Wall clock time and date at job start Mon Mar 30 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 108.87249 * 2 1 4 4 C 1.45547 * 108.89675 * 118.50847 * 2 1 3 5 5 C 1.54238 * 112.40646 * 182.69008 * 4 2 1 6 6 C 1.50474 * 108.52388 * 280.01451 * 5 4 2 7 7 C 1.54074 * 112.49436 * 94.15038 * 6 5 4 8 8 C 1.53805 * 112.89102 * 318.12864 * 7 6 5 9 9 C 1.50471 * 112.64328 * 318.57801 * 8 7 6 10 10 H 1.09001 * 109.63259 * 334.08423 * 9 8 7 11 11 N 1.46504 * 109.63327 * 213.69549 * 9 8 7 12 12 S 1.65595 * 119.99792 * 95.38303 * 11 9 8 13 13 O 1.42097 * 106.40391 * 311.46315 * 12 11 9 14 14 O 1.42097 * 106.40323 * 178.54556 * 12 11 9 15 15 C 1.76204 * 107.22033 * 65.00456 * 12 11 9 16 16 H 1.08002 * 119.99492 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00023 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99886 * 179.72864 * 17 15 12 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.09001 * 109.47209 * 178.60607 * 1 2 3 24 24 H 1.09000 * 109.47077 * 298.60484 * 1 2 3 25 25 H 1.08999 * 109.47224 * 58.60221 * 1 2 3 26 26 H 1.09001 * 108.89232 * 303.44375 * 4 2 1 27 27 H 1.09002 * 108.89218 * 62.03187 * 4 2 1 28 28 H 1.09005 * 109.62726 * 39.72740 * 5 4 2 29 29 H 1.09005 * 109.62995 * 160.10888 * 5 4 2 30 30 H 1.08999 * 108.87718 * 214.92223 * 6 5 4 31 31 H 1.09000 * 108.87617 * 333.47276 * 6 5 4 32 32 H 1.08998 * 108.81060 * 79.14602 * 7 6 5 33 33 H 1.09005 * 108.80805 * 197.53362 * 7 6 5 34 34 H 1.09000 * 108.93569 * 197.66718 * 8 7 6 35 35 H 1.09000 * 108.67462 * 79.30686 * 8 7 6 36 36 H 0.96996 * 119.99699 * 275.39222 * 11 9 8 37 37 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8826 1.0315 0.0000 4 6 2.0013 -0.6572 1.2101 5 6 3.5393 -0.6437 1.3254 6 6 4.0935 -1.7406 0.4571 7 6 4.4803 -1.2413 -0.9483 8 6 3.4476 -0.2689 -1.5430 9 6 2.0295 -0.6986 -1.2812 10 1 1.9934 -1.7797 -1.1466 11 7 1.1821 -0.3151 -2.4131 12 16 0.8618 -1.4081 -3.6152 13 8 2.1118 -1.9707 -3.9896 14 8 -0.0018 -0.7527 -4.5338 15 6 -0.0764 -2.7147 -2.8959 16 1 -0.3291 -2.6835 -1.8463 17 6 -0.4877 -3.7767 -3.6728 18 7 -0.1804 -3.8145 -4.9510 19 14 -1.4758 -5.1656 -2.9085 20 1 -1.7868 -6.1812 -3.9462 21 1 -0.6849 -5.7954 -1.8208 22 1 -2.7411 -4.6243 -2.3507 23 1 -0.3634 -1.0274 -0.0250 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 0.5354 -0.8772 26 1 1.5779 -0.1483 2.0760 27 1 1.6581 -1.6918 1.2064 28 1 3.9233 0.3193 0.9887 29 1 3.8303 -0.8115 2.3624 30 1 4.9776 -2.1588 0.9384 31 1 3.3428 -2.5245 0.3570 32 1 5.4456 -0.7385 -0.8893 33 1 4.5718 -2.1000 -1.6135 34 1 3.6031 -0.2029 -2.6198 35 1 3.6039 0.7169 -1.1050 36 1 0.8088 0.5790 -2.4584 37 1 0.3324 -3.0931 -5.3480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088515509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:36 Heat of formation + Delta-G solvation = -146.127878 kcal Electronic energy + Delta-G solvation = -19352.094030 eV Core-core repulsion = 16446.432157 eV Total energy + Delta-G solvation = -2905.661873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51261 -37.65634 -36.53675 -35.72395 -35.28988 -34.35585 -31.05176 -28.36426 -27.70517 -25.09101 -23.96680 -21.67335 -21.18095 -20.36216 -19.76729 -18.13782 -17.55090 -16.83371 -15.99154 -15.95322 -15.69531 -15.55799 -15.05203 -14.84092 -14.41734 -13.97196 -13.57345 -13.43403 -13.22320 -13.07033 -12.97040 -12.75758 -12.70591 -12.62935 -12.47792 -11.99348 -11.99154 -11.61379 -11.48005 -11.25453 -11.20369 -11.18819 -10.97519 -10.73268 -10.13128 -9.40431 -7.62360 0.18392 1.44343 1.48747 1.74103 2.32771 2.59360 2.69343 3.41145 3.57291 3.75732 3.99117 4.17752 4.23089 4.26184 4.28563 4.39547 4.48572 4.52887 4.64066 4.87632 4.90134 4.93612 5.03675 5.08746 5.15674 5.27230 5.30132 5.38470 5.39552 5.43728 5.45152 5.54554 5.57042 5.66158 5.81627 6.33383 6.49514 7.94578 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.008098 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.780937 B = 3456.838745 C = 3727.477325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.090 0.910 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.135 4.135 9 C 0.160 3.840 10 H 0.065 0.935 11 N -1.107 6.107 12 S 2.697 3.303 13 O -1.043 7.043 14 O -1.052 7.052 15 C -1.094 5.094 16 H 0.121 0.879 17 C 0.035 3.965 18 N -0.878 5.878 19 Si 1.117 2.883 20 H -0.269 1.269 21 H -0.249 1.249 22 H -0.250 1.250 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.415 0.585 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 6.551 16.247 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.174 4.174 9 C 0.053 3.947 10 H 0.083 0.917 11 N -0.866 5.866 12 S 2.799 3.201 13 O -1.032 7.032 14 O -1.042 7.042 15 C -1.228 5.228 16 H 0.139 0.861 17 C -0.175 4.175 18 N -0.509 5.509 19 Si 0.931 3.069 20 H -0.194 1.194 21 H -0.173 1.173 22 H -0.174 1.174 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.714 5.110 14.978 16.513 hybrid contribution 0.342 1.501 -0.128 1.545 sum 5.056 6.611 14.850 17.023 Atomic orbital electron populations 1.21964 0.95182 1.01764 1.02162 1.20287 0.96174 1.00733 0.93094 0.89198 1.20574 0.96565 1.01066 0.97145 1.21343 0.94406 0.99207 0.99976 1.21413 1.01321 0.98858 0.94466 1.21832 0.98623 0.98454 0.96552 1.21839 0.94144 1.00939 1.00443 1.20611 0.89362 0.99044 0.85700 0.91679 1.55244 1.65192 1.26971 1.39183 1.00425 0.73170 0.74040 0.72496 1.93370 1.47057 1.79715 1.83079 1.93361 1.68779 1.77685 1.64351 1.31812 1.54133 1.26186 1.10703 0.86067 1.27769 0.94104 1.02672 0.92983 1.71004 1.32706 1.33830 1.13357 0.83100 0.75941 0.71851 0.76000 1.19372 1.17320 1.17379 0.93954 0.90505 0.93098 0.89644 0.92910 0.90706 0.89988 0.90734 0.93522 0.90220 0.94561 0.93943 0.89313 0.74976 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.61 71.98 0.62 -3.28 16 2 C -0.08 -2.00 2.05 -12.65 -0.03 -2.02 16 3 H 0.09 1.80 7.48 -2.38 -0.02 1.78 16 4 C -0.12 -2.32 4.45 28.74 0.13 -2.19 16 5 C -0.11 -1.99 5.61 30.20 0.17 -1.82 16 6 C -0.12 -2.77 5.32 30.14 0.16 -2.61 16 7 C -0.12 -3.17 5.84 31.23 0.18 -2.98 16 8 C -0.13 -4.07 5.03 30.05 0.15 -3.92 16 9 C 0.16 5.30 1.99 44.59 0.09 5.39 16 10 H 0.07 2.48 6.72 -2.39 -0.02 2.47 16 11 N -1.11 -43.17 4.35 -171.04 -0.74 -43.91 16 12 S 2.70 144.42 4.29 -56.49 -0.24 144.18 16 13 O -1.04 -61.55 17.27 -128.00 -2.21 -63.76 16 14 O -1.05 -62.69 17.64 -128.00 -2.26 -64.95 16 15 C -1.09 -60.51 9.58 67.73 0.65 -59.86 16 16 H 0.12 6.03 7.81 -2.91 -0.02 6.01 16 17 C 0.03 1.99 5.46 84.65 0.46 2.46 16 18 N -0.88 -55.62 13.66 21.45 0.29 -55.33 16 19 Si 1.12 47.15 29.90 68.60 2.05 49.20 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 22 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 25 H 0.05 1.37 6.60 -2.39 -0.02 1.35 16 26 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 27 H 0.05 1.20 7.46 -2.39 -0.02 1.19 16 28 H 0.07 1.21 6.99 -2.38 -0.02 1.20 16 29 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.22 6.63 -2.39 -0.02 1.20 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.04 1.53 7.80 -2.39 -0.02 1.51 16 35 H 0.09 2.09 6.65 -2.39 -0.02 2.07 16 36 H 0.42 13.89 7.79 -96.75 -0.75 13.14 16 37 H 0.26 16.92 6.52 -92.70 -0.60 16.31 16 Total: -1.00 -75.61 297.73 -0.05 -75.66 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.47 Total: 29.75 kcal Atomic # 6 Polarization: -73.43 SS G_CDS: 2.59 Total: -70.84 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -0.45 Total: -99.23 kcal Atomic # 8 Polarization: -124.25 SS G_CDS: -4.47 Total: -128.71 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.05 Total: 49.20 kcal Atomic # 16 Polarization: 144.42 SS G_CDS: -0.24 Total: 144.18 kcal Total: -75.61 -0.05 -75.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088515509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.469 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds