Wall clock time and date at job start Mon Mar 30 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.55125 * 2 1 4 4 C 1.52998 * 117.50228 * 145.70404 * 2 1 3 5 5 C 1.52998 * 117.50175 * 214.32891 * 2 1 3 6 6 H 1.08997 * 117.49720 * 359.97438 * 5 2 1 7 7 N 1.46498 * 117.49960 * 145.02090 * 5 2 1 8 8 C 1.34780 * 119.99987 * 205.00042 * 7 5 2 9 9 O 1.21585 * 119.99770 * 0.02562 * 8 7 5 10 10 C 1.47536 * 120.00042 * 179.97438 * 8 7 5 11 11 C 1.39663 * 120.19608 * 359.97438 * 10 8 7 12 12 C 1.37837 * 119.91944 * 179.97438 * 11 10 8 13 13 C 1.38571 * 120.32203 * 359.97438 * 12 11 10 14 14 C 1.38034 * 120.40057 * 0.02562 * 13 12 11 15 15 C 1.38828 * 120.07264 * 359.74645 * 14 13 12 16 16 O 1.35519 * 120.16260 * 180.27290 * 15 14 13 17 17 C 1.34812 * 116.99988 * 354.39619 * 16 15 14 18 18 H 1.08006 * 119.99903 * 5.05520 * 17 16 15 19 19 C 1.38698 * 120.00013 * 185.05143 * 17 16 15 20 20 N 1.31530 * 119.99912 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00056 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47261 * 89.99845 * 21 19 17 23 23 H 1.48503 * 109.46993 * 209.99874 * 21 19 17 24 24 H 1.48503 * 109.47266 * 329.99902 * 21 19 17 25 25 H 1.08998 * 109.46912 * 205.67376 * 1 2 3 26 26 H 1.08997 * 109.47289 * 85.67255 * 1 2 3 27 27 H 1.09002 * 109.47318 * 325.66878 * 1 2 3 28 28 H 1.09000 * 117.50366 * 214.98194 * 4 2 1 29 29 H 1.08998 * 117.49665 * 0.02562 * 4 2 1 30 30 H 0.97001 * 120.00219 * 24.99993 * 7 5 2 31 31 H 1.08001 * 120.04124 * 359.96471 * 11 10 8 32 32 H 1.07988 * 119.83561 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.79764 * 179.97438 * 13 12 11 34 34 H 1.08004 * 119.96108 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99480 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8583 -1.2685 7 7 3.4933 -0.7901 -1.4416 8 6 3.8988 -1.5157 -2.5025 9 8 3.2214 -2.4445 -2.8985 10 6 5.1642 -1.1824 -3.1839 11 6 5.9448 -0.1154 -2.7335 12 6 7.1262 0.1906 -3.3740 13 6 7.5449 -0.5558 -4.4639 14 6 6.7838 -1.6131 -4.9202 15 6 5.5934 -1.9389 -4.2845 16 8 4.8476 -2.9800 -4.7275 17 6 5.2559 -3.5873 -5.8598 18 1 6.1847 -3.2929 -6.3257 19 6 4.4831 -4.5901 -6.4263 20 7 4.8817 -5.1829 -7.5307 21 14 2.8763 -5.0987 -5.6208 22 1 1.7667 -4.2770 -6.1676 23 1 2.6145 -6.5333 -5.9011 24 1 2.9703 -4.8900 -4.1536 25 1 -0.3633 -0.9262 0.4452 26 1 -0.3634 0.0775 -1.0247 27 1 -0.3634 0.8486 0.5796 28 1 3.1716 -0.8755 1.2681 29 1 1.6113 -1.8590 1.2674 30 1 4.0335 -0.0489 -1.1259 31 1 5.6229 0.4692 -1.8843 32 1 7.7289 1.0157 -3.0243 33 1 8.4719 -0.3083 -4.9597 34 1 7.1171 -2.1904 -5.7700 35 1 4.3410 -5.8839 -7.9270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171045097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:01 Heat of formation + Delta-G solvation = -32.789967 kcal Electronic energy + Delta-G solvation = -19080.644504 eV Core-core repulsion = 16044.453380 eV Total energy + Delta-G solvation = -3036.191124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44046 -40.15537 -38.43352 -38.09326 -34.55733 -34.32712 -31.91224 -30.80821 -29.09712 -27.31199 -25.12783 -23.40694 -22.50528 -21.80147 -21.44786 -19.82188 -19.39395 -18.01230 -17.60959 -16.59943 -16.17118 -15.98082 -15.81747 -15.49152 -15.29827 -14.83557 -14.78641 -14.29600 -14.16864 -14.03739 -13.69447 -13.17296 -12.95994 -12.80917 -12.61889 -12.44699 -12.39961 -12.03946 -11.99638 -11.54295 -11.10802 -10.98174 -10.70817 -9.97493 -9.59939 -9.15071 -8.59249 -6.27873 0.03228 0.63763 1.22866 1.28356 1.56576 1.95371 2.11581 2.28419 2.72813 2.90818 3.02207 3.17078 3.73185 3.85696 3.93216 4.01325 4.07274 4.24475 4.41991 4.47188 4.54289 4.73770 4.81327 4.91098 4.92324 4.99846 5.05949 5.17045 5.27661 5.38523 5.46392 5.57992 5.61635 5.68831 5.82875 6.14667 6.61639 6.77942 7.37524 7.57795 8.51239 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.007154 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.520309 B = 3912.933739 C = 5496.011182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 H 0.125 0.875 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.686 5.686 8 C 0.556 3.444 9 O -0.575 6.575 10 C -0.234 4.234 11 C -0.030 4.030 12 C -0.188 4.188 13 C -0.042 4.042 14 C -0.250 4.250 15 C 0.160 3.840 16 O -0.210 6.210 17 C -0.403 4.403 18 H 0.093 0.907 19 C 0.027 3.973 20 N -0.910 5.910 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.264 1.264 24 H -0.268 1.268 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.414 0.586 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.115 0.885 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 15.007 16.724 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 H 0.143 0.857 4 C -0.212 4.212 5 C -0.059 4.059 6 H 0.119 0.881 7 N -0.339 5.339 8 C 0.346 3.654 9 O -0.454 6.454 10 C -0.239 4.239 11 C -0.048 4.048 12 C -0.207 4.207 13 C -0.060 4.060 14 C -0.270 4.270 15 C 0.107 3.893 16 O -0.114 6.114 17 C -0.479 4.479 18 H 0.110 0.890 19 C -0.174 4.174 20 N -0.550 5.550 21 Si 0.779 3.221 22 H -0.202 1.202 23 H -0.189 1.189 24 H -0.192 1.192 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.253 0.747 31 H 0.183 0.817 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.133 0.867 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.080 14.056 16.355 21.665 hybrid contribution -0.227 -0.604 -0.462 0.794 sum -2.306 13.452 15.892 20.949 Atomic orbital electron populations 1.21405 0.91734 1.03055 1.01999 1.22911 0.96324 0.94981 1.01772 0.85673 1.23692 1.03405 1.01464 0.92635 1.21699 0.88480 1.03196 0.92488 0.88123 1.45001 1.23314 1.34708 1.30847 1.18420 0.85323 0.81590 0.80039 1.90827 1.57203 1.31337 1.66079 1.19266 0.99380 1.03600 1.01614 1.21356 0.93039 0.92287 0.98137 1.21247 0.98159 1.03256 0.97989 1.21463 0.98219 0.91399 0.94886 1.21336 0.97001 1.03843 1.04774 1.19786 0.90620 0.86276 0.92618 1.83771 1.48933 1.39665 1.39062 1.20907 1.08405 1.18325 1.00300 0.88993 1.25031 1.01440 0.95418 0.95490 1.69685 1.40414 1.25638 1.19269 0.85423 0.79111 0.77444 0.80105 1.20214 1.18880 1.19250 0.92246 0.92953 0.89909 0.86986 0.87548 0.74714 0.81651 0.81419 0.83030 0.86672 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 10.19 71.98 0.73 -1.22 16 2 C -0.14 -2.43 6.33 -10.80 -0.07 -2.49 16 3 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 4 C -0.17 -3.14 10.10 30.59 0.31 -2.83 16 5 C 0.05 1.25 6.15 44.99 0.28 1.52 16 6 H 0.10 3.39 7.40 -2.39 -0.02 3.37 16 7 N -0.69 -19.48 5.52 -445.71 -2.46 -21.94 16 8 C 0.56 22.94 7.76 86.70 0.67 23.62 16 9 O -0.57 -30.52 14.73 16.91 0.25 -30.27 16 10 C -0.23 -9.33 5.89 -19.99 -0.12 -9.44 16 11 C -0.03 -0.80 9.54 22.52 0.21 -0.59 16 12 C -0.19 -4.60 10.03 22.25 0.22 -4.37 16 13 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 14 C -0.25 -10.72 9.16 22.36 0.20 -10.52 16 15 C 0.16 7.87 6.66 22.91 0.15 8.02 16 16 O -0.21 -12.46 6.67 0.87 0.01 -12.45 16 17 C -0.40 -24.96 9.95 67.93 0.68 -24.28 16 18 H 0.09 5.73 5.44 -2.91 -0.02 5.72 16 19 C 0.03 1.63 5.49 84.85 0.47 2.10 16 20 N -0.91 -56.16 13.96 21.62 0.30 -55.86 16 21 Si 0.96 51.64 28.62 68.60 1.96 53.60 16 22 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 23 H -0.26 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -15.63 7.11 99.48 0.71 -14.93 16 25 H 0.06 0.92 7.90 -2.39 -0.02 0.90 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.11 1.80 8.05 -2.39 -0.02 1.78 16 30 H 0.41 8.04 6.86 -92.71 -0.64 7.40 16 31 H 0.17 2.70 6.40 -2.91 -0.02 2.68 16 32 H 0.17 2.50 8.06 -2.92 -0.02 2.47 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 35 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -80.44 302.76 4.51 -75.92 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.48 Total: 12.52 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.97 Total: -21.53 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.16 Total: -77.79 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: 0.25 Total: -42.72 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 1.96 Total: 53.60 kcal Total: -80.44 4.51 -75.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171045097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.134 kcal (2) G-P(sol) polarization free energy of solvation -80.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds