Wall clock time and date at job start Mon Mar 30 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 H 1.09002 * 110.43397 * 307.54589 * 3 2 1 5 5 C 1.54892 * 110.59697 * 70.16107 * 3 2 1 6 6 C 1.55017 * 102.75412 * 156.68660 * 5 3 2 7 7 C 1.54269 * 104.13585 * 322.05077 * 6 5 3 8 8 H 1.09003 * 110.03002 * 142.93280 * 7 6 5 9 9 N 1.46498 * 110.02940 * 264.31385 * 7 6 5 10 10 S 1.65602 * 119.99612 * 262.62930 * 9 7 6 11 11 O 1.42104 * 106.40175 * 178.81816 * 10 9 7 12 12 O 1.42095 * 106.40656 * 311.73868 * 10 9 7 13 13 C 1.76203 * 107.21635 * 65.28001 * 10 9 7 14 14 H 1.07994 * 119.99889 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99706 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00395 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99840 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47304 * 59.99977 * 17 15 13 19 19 H 1.48503 * 109.47087 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46874 * 300.00101 * 17 15 13 21 21 C 1.53881 * 106.64127 * 23.62305 * 7 6 5 22 22 H 1.09000 * 110.02876 * 240.64336 * 21 7 6 23 23 C 1.52996 * 110.03091 * 119.25799 * 21 7 6 24 24 H 1.09001 * 109.47312 * 59.99725 * 1 2 3 25 25 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46617 * 299.99759 * 1 2 3 27 27 H 1.09000 * 109.47220 * 240.00666 * 2 1 3 28 28 H 1.09001 * 109.47312 * 120.00275 * 2 1 3 29 29 H 1.08994 * 110.75871 * 274.99181 * 5 3 2 30 30 H 1.08999 * 110.75781 * 38.18122 * 5 3 2 31 31 H 1.08996 * 110.52749 * 203.38614 * 6 5 3 32 32 H 1.08995 * 110.50390 * 80.69969 * 6 5 3 33 33 H 0.97001 * 120.00384 * 82.91408 * 9 7 6 34 34 H 0.97001 * 120.00277 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.47053 * 61.45783 * 23 21 7 36 36 H 1.09003 * 109.46858 * 181.44887 * 23 21 7 37 37 H 1.08992 * 109.47651 * 301.45423 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 -0.8099 5 6 1.7577 2.1203 1.3639 6 6 2.8155 3.2525 1.4088 7 6 4.0700 2.6218 0.7697 8 1 4.5962 3.3637 0.1690 9 7 4.9566 2.1008 1.8130 10 16 6.2403 3.0065 2.3369 11 8 6.8777 2.2477 3.3554 12 8 6.9128 3.4616 1.1708 13 6 5.5814 4.4395 3.1225 14 1 4.5122 4.5786 3.1831 15 6 6.4310 5.3826 3.6608 16 7 7.7331 5.2129 3.5875 17 14 5.7325 6.9014 4.4944 18 1 4.8812 6.4903 5.6395 19 1 6.8458 7.7528 4.9852 20 1 4.9153 7.6689 3.5204 21 6 3.5772 1.4717 -0.1261 22 1 3.9985 0.5260 0.2150 23 6 3.9791 1.7303 -1.5795 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7492 2.5329 1.3888 30 1 1.9059 1.4166 2.1830 31 1 3.0185 3.5453 2.4389 32 1 2.4811 4.1108 0.8261 33 1 4.7943 1.2237 2.1941 34 1 8.3308 5.8763 3.9665 35 1 5.0657 1.7733 -1.6538 36 1 3.6036 0.9237 -2.2092 37 1 3.5544 2.6778 -1.9109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086097827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:43 Heat of formation + Delta-G solvation = -126.837157 kcal Electronic energy + Delta-G solvation = -18757.742395 eV Core-core repulsion = 15852.917031 eV Total energy + Delta-G solvation = -2904.825365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.04479 -35.15005 -34.19825 -33.88727 -33.05208 -31.39607 -30.89463 -26.61811 -26.02831 -24.54222 -22.32249 -20.07499 -19.63642 -18.74536 -17.35986 -16.14802 -15.60643 -15.16041 -14.84545 -14.56071 -13.94586 -13.86354 -13.31951 -13.25045 -12.90687 -12.45329 -12.31351 -12.00066 -11.75535 -11.60552 -11.31214 -11.18438 -11.15478 -10.90237 -10.60941 -10.43433 -10.39052 -10.30607 -10.23383 -10.17004 -10.11107 -9.91706 -9.20195 -8.90848 -8.41432 -6.65889 -5.27129 2.41992 3.10450 3.14966 3.20609 4.09380 4.64969 4.69422 4.72869 4.78140 4.96502 5.23091 5.31767 5.35923 5.52944 5.64683 5.65729 5.76467 5.78603 5.84962 5.90578 5.92669 5.95556 6.08621 6.16609 6.22429 6.25156 6.27862 6.38986 6.42279 6.57713 6.65226 6.74320 7.02657 7.38514 7.99704 8.05106 8.93404 10.28299 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.006391 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.441991 B = 4379.828176 C = 4847.710616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.074 0.926 5 C -0.117 4.117 6 C -0.147 4.147 7 C 0.158 3.842 8 H 0.093 0.907 9 N -1.129 6.129 10 S 2.714 3.286 11 O -1.010 7.010 12 O -1.009 7.009 13 C -1.019 5.019 14 H 0.104 0.896 15 C 0.133 3.867 16 N -0.846 5.846 17 Si 0.919 3.081 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.098 4.098 22 H 0.078 0.922 23 C -0.145 4.145 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.290 0.710 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -5.980 -6.515 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.108 4.108 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.186 4.186 7 C 0.050 3.950 8 H 0.111 0.889 9 N -0.882 5.882 10 S 2.814 3.186 11 O -1.001 7.001 12 O -0.999 6.999 13 C -1.152 5.152 14 H 0.122 0.878 15 C -0.085 4.085 16 N -0.476 5.476 17 Si 0.743 3.257 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.118 4.118 22 H 0.097 0.903 23 C -0.203 4.203 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.230 0.770 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.850 -5.987 -6.701 14.871 hybrid contribution -0.892 0.826 0.852 1.484 sum -12.741 -5.161 -5.849 14.939 Atomic orbital electron populations 1.21775 0.96187 1.01105 1.01764 1.21567 0.95530 0.96473 1.01799 1.22129 0.94901 0.95669 0.98087 0.90727 1.22564 0.98422 0.97729 0.96701 1.23016 0.95337 0.97550 1.02676 1.21257 0.90680 0.95025 0.88068 0.88903 1.56068 1.48834 1.31294 1.52041 1.00394 0.71126 0.74060 0.73041 1.93368 1.73852 1.73469 1.59386 1.93351 1.72300 1.82328 1.51919 1.30604 1.03717 1.26758 1.54158 0.87801 1.24737 0.93778 0.98374 0.91575 1.69894 1.02812 1.36153 1.38769 0.86233 0.79299 0.80320 0.79875 1.18932 1.20199 1.18888 1.22141 0.94857 0.99114 0.95654 0.90332 1.21872 1.01949 1.01210 0.95245 0.92990 0.93233 0.92622 0.92268 0.91954 0.92106 0.91506 0.89892 0.91224 0.76957 0.89921 0.92087 0.93008 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.79 37.16 0.36 -0.95 16 2 C -0.12 -1.15 5.28 -26.73 -0.14 -1.29 16 3 C -0.09 -1.02 2.38 -88.96 -0.21 -1.23 16 4 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 5 C -0.12 -1.44 5.68 -24.67 -0.14 -1.58 16 6 C -0.15 -2.24 6.54 -25.00 -0.16 -2.41 16 7 C 0.16 2.71 3.23 -66.81 -0.22 2.49 16 8 H 0.09 1.75 7.06 -51.93 -0.37 1.39 16 9 N -1.13 -22.30 5.41 -3.93 -0.02 -22.32 16 10 S 2.71 72.06 5.00 -107.50 -0.54 71.52 16 11 O -1.01 -29.91 18.02 -57.17 -1.03 -30.94 16 12 O -1.01 -29.60 17.37 -57.17 -0.99 -30.59 16 13 C -1.02 -27.77 9.72 30.60 0.30 -27.47 16 14 H 0.10 2.56 6.16 -52.49 -0.32 2.23 16 15 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 16 N -0.85 -25.05 13.19 55.43 0.73 -24.32 16 17 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.10 -1.33 2.84 -89.50 -0.25 -1.58 16 22 H 0.08 1.06 7.44 -51.93 -0.39 0.67 16 23 C -0.15 -1.83 8.84 37.16 0.33 -1.51 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.49 7.56 -51.93 -0.39 0.10 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.64 8.02 -51.93 -0.42 0.22 16 29 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 31 H 0.08 1.41 6.40 -51.93 -0.33 1.07 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 6.89 8.65 -34.47 -0.30 6.59 16 34 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -34.01 310.09 -8.28 -42.29 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.85 Total: 6.03 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: -0.23 Total: -31.91 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.71 Total: -46.64 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -2.02 Total: -61.53 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 72.06 SS G_CDS: -0.54 Total: 71.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.01 -8.28 -42.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086097827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.546 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds