Wall clock time and date at job start Mon Mar 30 2020 04:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 108.87249 * 2 1 4 4 C 1.45547 * 108.89675 * 118.50847 * 2 1 3 5 5 C 1.54238 * 112.40646 * 182.69008 * 4 2 1 6 6 C 1.50474 * 108.52388 * 280.01451 * 5 4 2 7 7 C 1.54074 * 112.49436 * 94.15038 * 6 5 4 8 8 C 1.53805 * 112.89102 * 318.12864 * 7 6 5 9 9 C 1.50471 * 112.64328 * 318.57801 * 8 7 6 10 10 H 1.09001 * 109.63259 * 334.08423 * 9 8 7 11 11 N 1.46504 * 109.63327 * 213.69549 * 9 8 7 12 12 S 1.65595 * 119.99792 * 95.38303 * 11 9 8 13 13 O 1.42097 * 106.40391 * 311.46315 * 12 11 9 14 14 O 1.42097 * 106.40323 * 178.54556 * 12 11 9 15 15 C 1.76204 * 107.22033 * 65.00456 * 12 11 9 16 16 H 1.08002 * 119.99492 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00023 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99886 * 179.72864 * 17 15 12 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.09001 * 109.47209 * 178.60607 * 1 2 3 24 24 H 1.09000 * 109.47077 * 298.60484 * 1 2 3 25 25 H 1.08999 * 109.47224 * 58.60221 * 1 2 3 26 26 H 1.09001 * 108.89232 * 303.44375 * 4 2 1 27 27 H 1.09002 * 108.89218 * 62.03187 * 4 2 1 28 28 H 1.09005 * 109.62726 * 39.72740 * 5 4 2 29 29 H 1.09005 * 109.62995 * 160.10888 * 5 4 2 30 30 H 1.08999 * 108.87718 * 214.92223 * 6 5 4 31 31 H 1.09000 * 108.87617 * 333.47276 * 6 5 4 32 32 H 1.08998 * 108.81060 * 79.14602 * 7 6 5 33 33 H 1.09005 * 108.80805 * 197.53362 * 7 6 5 34 34 H 1.09000 * 108.93569 * 197.66718 * 8 7 6 35 35 H 1.09000 * 108.67462 * 79.30686 * 8 7 6 36 36 H 0.96996 * 119.99699 * 275.39222 * 11 9 8 37 37 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8826 1.0315 0.0000 4 6 2.0013 -0.6572 1.2101 5 6 3.5393 -0.6437 1.3254 6 6 4.0935 -1.7406 0.4571 7 6 4.4803 -1.2413 -0.9483 8 6 3.4476 -0.2689 -1.5430 9 6 2.0295 -0.6986 -1.2812 10 1 1.9934 -1.7797 -1.1466 11 7 1.1821 -0.3151 -2.4131 12 16 0.8618 -1.4081 -3.6152 13 8 2.1118 -1.9707 -3.9896 14 8 -0.0018 -0.7527 -4.5338 15 6 -0.0764 -2.7147 -2.8959 16 1 -0.3291 -2.6835 -1.8463 17 6 -0.4877 -3.7767 -3.6728 18 7 -0.1804 -3.8145 -4.9510 19 14 -1.4758 -5.1656 -2.9085 20 1 -1.7868 -6.1812 -3.9462 21 1 -0.6849 -5.7954 -1.8208 22 1 -2.7411 -4.6243 -2.3507 23 1 -0.3634 -1.0274 -0.0250 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 0.5354 -0.8772 26 1 1.5779 -0.1483 2.0760 27 1 1.6581 -1.6918 1.2064 28 1 3.9233 0.3193 0.9887 29 1 3.8303 -0.8115 2.3624 30 1 4.9776 -2.1588 0.9384 31 1 3.3428 -2.5245 0.3570 32 1 5.4456 -0.7385 -0.8893 33 1 4.5718 -2.1000 -1.6135 34 1 3.6031 -0.2029 -2.6198 35 1 3.6039 0.7169 -1.1050 36 1 0.8088 0.5790 -2.4584 37 1 0.3324 -3.0931 -5.3480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088515509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:37 Heat of formation + Delta-G solvation = -121.385848 kcal Electronic energy + Delta-G solvation = -19351.021135 eV Core-core repulsion = 16446.432157 eV Total energy + Delta-G solvation = -2904.588978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.35592 -35.45872 -34.39155 -34.31760 -33.34278 -33.03200 -29.75903 -27.24690 -25.50922 -23.88587 -22.92128 -20.25645 -19.41428 -19.09919 -17.89843 -16.23828 -16.03877 -14.91934 -14.61955 -14.58024 -14.07814 -13.98210 -13.70547 -13.40100 -12.86424 -12.55016 -12.35700 -12.19467 -11.99675 -11.47215 -11.10811 -11.07345 -10.92890 -10.72527 -10.55998 -10.50394 -10.46368 -10.36601 -10.30444 -10.19331 -10.16021 -9.79576 -9.16716 -8.93736 -8.28382 -7.15684 -5.36159 2.21032 3.23470 3.24306 3.45191 4.16408 4.51623 4.68342 4.73907 4.77914 5.03808 5.27142 5.31074 5.36132 5.47726 5.52208 5.59205 5.64802 5.84060 5.88957 5.97346 6.06202 6.07212 6.13782 6.24017 6.27881 6.36615 6.39640 6.42582 6.50411 6.60073 6.61212 6.67704 6.88655 7.62407 7.86339 8.07294 8.65117 10.22308 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.008098 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.780937 B = 3456.838745 C = 3727.477325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.133 4.133 9 C 0.170 3.830 10 H 0.090 0.910 11 N -1.124 6.124 12 S 2.690 3.310 13 O -1.012 7.012 14 O -1.017 7.017 15 C -1.083 5.083 16 H 0.102 0.898 17 C 0.090 3.910 18 N -0.846 5.846 19 Si 1.078 2.922 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.401 0.599 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 5.806 12.918 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.172 4.172 9 C 0.062 3.938 10 H 0.108 0.892 11 N -0.878 5.878 12 S 2.792 3.208 13 O -1.001 7.001 14 O -1.007 7.007 15 C -1.217 5.217 16 H 0.120 0.880 17 C -0.128 4.128 18 N -0.475 5.475 19 Si 0.901 3.099 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.685 4.332 11.644 13.278 hybrid contribution 0.291 1.655 0.869 1.892 sum 4.976 5.987 12.513 14.737 Atomic orbital electron populations 1.21917 0.94796 1.02811 1.01124 1.20306 0.96532 0.99855 0.94619 0.91503 1.20550 0.95600 1.01675 0.97329 1.21347 0.95417 0.99587 0.99089 1.21402 1.00905 0.98564 0.95299 1.21811 0.97878 0.99735 0.95939 1.21833 0.94659 0.98786 1.01946 1.20293 0.88753 0.99775 0.84972 0.89213 1.55822 1.64831 1.27512 1.39632 1.00969 0.74059 0.73818 0.72004 1.93416 1.46060 1.78672 1.81988 1.93422 1.67940 1.77109 1.62237 1.31444 1.54739 1.25881 1.09677 0.87966 1.25926 0.93843 0.99675 0.93375 1.70850 1.30786 1.34041 1.11803 0.83477 0.75989 0.74581 0.75885 1.19660 1.20111 1.20141 0.91985 0.93399 0.92113 0.92224 0.91644 0.91723 0.92268 0.92546 0.91657 0.92552 0.91448 0.90887 0.92503 0.76692 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.61 37.16 0.32 -1.75 16 2 C -0.09 -1.25 2.05 -93.48 -0.19 -1.44 16 3 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 4 C -0.11 -1.34 4.45 -29.60 -0.13 -1.47 16 5 C -0.12 -1.27 5.61 -27.34 -0.15 -1.42 16 6 C -0.12 -1.53 5.32 -27.43 -0.15 -1.67 16 7 C -0.12 -1.62 5.84 -25.75 -0.15 -1.77 16 8 C -0.13 -2.07 5.03 -27.58 -0.14 -2.21 16 9 C 0.17 2.88 1.99 -68.54 -0.14 2.74 16 10 H 0.09 1.68 6.72 -51.93 -0.35 1.33 16 11 N -1.12 -21.83 4.35 -5.41 -0.02 -21.85 16 12 S 2.69 69.78 4.29 -107.50 -0.46 69.32 16 13 O -1.01 -28.54 17.27 -57.18 -0.99 -29.52 16 14 O -1.02 -29.29 17.64 -57.18 -1.01 -30.29 16 15 C -1.08 -29.54 9.58 30.60 0.29 -29.25 16 16 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 17 C 0.09 2.56 5.46 -17.82 -0.10 2.46 16 18 N -0.85 -25.96 13.66 55.43 0.76 -25.21 16 19 Si 1.08 23.96 29.90 -169.99 -5.08 18.87 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 25 H 0.06 0.87 6.60 -51.93 -0.34 0.53 16 26 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.06 0.82 7.46 -51.93 -0.39 0.43 16 28 H 0.06 0.68 6.99 -51.93 -0.36 0.32 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.88 6.63 -51.93 -0.34 0.53 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 35 H 0.06 0.75 6.65 -51.93 -0.35 0.41 16 36 H 0.40 6.80 7.79 -34.47 -0.27 6.53 16 37 H 0.28 8.72 6.52 -40.82 -0.27 8.46 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -33.59 297.73 -8.47 -42.06 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.62 Total: 7.93 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -0.53 Total: -35.80 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.73 Total: -47.06 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -2.00 Total: -59.82 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.87 kcal Atomic # 16 Polarization: 69.78 SS G_CDS: -0.46 Total: 69.32 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.59 -8.47 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088515509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.322 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds