00 16 19 H -0.24 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.22 -9.73 7.11 99.48 0.71 -9.02 16 21 H -0.23 -12.13 5.61 99.48 0.56 -11.57 16 22 C -0.12 -3.06 4.46 30.58 0.14 -2.92 16 23 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 2.02 7.67 -2.39 -0.02 2.00 16 31 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 2.38 6.43 -2.39 -0.02 2.37 16 34 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 35 H 0.29 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.87 6.66 -2.39 -0.02 1.86 16 Total: -1.00 -69.77 298.91 1.12 -68.65 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.88 Total: 14.15 kcal Atomic # 6 Polarization: -61.90 SS G_CDS: 3.78 Total: -58.12 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.29 Total: -91.09 kcal Atomic # 8 Polarization: -112.30 SS G_CDS: -3.84 Total: -116.14 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.82 Total: 44.00 kcal Atomic # 16 Polarization: 138.79 SS G_CDS: -0.24 Total: 138.55 kcal Total: -69.77 1.12 -68.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.581 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds