Wall clock time and date at job start Mon Mar 30 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.60542 * 2 1 4 4 C 1.53189 * 109.60071 * 120.48634 * 2 1 3 5 5 N 1.46471 * 109.90010 * 182.38990 * 4 2 1 6 6 C 1.46893 * 111.00249 * 163.00095 * 5 4 2 7 7 C 1.52997 * 109.47638 * 191.90135 * 6 5 4 8 8 C 1.53002 * 109.47535 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46997 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.46472 * 112.46419 * 288.04337 * 5 4 2 18 18 C 1.53180 * 109.90444 * 71.95877 * 17 5 4 19 19 S 1.81813 * 108.67723 * 297.36598 * 18 17 5 20 20 O 1.42104 * 108.69798 * 166.57201 * 19 18 17 21 21 O 1.42097 * 108.70096 * 298.05588 * 19 18 17 22 22 H 1.08995 * 109.47698 * 180.32351 * 1 2 3 23 23 H 1.09004 * 109.46948 * 300.32510 * 1 2 3 24 24 H 1.08997 * 109.46795 * 60.32106 * 1 2 3 25 25 H 1.08998 * 109.39876 * 62.26194 * 4 2 1 26 26 H 1.08998 * 109.39949 * 302.52508 * 4 2 1 27 27 H 1.09005 * 109.46920 * 71.90228 * 6 5 4 28 28 H 1.09004 * 109.47361 * 311.90538 * 6 5 4 29 29 H 1.09005 * 109.46889 * 60.00074 * 7 6 5 30 30 H 1.09002 * 109.47401 * 300.00163 * 7 6 5 31 31 H 1.09005 * 109.46767 * 60.00250 * 8 7 6 32 32 H 1.09002 * 109.47113 * 300.00590 * 8 7 6 33 33 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.40104 * 192.09449 * 17 5 4 35 35 H 1.09005 * 109.39768 * 311.82255 * 17 5 4 36 36 H 1.09007 * 109.59956 * 57.12441 * 18 17 5 37 37 H 1.09005 * 109.60266 * 177.60654 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0438 -0.7321 1.2436 5 7 3.5074 -0.6867 1.2797 6 6 4.0112 -1.0094 2.6213 7 6 5.5003 -0.6674 2.7028 8 6 6.0249 -1.0029 4.1004 9 6 7.4917 -0.6667 4.1804 10 1 7.9989 -0.2545 3.3206 11 6 8.1861 -0.8852 5.3514 12 7 9.4661 -0.5913 5.4214 13 14 7.3089 -1.5988 6.8382 14 1 6.7560 -0.4951 7.6637 15 1 6.2028 -2.4797 6.3847 16 1 8.2706 -2.3889 7.6482 17 6 4.1193 -1.5506 0.2674 18 6 3.9216 -0.9432 -1.1249 19 16 2.1399 -0.8648 -1.4784 20 8 1.9364 -0.0306 -2.6107 21 8 1.6175 -2.1863 -1.4814 22 1 -0.3634 -1.0276 0.0058 23 1 -0.3633 0.5189 0.8871 24 1 -0.3633 0.5088 -0.8928 25 1 1.7145 -1.7708 1.2142 26 1 1.6445 -0.2522 2.1371 27 1 3.8715 -2.0728 2.8158 28 1 3.4640 -0.4291 3.3642 29 1 5.6400 0.3960 2.5083 30 1 6.0476 -1.2477 1.9600 31 1 5.8851 -2.0662 4.2954 32 1 5.4775 -0.4223 4.8430 33 1 9.9546 -0.7448 6.2453 34 1 5.1855 -1.6486 0.4716 35 1 3.6533 -2.5354 0.3023 36 1 4.3438 0.0615 -1.1489 37 1 4.4151 -1.5676 -1.8697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155704867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:33 Heat of formation + Delta-G solvation = -75.316972 kcal Electronic energy + Delta-G solvation = -18148.174017 eV Core-core repulsion = 15245.582735 eV Total energy + Delta-G solvation = -2902.591282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84328 -37.10662 -36.21059 -34.73373 -33.57178 -32.09340 -30.60426 -27.57086 -25.69563 -23.61922 -22.50389 -21.26726 -20.02946 -18.93797 -17.12332 -16.84625 -16.66469 -15.89774 -15.86000 -15.21959 -14.82219 -14.22596 -14.09845 -13.75030 -13.18443 -12.96117 -12.84291 -12.56533 -12.27530 -12.26094 -12.21996 -12.10525 -11.93512 -11.62930 -11.59457 -11.07821 -10.88861 -10.70785 -10.24539 -9.95612 -9.75260 -9.68787 -9.23786 -8.58256 -8.52252 -6.08327 -4.06698 -0.16478 2.46804 3.26792 3.34624 3.36962 3.38872 3.47098 3.90617 4.20484 4.39125 4.40966 4.53070 4.71786 4.83930 4.93847 5.09314 5.21319 5.25424 5.38562 5.48607 5.51042 5.53067 5.66389 5.69269 5.74101 5.99460 6.34732 6.39963 6.76676 6.91898 6.94356 7.24592 7.36936 7.74857 8.49612 8.96723 9.53984 11.05174 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.042979 B = 0.004098 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.327489 B = 6830.152607 C = 7156.147458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.557 4.557 3 H 0.146 0.854 4 C 0.067 3.933 5 N -0.556 5.556 6 C 0.058 3.942 7 C -0.101 4.101 8 C -0.014 4.014 9 C -0.521 4.521 10 H 0.072 0.928 11 C 0.066 3.934 12 N -0.903 5.903 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.266 1.266 16 H -0.288 1.288 17 C 0.057 3.943 18 C -0.592 4.592 19 S 2.408 3.592 20 O -0.946 6.946 21 O -0.941 6.941 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.143 0.857 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.108 -0.329 -10.707 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.667 4.667 3 H 0.164 0.836 4 C -0.062 4.062 5 N -0.281 5.281 6 C -0.069 4.069 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.559 4.559 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.542 5.542 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.191 1.191 16 H -0.214 1.214 17 C -0.071 4.071 18 C -0.723 4.723 19 S 2.591 3.409 20 O -0.943 6.943 21 O -0.938 6.938 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.294 -0.192 -11.443 20.737 hybrid contribution 0.023 -0.704 1.666 1.809 sum -17.271 -0.896 -9.777 19.866 Atomic orbital electron populations 1.21580 0.89920 1.03931 1.04443 1.29997 1.05995 1.14041 1.16686 0.83585 1.21896 0.88145 0.99086 0.97065 1.61260 1.05003 1.54971 1.06859 1.22335 0.98558 0.99162 0.86807 1.21557 0.90921 1.01724 0.99693 1.19554 0.97098 0.96236 0.92253 1.21119 0.92562 1.42579 0.99614 0.91034 1.25044 0.94716 0.95056 0.98713 1.69916 1.08082 1.48743 1.27491 0.86768 0.79755 0.79674 0.82983 1.20295 1.19094 1.21402 1.21872 1.04144 0.93595 0.87530 1.30187 1.24523 1.11719 1.05845 1.08423 0.79084 0.76094 0.77292 1.93577 1.84765 1.69250 1.46701 1.93570 1.77385 1.36033 1.86798 0.90817 0.89932 0.90979 0.92667 0.88404 0.94426 0.90459 0.91719 0.92584 0.96753 0.96992 0.92716 0.87115 0.92625 0.83874 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.19 37.15 0.34 -0.70 16 2 C -0.56 -4.82 3.23 -26.64 -0.09 -4.90 16 3 H 0.15 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.07 0.65 4.70 -3.96 -0.02 0.63 16 5 N -0.56 -6.60 4.41 -235.12 -1.04 -7.64 16 6 C 0.06 0.81 4.97 -3.83 -0.02 0.79 16 7 C -0.10 -1.82 5.12 -26.73 -0.14 -1.96 16 8 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 9 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 10 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 11 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 12 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 13 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.06 0.64 5.27 -3.96 -0.02 0.62 16 18 C -0.59 -5.51 6.58 37.25 0.24 -5.26 16 19 S 2.41 25.12 4.74 -107.50 -0.51 24.62 16 20 O -0.95 -12.60 18.11 -57.80 -1.05 -13.64 16 21 O -0.94 -12.42 18.06 -57.80 -1.04 -13.46 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 26 H 0.10 0.86 7.75 -51.93 -0.40 0.45 16 27 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.08 1.03 7.80 -51.93 -0.40 0.63 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.00 6.27 -51.93 -0.33 0.67 16 31 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.11 1.32 5.90 -51.93 -0.31 1.01 16 35 H 0.06 0.59 7.93 -51.93 -0.41 0.18 16 36 H 0.14 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.14 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -34.22 305.47 -9.16 -43.38 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.00 Total: -3.48 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -0.24 Total: -24.21 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.26 Total: -34.40 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -2.09 Total: -27.10 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 16 Polarization: 25.12 SS G_CDS: -0.51 Total: 24.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.22 -9.16 -43.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155704867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.934 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds