Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 S 1.65600 * 119.99999 * 214.99942 * 6 5 4 8 8 O 1.42095 * 106.40521 * 178.53974 * 7 6 5 9 9 O 1.42106 * 106.40092 * 311.45988 * 7 6 5 10 10 C 1.76201 * 107.22078 * 64.99779 * 7 6 5 11 11 H 1.08002 * 119.99737 * 359.97438 * 10 7 6 12 12 C 1.37869 * 120.00205 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00263 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00129 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47010 * 60.00116 * 14 12 10 16 16 H 1.48497 * 109.47418 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47157 * 299.99884 * 14 12 10 18 18 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 5 4 20 20 H 1.09002 * 109.47153 * 60.00231 * 19 18 5 21 21 C 1.53002 * 109.47143 * 180.02562 * 19 18 5 22 22 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 0.97000 * 120.00636 * 34.99717 * 6 5 4 30 30 H 0.96996 * 120.00309 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.47662 * 180.02562 * 18 5 4 32 32 H 1.09002 * 109.47075 * 300.00932 * 18 5 4 33 33 H 1.09002 * 109.47067 * 59.99982 * 21 19 18 34 34 H 1.09000 * 109.47312 * 180.02562 * 21 19 18 35 35 H 1.09004 * 109.46930 * 300.00065 * 21 19 18 36 36 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 7 2.0188 -2.8548 -2.4448 7 16 1.0697 -3.9867 -3.1932 8 8 1.8018 -4.4405 -4.3233 9 8 0.6000 -4.8555 -2.1714 10 6 -0.3461 -3.1471 -3.8219 11 1 -0.4518 -2.0823 -3.6751 12 6 -1.3193 -3.8495 -4.5003 13 7 -1.1913 -5.1463 -4.6778 14 14 -2.8206 -2.9595 -5.1662 15 1 -2.3900 -1.9179 -6.1332 16 1 -3.7097 -3.9322 -5.8506 17 1 -3.5551 -2.3206 -4.0448 18 6 2.0399 -2.8851 0.0003 19 6 1.5299 -2.1637 1.2495 20 1 0.4399 -2.1636 1.2494 21 6 2.0404 -2.8844 2.4988 22 6 2.0399 -0.7211 1.2494 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1301 -0.7218 -1.2489 27 1 1.6767 -0.2076 -2.1392 28 1 0.4400 -2.1638 -1.2490 29 1 2.8984 -2.6492 -2.7982 30 1 -1.8759 -5.6404 -5.1554 31 1 1.6770 -3.9128 0.0003 32 1 3.1299 -2.8850 0.0004 33 1 3.1304 -2.8841 2.4986 34 1 1.6767 -2.3708 3.3887 35 1 1.6774 -3.9123 2.4991 36 1 1.6766 -0.2072 2.1393 37 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084978447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = -153.580244 kcal Electronic energy + Delta-G solvation = -19010.650324 eV Core-core repulsion = 16104.665292 eV Total energy + Delta-G solvation = -2905.985032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41144 -37.36540 -36.11915 -35.57581 -35.12922 -33.94350 -29.90673 -28.27128 -27.61434 -27.23689 -22.99680 -21.96240 -21.14053 -19.73816 -19.10310 -18.15569 -17.31331 -16.84719 -15.96855 -15.91939 -15.62909 -15.27373 -14.76012 -14.59398 -14.42936 -13.99055 -13.48054 -13.35225 -13.07156 -13.00239 -12.82575 -12.54906 -12.52454 -12.45907 -12.35191 -12.31616 -12.27990 -11.87301 -11.69121 -11.26487 -11.24312 -11.15443 -10.97948 -10.68627 -10.09064 -8.75879 -7.48791 0.38625 1.32583 1.34749 1.47611 2.19930 2.57553 2.99211 3.69209 3.76160 3.89403 3.98254 4.18532 4.24997 4.41715 4.44733 4.53698 4.55511 4.69013 4.79671 4.87134 4.90250 4.90982 5.03332 5.09963 5.14169 5.22503 5.24499 5.29076 5.40912 5.41444 5.49395 5.54123 5.63861 5.69932 5.89584 6.45700 6.77531 8.20561 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.007303 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.009083 B = 3833.101744 C = 4322.450957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 H 0.095 0.905 4 C -0.116 4.116 5 C 0.150 3.850 6 N -1.118 6.118 7 S 2.719 3.281 8 O -1.050 7.050 9 O -1.041 7.041 10 C -1.040 5.040 11 H 0.119 0.881 12 C 0.070 3.930 13 N -0.895 5.895 14 Si 0.987 3.013 15 H -0.250 1.250 16 H -0.264 1.264 17 H -0.248 1.248 18 C -0.132 4.132 19 C -0.094 4.094 20 H 0.064 0.936 21 C -0.143 4.143 22 C -0.102 4.102 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.413 0.587 30 H 0.299 0.701 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 12.751 11.315 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.103 4.103 3 H 0.113 0.887 4 C -0.155 4.155 5 C 0.043 3.957 6 N -0.876 5.876 7 S 2.819 3.181 8 O -1.040 7.040 9 O -1.030 7.030 10 C -1.173 5.173 11 H 0.137 0.863 12 C -0.143 4.143 13 N -0.527 5.527 14 Si 0.805 3.195 15 H -0.174 1.174 16 H -0.188 1.188 17 H -0.172 1.172 18 C -0.171 4.171 19 C -0.113 4.113 20 H 0.083 0.917 21 C -0.200 4.200 22 C -0.139 4.139 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.247 0.753 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.051 11.574 11.268 16.654 hybrid contribution -0.674 0.158 -0.938 1.166 sum 3.377 11.732 10.330 15.992 Atomic orbital electron populations 1.22033 0.95914 1.01606 1.02215 1.21103 0.95548 0.99874 0.93814 0.88707 1.21896 1.01747 0.92650 0.99201 1.20894 0.98261 0.93125 0.83382 1.55481 1.30755 1.60806 1.40564 0.99898 0.73947 0.72672 0.71535 1.93299 1.75189 1.81784 1.53743 1.93306 1.82596 1.66297 1.60845 1.30891 1.26706 1.08371 1.51377 0.86261 1.26014 1.02113 0.94922 0.91233 1.69991 1.37154 1.09080 1.36436 0.85207 0.75813 0.78962 0.79513 1.17367 1.18764 1.17196 1.22143 1.01493 0.98935 0.94579 1.21179 1.00420 0.95962 0.93755 0.91727 1.21797 1.01478 0.99733 0.97033 1.21623 1.01070 0.93518 0.97713 0.93721 0.91073 0.92907 0.89987 0.91469 0.91392 0.75290 0.89132 0.94035 0.90716 0.91988 0.91056 0.94007 0.90146 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.50 71.98 0.61 -2.95 16 2 C -0.08 -1.68 3.20 -10.79 -0.03 -1.72 16 3 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -2.90 4.98 30.59 0.15 -2.75 16 5 C 0.15 5.13 2.38 44.99 0.11 5.24 16 6 N -1.12 -44.93 5.47 -169.39 -0.93 -45.85 16 7 S 2.72 149.37 4.93 -56.49 -0.28 149.09 16 8 O -1.05 -64.47 18.02 -128.00 -2.31 -66.77 16 9 O -1.04 -63.22 17.28 -128.00 -2.21 -65.43 16 10 C -1.04 -58.02 9.58 67.73 0.65 -57.38 16 11 H 0.12 5.97 7.81 -2.91 -0.02 5.94 16 12 C 0.07 3.94 5.46 84.65 0.46 4.41 16 13 N -0.90 -54.39 13.19 21.44 0.28 -54.10 16 14 Si 0.99 41.63 29.54 68.60 2.03 43.66 16 15 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 16 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 17 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 18 C -0.13 -4.17 4.81 30.59 0.15 -4.03 16 19 C -0.09 -2.29 2.45 -10.79 -0.03 -2.32 16 20 H 0.06 1.72 6.43 -2.39 -0.02 1.70 16 21 C -0.14 -3.00 9.19 71.98 0.66 -2.33 16 22 C -0.10 -1.88 4.73 30.60 0.14 -1.73 16 23 H 0.04 1.19 4.81 -2.39 -0.01 1.18 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.61 6.14 -2.39 -0.01 2.60 16 29 H 0.41 14.19 8.84 -96.75 -0.85 13.33 16 30 H 0.30 16.31 8.31 -92.71 -0.77 15.54 16 31 H 0.04 1.61 7.64 -2.39 -0.02 1.59 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.69 304.55 -0.34 -76.03 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.20 Total: 28.94 kcal Atomic # 6 Polarization: -68.44 SS G_CDS: 2.87 Total: -65.56 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -0.64 Total: -99.96 kcal Atomic # 8 Polarization: -127.68 SS G_CDS: -4.52 Total: -132.20 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 149.37 SS G_CDS: -0.28 Total: 149.09 kcal Total: -75.69 -0.34 -76.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084978447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.547 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds