Wall clock time and date at job start Mon Mar 30 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 H 1.09002 * 110.43397 * 307.54589 * 3 2 1 5 5 C 1.54892 * 110.59697 * 70.16107 * 3 2 1 6 6 C 1.55017 * 102.75412 * 156.68660 * 5 3 2 7 7 C 1.54269 * 104.13585 * 322.05077 * 6 5 3 8 8 H 1.09003 * 110.03002 * 142.93280 * 7 6 5 9 9 N 1.46498 * 110.02940 * 264.31385 * 7 6 5 10 10 S 1.65602 * 119.99612 * 262.62930 * 9 7 6 11 11 O 1.42104 * 106.40175 * 178.81816 * 10 9 7 12 12 O 1.42095 * 106.40656 * 311.73868 * 10 9 7 13 13 C 1.76203 * 107.21635 * 65.28001 * 10 9 7 14 14 H 1.07994 * 119.99889 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99706 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00395 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99840 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47304 * 59.99977 * 17 15 13 19 19 H 1.48503 * 109.47087 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46874 * 300.00101 * 17 15 13 21 21 C 1.53881 * 106.64127 * 23.62305 * 7 6 5 22 22 H 1.09000 * 110.02876 * 240.64336 * 21 7 6 23 23 C 1.52996 * 110.03091 * 119.25799 * 21 7 6 24 24 H 1.09001 * 109.47312 * 59.99725 * 1 2 3 25 25 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46617 * 299.99759 * 1 2 3 27 27 H 1.09000 * 109.47220 * 240.00666 * 2 1 3 28 28 H 1.09001 * 109.47312 * 120.00275 * 2 1 3 29 29 H 1.08994 * 110.75871 * 274.99181 * 5 3 2 30 30 H 1.08999 * 110.75781 * 38.18122 * 5 3 2 31 31 H 1.08996 * 110.52749 * 203.38614 * 6 5 3 32 32 H 1.08995 * 110.50390 * 80.69969 * 6 5 3 33 33 H 0.97001 * 120.00384 * 82.91408 * 9 7 6 34 34 H 0.97001 * 120.00277 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.47053 * 61.45783 * 23 21 7 36 36 H 1.09003 * 109.46858 * 181.44887 * 23 21 7 37 37 H 1.08992 * 109.47651 * 301.45423 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 -0.8099 5 6 1.7577 2.1203 1.3639 6 6 2.8155 3.2525 1.4088 7 6 4.0700 2.6218 0.7697 8 1 4.5962 3.3637 0.1690 9 7 4.9566 2.1008 1.8130 10 16 6.2403 3.0065 2.3369 11 8 6.8777 2.2477 3.3554 12 8 6.9128 3.4616 1.1708 13 6 5.5814 4.4395 3.1225 14 1 4.5122 4.5786 3.1831 15 6 6.4310 5.3826 3.6608 16 7 7.7331 5.2129 3.5875 17 14 5.7325 6.9014 4.4944 18 1 4.8812 6.4903 5.6395 19 1 6.8458 7.7528 4.9852 20 1 4.9153 7.6689 3.5204 21 6 3.5772 1.4717 -0.1261 22 1 3.9985 0.5260 0.2150 23 6 3.9791 1.7303 -1.5795 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7492 2.5329 1.3888 30 1 1.9059 1.4166 2.1830 31 1 3.0185 3.5453 2.4389 32 1 2.4811 4.1108 0.8261 33 1 4.7943 1.2237 2.1941 34 1 8.3308 5.8763 3.9665 35 1 5.0657 1.7733 -1.6538 36 1 3.6036 0.9237 -2.2092 37 1 3.5544 2.6778 -1.9109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086097827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:43 Heat of formation + Delta-G solvation = -151.948134 kcal Electronic energy + Delta-G solvation = -18758.831289 eV Core-core repulsion = 15852.917031 eV Total energy + Delta-G solvation = -2905.914258 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18094 -37.37596 -36.13064 -35.43377 -35.12262 -32.56373 -32.00916 -28.28640 -27.54605 -25.68267 -23.23764 -21.27175 -21.01085 -20.49390 -19.29777 -18.15264 -17.17547 -16.83354 -16.25311 -15.82288 -15.64450 -15.38036 -14.61147 -14.40831 -14.00380 -13.98931 -13.45758 -13.42365 -13.18118 -12.98912 -12.91150 -12.63898 -12.51533 -12.46740 -12.37066 -12.31620 -11.95705 -11.71176 -11.48673 -11.31869 -11.22470 -11.19742 -11.09711 -10.91547 -10.07823 -8.73365 -7.45545 0.39338 1.34602 1.36748 1.49432 2.21751 2.60108 3.01656 3.63434 3.66884 3.75643 3.93612 4.33214 4.37974 4.41757 4.47603 4.56748 4.64384 4.66553 4.70157 4.82782 4.87172 4.90032 5.03039 5.09527 5.17951 5.24102 5.27190 5.28112 5.39048 5.41249 5.45631 5.53238 5.60244 5.72328 5.96887 6.45900 6.80713 8.22968 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.006391 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.441991 B = 4379.828176 C = 4847.710616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.088 0.912 5 C -0.110 4.110 6 C -0.149 4.149 7 C 0.145 3.855 8 H 0.068 0.932 9 N -1.113 6.113 10 S 2.717 3.283 11 O -1.050 7.050 12 O -1.047 7.047 13 C -1.035 5.035 14 H 0.125 0.875 15 C 0.069 3.931 16 N -0.897 5.897 17 Si 0.989 3.011 18 H -0.251 1.251 19 H -0.266 1.266 20 H -0.249 1.249 21 C -0.095 4.095 22 H 0.079 0.921 23 C -0.145 4.145 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.413 0.587 34 H 0.298 0.702 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 -5.747 -6.774 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.106 0.894 5 C -0.148 4.148 6 C -0.188 4.188 7 C 0.037 3.963 8 H 0.086 0.914 9 N -0.871 5.871 10 S 2.818 3.182 11 O -1.040 7.040 12 O -1.037 7.037 13 C -1.168 5.168 14 H 0.143 0.857 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.807 3.193 18 H -0.175 1.175 19 H -0.190 1.190 20 H -0.172 1.172 21 C -0.115 4.115 22 H 0.097 0.903 23 C -0.203 4.203 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.246 0.754 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.721 -5.786 -6.971 17.285 hybrid contribution -0.007 0.690 0.872 1.112 sum -14.727 -5.096 -6.099 16.735 Atomic orbital electron populations 1.21756 0.95015 1.01788 1.02069 1.21548 0.96495 0.95136 1.02006 1.22085 0.92808 0.96984 0.97908 0.89419 1.22549 0.98386 0.96573 0.97244 1.23012 0.95333 0.99110 1.01391 1.21604 0.90630 0.96247 0.87799 0.91356 1.55453 1.47814 1.31232 1.52616 0.99926 0.71907 0.74218 0.72169 1.93301 1.75856 1.74244 1.60625 1.93296 1.74219 1.83127 1.53017 1.30928 1.04948 1.27013 1.53943 0.85720 1.26027 0.93970 1.02267 0.92081 1.70000 1.04593 1.37920 1.40302 0.85175 0.79080 0.75781 0.79216 1.17452 1.19008 1.17235 1.22146 0.96706 0.97391 0.95271 0.90293 1.21882 1.00666 1.02646 0.95076 0.92331 0.92454 0.92666 0.91568 0.92367 0.90016 0.91645 0.91816 0.89992 0.75356 0.89220 0.94282 0.90440 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.79 71.98 0.70 -1.38 16 2 C -0.11 -1.91 5.28 30.59 0.16 -1.75 16 3 C -0.08 -1.58 2.38 -9.72 -0.02 -1.60 16 4 H 0.09 1.57 7.85 -2.39 -0.02 1.55 16 5 C -0.11 -2.42 5.68 31.93 0.18 -2.24 16 6 C -0.15 -4.36 6.54 31.71 0.21 -4.15 16 7 C 0.14 4.91 3.23 45.72 0.15 5.06 16 8 H 0.07 2.64 7.06 -2.39 -0.02 2.63 16 9 N -1.11 -44.57 5.41 -166.36 -0.90 -45.47 16 10 S 2.72 148.74 5.00 -56.49 -0.28 148.46 16 11 O -1.05 -64.34 18.02 -128.00 -2.31 -66.65 16 12 O -1.05 -63.93 17.37 -128.00 -2.22 -66.15 16 13 C -1.03 -56.93 9.72 67.73 0.66 -56.27 16 14 H 0.12 6.10 6.16 -2.91 -0.02 6.08 16 15 C 0.07 3.87 5.46 84.65 0.46 4.33 16 16 N -0.90 -54.25 13.19 21.45 0.28 -53.97 16 17 Si 0.99 41.42 29.54 68.60 2.03 43.44 16 18 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 21 C -0.09 -2.44 2.84 -10.07 -0.03 -2.47 16 22 H 0.08 2.02 7.44 -2.39 -0.02 2.01 16 23 C -0.15 -3.47 8.84 71.98 0.64 -2.83 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.78 7.56 -2.39 -0.02 0.76 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.03 8.02 -2.39 -0.02 1.01 16 29 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 30 H 0.06 1.47 7.97 -2.39 -0.02 1.45 16 31 H 0.06 2.10 6.40 -2.39 -0.02 2.09 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.41 14.31 8.65 -96.74 -0.84 13.48 16 34 H 0.30 16.23 8.31 -92.71 -0.77 15.46 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.08 310.09 -0.08 -75.16 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.22 Total: 28.49 kcal Atomic # 6 Polarization: -66.42 SS G_CDS: 3.11 Total: -63.31 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -0.62 Total: -99.44 kcal Atomic # 8 Polarization: -128.28 SS G_CDS: -4.53 Total: -132.80 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 148.74 SS G_CDS: -0.28 Total: 148.46 kcal Total: -75.08 -0.08 -75.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086097827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.793 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds