Wall clock time and date at job start Mon Mar 30 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47333 * 2 1 4 4 N 1.46899 * 109.46939 * 240.00391 * 2 1 3 5 5 C 1.46900 * 111.00043 * 230.29893 * 4 2 1 6 6 C 1.50703 * 109.38321 * 305.64342 * 5 4 2 7 7 H 1.07998 * 120.00259 * 116.82456 * 6 5 4 8 8 C 1.37877 * 119.99627 * 296.82021 * 6 5 4 9 9 N 1.31513 * 120.00242 * 6.53291 * 8 6 5 10 10 Si 1.86795 * 119.99967 * 186.52691 * 8 6 5 11 11 H 1.48504 * 109.47431 * 90.00290 * 10 8 6 12 12 H 1.48507 * 109.47511 * 210.00347 * 10 8 6 13 13 H 1.48500 * 109.47310 * 330.00182 * 10 8 6 14 14 C 1.52589 * 109.38572 * 65.42554 * 5 4 2 15 15 C 1.52588 * 110.64082 * 50.17606 * 14 5 4 16 16 C 1.53041 * 109.98387 * 69.98444 * 15 14 5 17 17 S 1.81665 * 108.99906 * 296.35182 * 16 15 14 18 18 O 1.42105 * 108.66367 * 168.63354 * 17 16 15 19 19 O 1.42105 * 108.66208 * 299.96968 * 17 16 15 20 20 C 1.53029 * 109.39006 * 185.95510 * 5 4 2 21 21 H 1.08995 * 109.46658 * 294.52605 * 1 2 3 22 22 H 1.09000 * 109.47170 * 174.52849 * 1 2 3 23 23 H 1.08998 * 109.46931 * 54.52483 * 1 2 3 24 24 H 1.08994 * 109.47221 * 120.00149 * 2 1 3 25 25 H 1.09004 * 109.47023 * 59.99753 * 3 2 1 26 26 H 1.08996 * 109.47574 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47200 * 300.00464 * 3 2 1 28 28 H 1.00893 * 111.00429 * 106.34526 * 4 2 1 29 29 H 0.97000 * 120.00343 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.24420 * 170.47182 * 14 5 4 31 31 H 1.08991 * 109.24695 * 289.87729 * 14 5 4 32 32 H 1.09003 * 109.38268 * 190.13979 * 15 14 5 33 33 H 1.08993 * 109.38693 * 309.83009 * 15 14 5 34 34 H 1.09003 * 109.55065 * 56.21008 * 16 15 14 35 35 H 1.09005 * 109.54894 * 176.49696 * 16 15 14 36 36 H 1.09003 * 109.55005 * 63.34320 * 20 5 4 37 37 H 1.08996 * 109.55367 * 183.63357 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.0211 -1.7084 -0.8490 6 6 4.1211 -1.0688 -0.0415 7 1 4.2945 -1.3811 0.9777 8 6 4.9063 -0.0849 -0.6041 9 7 4.6160 0.3862 -1.7972 10 14 6.3824 0.5792 0.3284 11 1 7.5840 -0.2256 -0.0088 12 1 6.6125 1.9959 -0.0529 13 1 6.1242 0.4953 1.7884 14 6 2.3598 -2.8074 -0.0224 15 6 1.0905 -3.3056 -0.7074 16 6 1.4515 -4.0897 -1.9711 17 16 2.2663 -2.9714 -3.1483 18 8 2.8315 -3.7475 -4.1960 19 8 1.3699 -1.9163 -3.4682 20 6 3.6129 -2.3014 -2.1295 21 1 -0.3632 0.4266 0.9349 22 1 -0.3633 -1.0230 -0.0980 23 1 -0.3633 0.5964 -0.8369 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 2.3901 -0.0359 -1.8701 29 1 5.1686 1.0781 -2.1931 30 1 3.0557 -3.6384 0.0927 31 1 2.1059 -2.4134 0.9616 32 1 0.5412 -3.9534 -0.0242 33 1 0.4663 -2.4536 -0.9762 34 1 2.1282 -4.9046 -1.7139 35 1 0.5448 -4.4947 -2.4205 36 1 4.1369 -1.5228 -2.6838 37 1 4.3090 -3.1003 -1.8738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:30 Heat of formation + Delta-G solvation = -74.096269 kcal Electronic energy + Delta-G solvation = -20037.968505 eV Core-core repulsion = 17135.430157 eV Total energy + Delta-G solvation = -2902.538348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.18752 -35.96355 -35.01821 -34.13694 -33.02127 -30.77045 -27.28943 -26.94697 -26.17041 -25.36201 -21.96712 -19.98335 -18.77536 -17.83362 -16.83537 -15.63482 -15.46537 -14.91969 -14.75842 -14.48643 -14.09714 -13.30049 -13.06600 -12.81590 -12.49689 -12.21518 -12.09935 -11.83042 -11.34708 -11.29492 -11.21595 -11.12985 -10.99744 -10.74884 -10.65877 -10.44629 -10.26183 -10.21551 -10.09686 -9.88303 -9.66409 -9.29845 -9.15829 -8.54702 -7.06571 -6.19654 -4.39108 1.02871 3.13351 3.22910 3.24470 3.65404 4.19816 4.54902 4.79107 4.99310 5.26647 5.46593 5.49386 5.70158 5.90094 5.97873 6.06615 6.14254 6.21026 6.25821 6.38032 6.42867 6.46993 6.66646 6.69749 6.71830 6.79011 6.95528 7.15455 7.22598 7.32327 7.47885 7.62927 7.98168 8.45441 8.68714 9.04142 9.34148 10.72975 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.010661 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.284161 B = 2625.773661 C = 3216.721528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 C -0.162 4.162 4 N -0.677 5.677 5 C 0.245 3.755 6 C -0.526 4.526 7 H 0.060 0.940 8 C 0.074 3.926 9 N -0.886 5.886 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.116 4.116 15 C -0.104 4.104 16 C -0.605 4.605 17 S 2.397 3.603 18 O -0.986 6.986 19 O -0.923 6.923 20 C -0.557 4.557 21 H 0.036 0.964 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.365 0.635 29 H 0.269 0.731 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 -3.840 3.044 6.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.013 4.013 3 C -0.220 4.220 4 N -0.312 5.312 5 C 0.153 3.847 6 C -0.566 4.566 7 H 0.078 0.922 8 C -0.129 4.129 9 N -0.525 5.525 10 Si 0.718 3.282 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.733 4.733 17 S 2.583 3.417 18 O -0.983 6.983 19 O -0.920 6.920 20 C -0.691 4.691 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.188 0.812 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.175 0.825 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.225 -4.012 1.940 6.867 hybrid contribution 1.981 0.648 1.438 2.532 sum -3.244 -3.364 3.378 5.766 Atomic orbital electron populations 1.21947 0.97411 1.01021 0.99449 1.21087 0.92417 0.93020 0.94735 1.22312 1.03415 0.97251 0.99053 1.61136 1.38689 1.19110 1.12269 1.18070 0.88988 0.89455 0.88163 1.21591 1.16111 1.19787 0.99127 0.92151 1.24905 0.97194 0.95899 0.94932 1.69590 1.39027 1.28237 1.15614 0.86621 0.83111 0.78225 0.80244 1.20575 1.21131 1.19886 1.21715 0.95229 0.98423 1.00082 1.21285 0.99992 0.99584 0.93389 1.30205 1.12788 1.15062 1.15257 1.08546 0.79210 0.76614 0.77338 1.93479 1.79099 1.72306 1.53414 1.93541 1.63464 1.52705 1.82308 1.30152 1.15016 1.11315 1.12598 0.94505 0.92930 0.93409 0.91548 0.95108 0.90617 0.93943 0.81196 0.92039 0.92566 0.91270 0.92366 0.88018 0.86690 0.86882 0.82481 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.40 37.16 0.35 -2.01 16 2 C 0.10 1.89 2.30 -67.71 -0.16 1.74 16 3 C -0.16 -3.18 8.96 37.16 0.33 -2.85 16 4 N -0.68 -14.12 2.92 -94.41 -0.28 -14.40 16 5 C 0.24 5.03 0.25 -132.95 -0.03 5.00 16 6 C -0.53 -12.02 6.27 -34.44 -0.22 -12.23 16 7 H 0.06 1.40 7.75 -52.49 -0.41 1.00 16 8 C 0.07 1.73 3.43 -17.82 -0.06 1.67 16 9 N -0.89 -21.35 9.35 55.43 0.52 -20.83 16 10 Si 0.89 19.21 29.54 -169.99 -5.02 14.19 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 C -0.12 -2.04 4.13 -27.15 -0.11 -2.15 16 15 C -0.10 -1.65 5.62 -26.92 -0.15 -1.80 16 16 C -0.61 -9.23 6.35 37.18 0.24 -8.99 16 17 S 2.40 45.65 5.24 -107.50 -0.56 45.09 16 18 O -0.99 -21.25 18.10 -57.81 -1.05 -22.29 16 19 O -0.92 -20.10 16.45 -57.81 -0.95 -21.05 16 20 C -0.56 -11.33 5.01 37.17 0.19 -11.14 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.85 6.25 -51.93 -0.32 0.52 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 1.32 5.55 -51.93 -0.29 1.03 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.66 5.56 -51.93 -0.29 1.37 16 27 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 28 H 0.36 8.52 6.25 -39.30 -0.25 8.28 16 29 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 30 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.07 1.20 6.74 -51.93 -0.35 0.85 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.73 4.93 -51.93 -0.26 1.47 16 34 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.11 1.51 8.14 -51.92 -0.42 1.09 16 36 H 0.16 3.58 5.95 -51.93 -0.31 3.28 16 37 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -27.33 285.18 -8.07 -35.40 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.41 Total: 12.36 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 0.37 Total: -32.76 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.24 Total: -35.23 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -2.00 Total: -43.35 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: 45.65 SS G_CDS: -0.56 Total: 45.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.33 -8.07 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.695 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds