Wall clock time and date at job start Mon Mar 30 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.60542 * 2 1 4 4 C 1.53189 * 109.60071 * 120.48634 * 2 1 3 5 5 N 1.46471 * 109.90010 * 182.38990 * 4 2 1 6 6 C 1.46893 * 111.00249 * 163.00095 * 5 4 2 7 7 C 1.52997 * 109.47638 * 191.90135 * 6 5 4 8 8 C 1.53002 * 109.47535 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46997 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.46472 * 112.46419 * 288.04337 * 5 4 2 18 18 C 1.53180 * 109.90444 * 71.95877 * 17 5 4 19 19 S 1.81813 * 108.67723 * 297.36598 * 18 17 5 20 20 O 1.42104 * 108.69798 * 166.57201 * 19 18 17 21 21 O 1.42097 * 108.70096 * 298.05588 * 19 18 17 22 22 H 1.08995 * 109.47698 * 180.32351 * 1 2 3 23 23 H 1.09004 * 109.46948 * 300.32510 * 1 2 3 24 24 H 1.08997 * 109.46795 * 60.32106 * 1 2 3 25 25 H 1.08998 * 109.39876 * 62.26194 * 4 2 1 26 26 H 1.08998 * 109.39949 * 302.52508 * 4 2 1 27 27 H 1.09005 * 109.46920 * 71.90228 * 6 5 4 28 28 H 1.09004 * 109.47361 * 311.90538 * 6 5 4 29 29 H 1.09005 * 109.46889 * 60.00074 * 7 6 5 30 30 H 1.09002 * 109.47401 * 300.00163 * 7 6 5 31 31 H 1.09005 * 109.46767 * 60.00250 * 8 7 6 32 32 H 1.09002 * 109.47113 * 300.00590 * 8 7 6 33 33 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.40104 * 192.09449 * 17 5 4 35 35 H 1.09005 * 109.39768 * 311.82255 * 17 5 4 36 36 H 1.09007 * 109.59956 * 57.12441 * 18 17 5 37 37 H 1.09005 * 109.60266 * 177.60654 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0438 -0.7321 1.2436 5 7 3.5074 -0.6867 1.2797 6 6 4.0112 -1.0094 2.6213 7 6 5.5003 -0.6674 2.7028 8 6 6.0249 -1.0029 4.1004 9 6 7.4917 -0.6667 4.1804 10 1 7.9989 -0.2545 3.3206 11 6 8.1861 -0.8852 5.3514 12 7 9.4661 -0.5913 5.4214 13 14 7.3089 -1.5988 6.8382 14 1 6.7560 -0.4951 7.6637 15 1 6.2028 -2.4797 6.3847 16 1 8.2706 -2.3889 7.6482 17 6 4.1193 -1.5506 0.2674 18 6 3.9216 -0.9432 -1.1249 19 16 2.1399 -0.8648 -1.4784 20 8 1.9364 -0.0306 -2.6107 21 8 1.6175 -2.1863 -1.4814 22 1 -0.3634 -1.0276 0.0058 23 1 -0.3633 0.5189 0.8871 24 1 -0.3633 0.5088 -0.8928 25 1 1.7145 -1.7708 1.2142 26 1 1.6445 -0.2522 2.1371 27 1 3.8715 -2.0728 2.8158 28 1 3.4640 -0.4291 3.3642 29 1 5.6400 0.3960 2.5083 30 1 6.0476 -1.2477 1.9600 31 1 5.8851 -2.0662 4.2954 32 1 5.4775 -0.4223 4.8430 33 1 9.9546 -0.7448 6.2453 34 1 5.1855 -1.6486 0.4716 35 1 3.6533 -2.5354 0.3023 36 1 4.3438 0.0615 -1.1489 37 1 4.4151 -1.5676 -1.8697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155704867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:32 Heat of formation + Delta-G solvation = -101.614033 kcal Electronic energy + Delta-G solvation = -18149.314343 eV Core-core repulsion = 15245.582735 eV Total energy + Delta-G solvation = -2903.731608 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75928 -38.03486 -37.12860 -36.07340 -34.80843 -33.68613 -31.78302 -28.89459 -26.77702 -24.75785 -23.53422 -22.42399 -21.45599 -19.76771 -18.87772 -17.91392 -17.59335 -16.81929 -16.76480 -16.42333 -15.96827 -15.80490 -15.19895 -14.73803 -14.54727 -13.92032 -13.90523 -13.82884 -13.32858 -13.18667 -13.14262 -13.12184 -13.01269 -12.91278 -12.57995 -12.39083 -12.32207 -11.78205 -11.70036 -11.52378 -11.31072 -11.16653 -10.91459 -10.72984 -9.44714 -8.27169 -6.31241 -0.96726 1.38273 1.40252 1.51798 1.69180 2.38387 2.56089 2.63360 3.06101 3.08843 3.45331 3.65752 3.80786 3.96273 4.07053 4.15695 4.31871 4.38205 4.52936 4.58071 4.69566 4.73380 4.80380 4.85680 4.91965 4.98385 4.98868 5.15347 5.15590 5.54920 5.63533 5.69709 5.89818 6.01536 6.32190 6.78043 7.33612 8.89868 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.042979 B = 0.004098 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.327489 B = 6830.152607 C = 7156.147458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.540 4.540 3 H 0.162 0.838 4 C 0.063 3.937 5 N -0.561 5.561 6 C 0.067 3.933 7 C -0.094 4.094 8 C -0.012 4.012 9 C -0.532 4.532 10 H 0.029 0.971 11 C 0.000 4.000 12 N -0.955 5.955 13 Si 0.953 3.047 14 H -0.266 1.266 15 H -0.243 1.243 16 H -0.288 1.288 17 C 0.051 3.949 18 C -0.586 4.586 19 S 2.411 3.589 20 O -0.979 6.979 21 O -0.972 6.972 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.265 0.735 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.154 0.846 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.478 -0.575 -9.748 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.653 4.653 3 H 0.180 0.820 4 C -0.066 4.066 5 N -0.285 5.285 6 C -0.060 4.060 7 C -0.132 4.132 8 C -0.050 4.050 9 C -0.570 4.570 10 H 0.047 0.953 11 C -0.196 4.196 12 N -0.596 5.596 13 Si 0.777 3.223 14 H -0.191 1.191 15 H -0.166 1.166 16 H -0.214 1.214 17 C -0.078 4.078 18 C -0.717 4.717 19 S 2.599 3.401 20 O -0.976 6.976 21 O -0.970 6.970 22 H 0.092 0.908 23 H 0.121 0.879 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.134 0.866 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.172 0.828 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.692 -0.448 -10.533 22.337 hybrid contribution 0.833 -0.571 1.310 1.654 sum -18.860 -1.019 -9.223 21.019 Atomic orbital electron populations 1.21711 0.88759 1.04402 1.05712 1.29868 1.06933 1.14192 1.14260 0.82044 1.22029 0.86557 0.99827 0.98139 1.61174 1.06448 1.55136 1.05773 1.22101 0.95592 0.99788 0.88494 1.21382 0.94022 1.00918 0.96897 1.19514 0.93702 0.96519 0.95285 1.21539 0.95425 1.41746 0.98254 0.95259 1.26076 0.95417 0.95609 1.02491 1.70086 1.10173 1.50714 1.28643 0.85615 0.78955 0.79357 0.78422 1.19116 1.16590 1.21416 1.21930 1.03552 0.94130 0.88213 1.30138 1.23635 1.12696 1.05257 1.08147 0.79251 0.75223 0.77527 1.93533 1.85414 1.69662 1.49038 1.93524 1.78216 1.37718 1.87502 0.90848 0.87875 0.90552 0.92197 0.86609 0.93758 0.89083 0.92848 0.93080 0.96136 0.95958 0.92618 0.88194 0.92065 0.82820 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 2 C -0.54 -7.88 3.23 30.66 0.10 -7.79 16 3 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.06 1.02 4.70 86.45 0.41 1.43 16 5 N -0.56 -11.85 4.41 -897.78 -3.96 -15.81 16 6 C 0.07 1.70 4.97 86.30 0.43 2.13 16 7 C -0.09 -3.29 5.12 30.59 0.16 -3.14 16 8 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 9 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 10 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 11 C 0.00 0.02 5.47 84.66 0.46 0.48 16 12 N -0.96 -59.65 13.96 21.45 0.30 -59.35 16 13 Si 0.95 43.07 27.47 68.60 1.88 44.96 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.24 -9.96 6.54 99.48 0.65 -9.30 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 17 C 0.05 1.04 5.27 86.44 0.46 1.50 16 18 C -0.59 -10.02 6.58 72.04 0.47 -9.54 16 19 S 2.41 47.24 4.74 -56.49 -0.27 46.97 16 20 O -0.98 -25.40 18.11 -127.41 -2.31 -27.70 16 21 O -0.97 -24.82 18.06 -127.41 -2.30 -27.12 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.95 7.93 -2.39 -0.02 0.93 16 26 H 0.12 1.52 7.75 -2.39 -0.02 1.51 16 27 H 0.04 1.08 8.12 -2.38 -0.02 1.06 16 28 H 0.09 2.08 7.80 -2.38 -0.02 2.06 16 29 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 1.81 6.27 -2.39 -0.01 1.79 16 31 H 0.02 0.87 7.20 -2.38 -0.02 0.85 16 32 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 33 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.10 2.29 5.90 -2.38 -0.01 2.28 16 35 H 0.06 1.20 7.93 -2.38 -0.02 1.18 16 36 H 0.15 2.31 8.14 -2.38 -0.02 2.30 16 37 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -74.57 305.47 -2.17 -76.74 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.98 Total: 7.51 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.51 Total: -46.19 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -3.66 Total: -75.16 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -4.61 Total: -54.82 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 16 Polarization: 47.24 SS G_CDS: -0.27 Total: 46.97 kcal Total: -74.57 -2.17 -76.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155704867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.877 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds