Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 S 1.65600 * 119.99999 * 214.99942 * 6 5 4 8 8 O 1.42095 * 106.40521 * 178.53974 * 7 6 5 9 9 O 1.42106 * 106.40092 * 311.45988 * 7 6 5 10 10 C 1.76201 * 107.22078 * 64.99779 * 7 6 5 11 11 H 1.08002 * 119.99737 * 359.97438 * 10 7 6 12 12 C 1.37869 * 120.00205 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00263 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00129 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47010 * 60.00116 * 14 12 10 16 16 H 1.48497 * 109.47418 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47157 * 299.99884 * 14 12 10 18 18 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 5 4 20 20 H 1.09002 * 109.47153 * 60.00231 * 19 18 5 21 21 C 1.53002 * 109.47143 * 180.02562 * 19 18 5 22 22 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 0.97000 * 120.00636 * 34.99717 * 6 5 4 30 30 H 0.96996 * 120.00309 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.47662 * 180.02562 * 18 5 4 32 32 H 1.09002 * 109.47075 * 300.00932 * 18 5 4 33 33 H 1.09002 * 109.47067 * 59.99982 * 21 19 18 34 34 H 1.09000 * 109.47312 * 180.02562 * 21 19 18 35 35 H 1.09004 * 109.46930 * 300.00065 * 21 19 18 36 36 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 7 2.0188 -2.8548 -2.4448 7 16 1.0697 -3.9867 -3.1932 8 8 1.8018 -4.4405 -4.3233 9 8 0.6000 -4.8555 -2.1714 10 6 -0.3461 -3.1471 -3.8219 11 1 -0.4518 -2.0823 -3.6751 12 6 -1.3193 -3.8495 -4.5003 13 7 -1.1913 -5.1463 -4.6778 14 14 -2.8206 -2.9595 -5.1662 15 1 -2.3900 -1.9179 -6.1332 16 1 -3.7097 -3.9322 -5.8506 17 1 -3.5551 -2.3206 -4.0448 18 6 2.0399 -2.8851 0.0003 19 6 1.5299 -2.1637 1.2495 20 1 0.4399 -2.1636 1.2494 21 6 2.0404 -2.8844 2.4988 22 6 2.0399 -0.7211 1.2494 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1301 -0.7218 -1.2489 27 1 1.6767 -0.2076 -2.1392 28 1 0.4400 -2.1638 -1.2490 29 1 2.8984 -2.6492 -2.7982 30 1 -1.8759 -5.6404 -5.1554 31 1 1.6770 -3.9128 0.0003 32 1 3.1299 -2.8850 0.0004 33 1 3.1304 -2.8841 2.4986 34 1 1.6767 -2.3708 3.3887 35 1 1.6774 -3.9123 2.4991 36 1 1.6766 -0.2072 2.1393 37 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084978447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = -128.183065 kcal Electronic energy + Delta-G solvation = -19009.549020 eV Core-core repulsion = 16104.665292 eV Total energy + Delta-G solvation = -2904.883728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.29175 -35.14412 -34.11022 -33.88071 -33.06603 -32.90428 -28.53405 -26.65615 -26.25623 -26.08871 -21.73978 -20.88309 -19.21335 -18.39584 -17.23138 -16.18243 -15.80199 -14.97924 -14.73126 -14.30589 -14.00402 -13.75168 -13.59783 -13.46537 -13.02117 -12.42592 -12.03549 -11.99239 -11.77142 -11.40353 -11.25372 -11.19432 -11.18417 -10.90646 -10.70387 -10.66064 -10.60500 -10.23438 -10.19095 -10.11507 -9.99318 -9.55173 -9.21395 -8.92414 -8.43380 -6.67154 -5.28774 2.41316 3.09508 3.14059 3.19722 4.08231 4.65212 4.69398 4.80893 4.89752 5.11740 5.25423 5.29368 5.45987 5.57816 5.62884 5.76112 5.80549 5.83332 5.87183 5.90141 5.96427 6.07189 6.12479 6.15047 6.23885 6.30515 6.38272 6.45856 6.52411 6.64887 6.65283 6.80892 7.01781 7.35509 7.96683 8.03926 8.91814 10.27025 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.007303 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.009083 B = 3833.101744 C = 4322.450957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.121 4.121 5 C 0.160 3.840 6 N -1.133 6.133 7 S 2.715 3.285 8 O -1.010 7.010 9 O -1.006 7.006 10 C -1.021 5.021 11 H 0.101 0.899 12 C 0.134 3.866 13 N -0.846 5.846 14 Si 0.918 3.082 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.264 1.264 18 C -0.133 4.133 19 C -0.095 4.095 20 H 0.076 0.924 21 C -0.145 4.145 22 C -0.108 4.108 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.400 0.600 30 H 0.291 0.709 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 9.838 10.297 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.160 4.160 5 C 0.052 3.948 6 N -0.886 5.886 7 S 2.815 3.185 8 O -1.001 7.001 9 O -0.995 6.995 10 C -1.155 5.155 11 H 0.119 0.881 12 C -0.084 4.084 13 N -0.476 5.476 14 Si 0.742 3.258 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.188 1.188 18 C -0.172 4.172 19 C -0.114 4.114 20 H 0.094 0.906 21 C -0.203 4.203 22 C -0.145 4.145 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.073 8.665 10.239 14.018 hybrid contribution -0.748 1.075 -0.674 1.472 sum 3.325 9.740 9.565 14.050 Atomic orbital electron populations 1.22006 0.95214 1.02835 1.01374 1.21071 0.96140 0.98744 0.94805 0.91414 1.21894 1.00645 0.95552 0.97869 1.20590 0.99142 0.90719 0.84322 1.56075 1.30866 1.61721 1.39927 1.00384 0.73798 0.72107 0.72235 1.93366 1.74463 1.80301 1.51957 1.93356 1.81782 1.64255 1.60155 1.30558 1.26214 1.07327 1.51357 0.88078 1.24725 0.98325 0.94158 0.91214 1.69892 1.35435 1.07091 1.35137 0.86243 0.80201 0.79853 0.79525 1.18895 1.20130 1.18839 1.22171 1.00720 1.00801 0.93510 1.21173 1.00996 0.94422 0.94764 0.90587 1.21813 1.00847 1.00533 0.97067 1.21640 1.00315 0.95407 0.97182 0.91449 0.93043 0.92555 0.91844 0.91241 0.89270 0.77004 0.89887 0.90200 0.92166 0.93011 0.93106 0.92505 0.92309 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.50 37.16 0.32 -1.59 16 2 C -0.09 -1.03 3.20 -90.62 -0.29 -1.32 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -1.65 4.98 -26.73 -0.13 -1.78 16 5 C 0.16 2.75 2.38 -67.93 -0.16 2.59 16 6 N -1.13 -22.49 5.47 -4.89 -0.03 -22.52 16 7 S 2.72 72.11 4.93 -107.50 -0.53 71.58 16 8 O -1.01 -29.95 18.02 -57.17 -1.03 -30.98 16 9 O -1.01 -29.12 17.28 -57.17 -0.99 -30.11 16 10 C -1.02 -28.10 9.58 30.60 0.29 -27.80 16 11 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 12 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 13 N -0.85 -25.07 13.19 55.43 0.73 -24.33 16 14 Si 0.92 20.64 29.54 -169.99 -5.02 15.62 16 15 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 18 C -0.13 -2.10 4.81 -26.73 -0.13 -2.23 16 19 C -0.09 -1.22 2.45 -90.62 -0.22 -1.44 16 20 H 0.08 1.02 6.43 -51.93 -0.33 0.69 16 21 C -0.15 -1.65 9.19 37.16 0.34 -1.30 16 22 C -0.11 -1.19 4.73 -26.73 -0.13 -1.32 16 23 H 0.07 0.91 4.81 -51.93 -0.25 0.66 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.67 6.14 -51.93 -0.32 1.35 16 29 H 0.40 6.88 8.84 -34.46 -0.30 6.58 16 30 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.08 1.48 7.64 -51.93 -0.40 1.08 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -33.90 304.55 -8.28 -42.19 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.80 Total: 6.52 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: -0.21 Total: -32.55 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.70 Total: -46.85 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -2.02 Total: -61.09 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 72.11 SS G_CDS: -0.53 Total: 71.58 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.90 -8.28 -42.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084978447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.997 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds