Wall clock time and date at job start Mon Mar 30 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47333 * 2 1 4 4 N 1.46899 * 109.46939 * 240.00391 * 2 1 3 5 5 C 1.46900 * 111.00043 * 230.29893 * 4 2 1 6 6 C 1.50703 * 109.38321 * 305.64342 * 5 4 2 7 7 H 1.07998 * 120.00259 * 116.82456 * 6 5 4 8 8 C 1.37877 * 119.99627 * 296.82021 * 6 5 4 9 9 N 1.31513 * 120.00242 * 6.53291 * 8 6 5 10 10 Si 1.86795 * 119.99967 * 186.52691 * 8 6 5 11 11 H 1.48504 * 109.47431 * 90.00290 * 10 8 6 12 12 H 1.48507 * 109.47511 * 210.00347 * 10 8 6 13 13 H 1.48500 * 109.47310 * 330.00182 * 10 8 6 14 14 C 1.52589 * 109.38572 * 65.42554 * 5 4 2 15 15 C 1.52588 * 110.64082 * 50.17606 * 14 5 4 16 16 C 1.53041 * 109.98387 * 69.98444 * 15 14 5 17 17 S 1.81665 * 108.99906 * 296.35182 * 16 15 14 18 18 O 1.42105 * 108.66367 * 168.63354 * 17 16 15 19 19 O 1.42105 * 108.66208 * 299.96968 * 17 16 15 20 20 C 1.53029 * 109.39006 * 185.95510 * 5 4 2 21 21 H 1.08995 * 109.46658 * 294.52605 * 1 2 3 22 22 H 1.09000 * 109.47170 * 174.52849 * 1 2 3 23 23 H 1.08998 * 109.46931 * 54.52483 * 1 2 3 24 24 H 1.08994 * 109.47221 * 120.00149 * 2 1 3 25 25 H 1.09004 * 109.47023 * 59.99753 * 3 2 1 26 26 H 1.08996 * 109.47574 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47200 * 300.00464 * 3 2 1 28 28 H 1.00893 * 111.00429 * 106.34526 * 4 2 1 29 29 H 0.97000 * 120.00343 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.24420 * 170.47182 * 14 5 4 31 31 H 1.08991 * 109.24695 * 289.87729 * 14 5 4 32 32 H 1.09003 * 109.38268 * 190.13979 * 15 14 5 33 33 H 1.08993 * 109.38693 * 309.83009 * 15 14 5 34 34 H 1.09003 * 109.55065 * 56.21008 * 16 15 14 35 35 H 1.09005 * 109.54894 * 176.49696 * 16 15 14 36 36 H 1.09003 * 109.55005 * 63.34320 * 20 5 4 37 37 H 1.08996 * 109.55367 * 183.63357 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.0211 -1.7084 -0.8490 6 6 4.1211 -1.0688 -0.0415 7 1 4.2945 -1.3811 0.9777 8 6 4.9063 -0.0849 -0.6041 9 7 4.6160 0.3862 -1.7972 10 14 6.3824 0.5792 0.3284 11 1 7.5840 -0.2256 -0.0088 12 1 6.6125 1.9959 -0.0529 13 1 6.1242 0.4953 1.7884 14 6 2.3598 -2.8074 -0.0224 15 6 1.0905 -3.3056 -0.7074 16 6 1.4515 -4.0897 -1.9711 17 16 2.2663 -2.9714 -3.1483 18 8 2.8315 -3.7475 -4.1960 19 8 1.3699 -1.9163 -3.4682 20 6 3.6129 -2.3014 -2.1295 21 1 -0.3632 0.4266 0.9349 22 1 -0.3633 -1.0230 -0.0980 23 1 -0.3633 0.5964 -0.8369 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 2.3901 -0.0359 -1.8701 29 1 5.1686 1.0781 -2.1931 30 1 3.0557 -3.6384 0.0927 31 1 2.1059 -2.4134 0.9616 32 1 0.5412 -3.9534 -0.0242 33 1 0.4663 -2.4536 -0.9762 34 1 2.1282 -4.9046 -1.7139 35 1 0.5448 -4.4947 -2.4205 36 1 4.1369 -1.5228 -2.6838 37 1 4.3090 -3.1003 -1.8738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:29 Heat of formation + Delta-G solvation = -92.795695 kcal Electronic energy + Delta-G solvation = -20038.779373 eV Core-core repulsion = 17135.430157 eV Total energy + Delta-G solvation = -2903.349216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71271 -37.56883 -36.62018 -35.55355 -34.67433 -32.33180 -28.81253 -28.38968 -27.70779 -27.00029 -23.38367 -21.49938 -20.31250 -19.32473 -18.48791 -17.22387 -17.00881 -16.45348 -16.43655 -15.94604 -15.63061 -14.84453 -14.60802 -14.26417 -13.90017 -13.70918 -13.59528 -13.24057 -12.94420 -12.90861 -12.82700 -12.75032 -12.62563 -12.43694 -12.15412 -12.06736 -11.76016 -11.68757 -11.56027 -11.37966 -11.19914 -10.86291 -10.66612 -10.25644 -8.72860 -7.94842 -6.20980 -0.45841 1.37370 1.44735 1.47984 2.19242 2.41706 3.08965 3.15008 3.46155 3.94392 4.07368 4.11024 4.40015 4.45201 4.51684 4.64358 4.77012 4.79646 4.87188 4.94299 5.03634 5.10827 5.22037 5.26255 5.32162 5.37144 5.52471 5.65028 5.66289 5.84255 5.85468 5.92347 6.27843 6.76342 7.02166 7.26415 7.54192 8.91223 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.010661 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.284161 B = 2625.773661 C = 3216.721528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.095 3.905 3 C -0.158 4.158 4 N -0.675 5.675 5 C 0.236 3.764 6 C -0.527 4.527 7 H 0.054 0.946 8 C 0.043 3.957 9 N -0.901 5.901 10 Si 0.929 3.071 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.273 1.273 14 C -0.116 4.116 15 C -0.103 4.103 16 C -0.579 4.579 17 S 2.404 3.596 18 O -1.016 7.016 19 O -0.957 6.957 20 C -0.568 4.568 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.347 0.653 29 H 0.263 0.737 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -5.632 4.461 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 C -0.216 4.216 4 N -0.308 5.308 5 C 0.144 3.856 6 C -0.568 4.568 7 H 0.072 0.928 8 C -0.158 4.158 9 N -0.541 5.541 10 Si 0.758 3.242 11 H -0.210 1.210 12 H -0.220 1.220 13 H -0.198 1.198 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.712 4.712 17 S 2.594 3.406 18 O -1.013 7.013 19 O -0.954 6.954 20 C -0.701 4.701 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.167 0.833 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.672 -5.778 3.352 9.442 hybrid contribution 2.425 1.178 1.050 2.893 sum -4.247 -4.601 4.402 7.654 Atomic orbital electron populations 1.21867 0.95184 1.01750 1.00281 1.21198 0.94132 0.92304 0.93932 1.22246 1.01632 0.98076 0.99650 1.61247 1.38310 1.18804 1.12399 1.18234 0.88658 0.90394 0.88273 1.21839 1.16509 1.19473 0.98996 0.92790 1.25307 0.98591 0.96526 0.95334 1.69710 1.39400 1.28550 1.16410 0.86021 0.81505 0.77218 0.79505 1.21043 1.21984 1.19782 1.21684 0.96340 0.97753 0.99608 1.21301 0.99023 0.99930 0.93906 1.29965 1.14032 1.14036 1.13119 1.08050 0.78370 0.76661 0.77549 1.93437 1.79870 1.72526 1.55477 1.93496 1.63699 1.54884 1.83358 1.30138 1.16142 1.11081 1.12740 0.92335 0.91944 0.94225 0.91990 0.93060 0.93278 0.94705 0.83251 0.92726 0.91103 0.91152 0.88617 0.89237 0.83593 0.83812 0.85561 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.40 71.98 0.68 -3.50 16 2 C 0.09 3.56 2.30 44.92 0.10 3.66 16 3 C -0.16 -6.16 8.96 71.98 0.65 -5.52 16 4 N -0.67 -27.89 2.92 -452.60 -1.32 -29.21 16 5 C 0.24 9.49 0.25 2.66 0.00 9.49 16 6 C -0.53 -24.03 6.27 25.60 0.16 -23.87 16 7 H 0.05 2.48 7.75 -2.91 -0.02 2.45 16 8 C 0.04 2.06 3.43 84.65 0.29 2.35 16 9 N -0.90 -44.85 9.35 21.45 0.20 -44.64 16 10 Si 0.93 39.95 29.54 68.60 2.03 41.98 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 14 C -0.12 -3.71 4.13 30.32 0.13 -3.58 16 15 C -0.10 -2.80 5.62 30.47 0.17 -2.63 16 16 C -0.58 -15.03 6.35 72.00 0.46 -14.58 16 17 S 2.40 88.76 5.24 -56.49 -0.30 88.47 16 18 O -1.02 -43.05 18.10 -127.40 -2.31 -45.35 16 19 O -0.96 -41.46 16.45 -127.40 -2.10 -43.55 16 20 C -0.57 -23.02 5.01 71.99 0.36 -22.66 16 21 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.06 1.83 6.25 -2.39 -0.01 1.81 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 2.37 5.55 -2.39 -0.01 2.36 16 25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.05 2.17 5.56 -2.39 -0.01 2.16 16 27 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.35 16.59 6.25 -89.70 -0.56 16.03 16 29 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 31 H 0.07 2.24 6.74 -2.39 -0.02 2.22 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.72 4.93 -2.39 -0.01 2.71 16 34 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.13 5.97 5.95 -2.39 -0.01 5.95 16 37 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 Total: -1.00 -59.33 285.18 -0.29 -59.62 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.51 Total: 33.52 kcal Atomic # 6 Polarization: -63.81 SS G_CDS: 2.99 Total: -60.82 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.12 Total: -73.86 kcal Atomic # 8 Polarization: -84.51 SS G_CDS: -4.40 Total: -88.91 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 88.76 SS G_CDS: -0.30 Total: 88.47 kcal Total: -59.33 -0.29 -59.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.178 kcal (2) G-P(sol) polarization free energy of solvation -59.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds