Wall clock time and date at job start Mon Mar 30 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.55125 * 2 1 4 4 C 1.52998 * 117.50228 * 145.70404 * 2 1 3 5 5 C 1.52998 * 117.50175 * 214.32891 * 2 1 3 6 6 H 1.08997 * 117.49720 * 359.97438 * 5 2 1 7 7 N 1.46498 * 117.49960 * 145.02090 * 5 2 1 8 8 C 1.34780 * 119.99987 * 205.00042 * 7 5 2 9 9 O 1.21585 * 119.99770 * 0.02562 * 8 7 5 10 10 C 1.47536 * 120.00042 * 179.97438 * 8 7 5 11 11 C 1.39663 * 120.19608 * 359.97438 * 10 8 7 12 12 C 1.37837 * 119.91944 * 179.97438 * 11 10 8 13 13 C 1.38571 * 120.32203 * 359.97438 * 12 11 10 14 14 C 1.38034 * 120.40057 * 0.02562 * 13 12 11 15 15 C 1.38828 * 120.07264 * 359.74645 * 14 13 12 16 16 O 1.35519 * 120.16260 * 180.27290 * 15 14 13 17 17 C 1.34812 * 116.99988 * 354.39619 * 16 15 14 18 18 H 1.08006 * 119.99903 * 5.05520 * 17 16 15 19 19 C 1.38698 * 120.00013 * 185.05143 * 17 16 15 20 20 N 1.31530 * 119.99912 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00056 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47261 * 89.99845 * 21 19 17 23 23 H 1.48503 * 109.46993 * 209.99874 * 21 19 17 24 24 H 1.48503 * 109.47266 * 329.99902 * 21 19 17 25 25 H 1.08998 * 109.46912 * 205.67376 * 1 2 3 26 26 H 1.08997 * 109.47289 * 85.67255 * 1 2 3 27 27 H 1.09002 * 109.47318 * 325.66878 * 1 2 3 28 28 H 1.09000 * 117.50366 * 214.98194 * 4 2 1 29 29 H 1.08998 * 117.49665 * 0.02562 * 4 2 1 30 30 H 0.97001 * 120.00219 * 24.99993 * 7 5 2 31 31 H 1.08001 * 120.04124 * 359.96471 * 11 10 8 32 32 H 1.07988 * 119.83561 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.79764 * 179.97438 * 13 12 11 34 34 H 1.08004 * 119.96108 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99480 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8583 -1.2685 7 7 3.4933 -0.7901 -1.4416 8 6 3.8988 -1.5157 -2.5025 9 8 3.2214 -2.4445 -2.8985 10 6 5.1642 -1.1824 -3.1839 11 6 5.9448 -0.1154 -2.7335 12 6 7.1262 0.1906 -3.3740 13 6 7.5449 -0.5558 -4.4639 14 6 6.7838 -1.6131 -4.9202 15 6 5.5934 -1.9389 -4.2845 16 8 4.8476 -2.9800 -4.7275 17 6 5.2559 -3.5873 -5.8598 18 1 6.1847 -3.2929 -6.3257 19 6 4.4831 -4.5901 -6.4263 20 7 4.8817 -5.1829 -7.5307 21 14 2.8763 -5.0987 -5.6208 22 1 1.7667 -4.2770 -6.1676 23 1 2.6145 -6.5333 -5.9011 24 1 2.9703 -4.8900 -4.1536 25 1 -0.3633 -0.9262 0.4452 26 1 -0.3634 0.0775 -1.0247 27 1 -0.3634 0.8486 0.5796 28 1 3.1716 -0.8755 1.2681 29 1 1.6113 -1.8590 1.2674 30 1 4.0335 -0.0489 -1.1259 31 1 5.6229 0.4692 -1.8843 32 1 7.7289 1.0157 -3.0243 33 1 8.4719 -0.3083 -4.9597 34 1 7.1171 -2.1904 -5.7700 35 1 4.3410 -5.8839 -7.9270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171045097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:01 Heat of formation + Delta-G solvation = -11.304667 kcal Electronic energy + Delta-G solvation = -19079.712831 eV Core-core repulsion = 16044.453380 eV Total energy + Delta-G solvation = -3035.259451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.87144 -38.68690 -37.11750 -36.51029 -32.96687 -32.45541 -30.47230 -29.21806 -28.22964 -25.34018 -23.69756 -22.01935 -21.17003 -20.71160 -20.09904 -17.92492 -17.78604 -16.44036 -16.33561 -14.88031 -14.54682 -14.45761 -14.26202 -13.84484 -13.80168 -13.55916 -13.48933 -13.08487 -12.67533 -12.36616 -12.18406 -12.02000 -11.62720 -11.44969 -11.28052 -10.93366 -10.85926 -10.72193 -10.14803 -10.05139 -9.63322 -9.08626 -8.89655 -8.52011 -8.34811 -7.49385 -6.47924 -4.12976 1.54786 2.17210 3.30994 3.37024 3.38541 3.42839 3.66195 3.89792 4.35241 4.50394 4.69475 4.73442 4.80999 4.95727 5.08664 5.17671 5.23933 5.36370 5.59235 5.64864 5.65351 5.70236 5.84129 5.89154 6.02118 6.07384 6.16345 6.36135 6.53035 6.78229 6.83032 6.99771 7.13216 7.46492 7.66457 7.91704 7.94228 8.83013 8.88220 9.50517 10.57104 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.007154 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.520309 B = 3912.933739 C = 5496.011182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.168 4.168 3 H 0.104 0.896 4 C -0.194 4.194 5 C 0.094 3.906 6 H 0.136 0.864 7 N -0.713 5.713 8 C 0.564 3.436 9 O -0.516 6.516 10 C -0.227 4.227 11 C -0.041 4.041 12 C -0.221 4.221 13 C -0.050 4.050 14 C -0.226 4.226 15 C 0.201 3.799 16 O -0.165 6.165 17 C -0.397 4.397 18 H 0.109 0.891 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.238 1.238 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.395 0.605 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.139 0.861 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 11.026 13.264 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.188 4.188 3 H 0.122 0.878 4 C -0.232 4.232 5 C -0.012 4.012 6 H 0.153 0.847 7 N -0.365 5.365 8 C 0.355 3.645 9 O -0.392 6.392 10 C -0.232 4.232 11 C -0.059 4.059 12 C -0.240 4.240 13 C -0.069 4.069 14 C -0.245 4.245 15 C 0.144 3.856 16 O -0.065 6.065 17 C -0.471 4.471 18 H 0.126 0.874 19 C -0.134 4.134 20 N -0.505 5.505 21 Si 0.725 3.275 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.161 1.161 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.230 0.770 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.994 9.995 12.828 16.535 hybrid contribution -0.124 0.196 0.299 0.378 sum -3.118 10.192 13.127 16.909 Atomic orbital electron populations 1.21333 0.92444 1.01903 1.02117 1.22790 0.95785 0.94980 1.05237 0.87836 1.23604 1.02561 1.01462 0.95618 1.21616 0.88533 1.00536 0.90549 0.84659 1.45310 1.22924 1.35524 1.32725 1.18204 0.85470 0.81772 0.79074 1.90845 1.55580 1.28618 1.64123 1.18818 0.98715 1.02954 1.02686 1.20757 0.93783 0.94138 0.97268 1.20538 0.99004 1.03852 1.00619 1.20973 0.97780 0.93467 0.94667 1.21290 0.96671 1.01920 1.04651 1.19014 0.89676 0.85921 0.91038 1.83779 1.47073 1.36893 1.38754 1.20932 1.08852 1.17982 0.99384 0.87421 1.24498 0.99266 0.94829 0.94784 1.69644 1.39038 1.23901 1.17873 0.86197 0.81582 0.76753 0.82971 1.19913 1.21233 1.16127 0.92368 0.91975 0.92210 0.88731 0.88260 0.76993 0.86909 0.86977 0.86785 0.84371 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.19 37.16 0.38 -0.72 16 2 C -0.17 -1.74 6.33 -90.62 -0.57 -2.31 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.19 -2.06 10.10 -26.73 -0.27 -2.33 16 5 C 0.09 1.30 6.15 -67.93 -0.42 0.88 16 6 H 0.14 2.16 7.40 -51.93 -0.38 1.78 16 7 N -0.71 -10.84 5.52 -54.85 -0.30 -11.14 16 8 C 0.56 11.59 7.76 -12.47 -0.10 11.49 16 9 O -0.52 -12.97 14.73 -16.56 -0.24 -13.21 16 10 C -0.23 -4.63 5.89 -104.81 -0.62 -5.25 16 11 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 12 C -0.22 -3.41 10.03 -39.61 -0.40 -3.81 16 13 C -0.05 -0.86 10.03 -39.53 -0.40 -1.25 16 14 C -0.23 -4.77 9.16 -39.44 -0.36 -5.13 16 15 C 0.20 4.78 6.66 -38.60 -0.26 4.52 16 16 O -0.17 -4.56 6.67 -21.05 -0.14 -4.70 16 17 C -0.40 -11.38 9.95 30.90 0.31 -11.07 16 18 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 19 C 0.07 2.07 5.49 -17.51 -0.10 1.98 16 20 N -0.87 -25.29 13.96 55.48 0.77 -24.52 16 21 Si 0.90 23.30 28.62 -169.99 -4.86 18.43 16 22 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.24 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16 30 H 0.40 4.73 6.86 -40.82 -0.28 4.45 16 31 H 0.11 1.35 6.40 -52.49 -0.34 1.01 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.14 3.02 5.64 -52.48 -0.30 2.72 16 35 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -32.50 302.76 -7.47 -39.97 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.08 Total: 4.65 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.17 Total: -14.04 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.47 Total: -35.66 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.38 Total: -17.91 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.86 Total: 18.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.50 -7.47 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171045097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.661 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds