Wall clock time and date at job start Mon Mar 30 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 C 1.50706 * 109.46786 * 240.00592 * 2 1 3 5 5 H 1.07994 * 120.00254 * 245.12043 * 4 2 1 6 6 C 1.37884 * 119.99886 * 65.12396 * 4 2 1 7 7 N 1.31514 * 119.99931 * 5.71657 * 6 4 2 8 8 Si 1.86800 * 119.99785 * 185.72093 * 6 4 2 9 9 H 1.48501 * 109.46752 * 94.99651 * 8 6 4 10 10 H 1.48494 * 109.46734 * 214.99238 * 8 6 4 11 11 H 1.48497 * 109.47280 * 334.99446 * 8 6 4 12 12 N 1.46896 * 109.47357 * 120.00942 * 2 1 3 13 13 C 1.46896 * 111.00434 * 57.51465 * 12 2 1 14 14 C 1.46901 * 110.99556 * 293.55922 * 12 2 1 15 15 H 1.09003 * 109.38684 * 59.47191 * 14 12 2 16 16 C 1.52581 * 109.30259 * 299.72877 * 14 12 2 17 17 C 1.52599 * 110.64361 * 169.90875 * 16 14 12 18 18 C 1.53038 * 109.98374 * 69.98789 * 17 16 14 19 19 S 1.81699 * 109.07257 * 296.40856 * 18 17 16 20 20 O 1.42102 * 108.59653 * 299.86524 * 19 18 17 21 21 O 1.42106 * 108.73733 * 168.52104 * 19 18 17 22 22 C 1.53042 * 109.38460 * 179.25776 * 14 12 2 23 23 H 1.08994 * 109.47666 * 55.63867 * 1 2 3 24 24 H 1.08999 * 109.46737 * 175.64428 * 1 2 3 25 25 H 1.08999 * 109.46400 * 295.63816 * 1 2 3 26 26 H 0.97003 * 119.99979 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47417 * 296.04675 * 13 12 2 28 28 H 1.09002 * 109.46855 * 56.04706 * 13 12 2 29 29 H 1.08999 * 109.47218 * 176.04454 * 13 12 2 30 30 H 1.08998 * 109.24567 * 290.20551 * 16 14 12 31 31 H 1.09002 * 109.24544 * 49.65482 * 16 14 12 32 32 H 1.08997 * 109.38218 * 190.14408 * 17 16 14 33 33 H 1.08994 * 109.38379 * 309.83472 * 17 16 14 34 34 H 1.08996 * 109.54730 * 56.20600 * 18 17 16 35 35 H 1.08995 * 109.55116 * 176.40218 * 18 17 16 36 36 H 1.09000 * 109.54840 * 303.56173 * 22 14 12 37 37 H 1.08998 * 109.54879 * 63.74782 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5833 -1.6341 -1.1338 6 6 1.7885 -0.1807 -2.4801 7 7 1.2174 0.9985 -2.5945 8 14 2.2692 -1.1381 -4.0104 9 1 1.0988 -1.9105 -4.4989 10 1 2.7143 -0.1932 -5.0659 11 1 3.3766 -2.0717 -3.6827 12 7 2.0198 -0.6927 1.1993 13 6 1.5009 -2.0654 1.2632 14 6 1.6784 0.0564 2.4160 15 1 0.5958 0.1650 2.4823 16 6 2.3232 1.4379 2.3553 17 6 1.7922 2.3291 3.4744 18 6 2.3158 1.8390 4.8264 19 16 1.6681 0.1715 5.1448 20 8 0.2486 0.2333 5.1671 21 8 2.3592 -0.3820 6.2563 22 6 2.1884 -0.7055 3.6414 23 1 -0.3634 0.5800 -0.8483 24 1 -0.3633 -1.0247 -0.0781 25 1 -0.3632 0.4447 0.9265 26 1 1.0462 1.3712 -3.4735 27 1 0.4160 -2.0395 1.3648 28 1 1.7677 -2.5976 0.3501 29 1 1.9341 -2.5780 2.1221 30 1 3.4033 1.3352 2.4600 31 1 2.0976 1.8978 1.3932 32 1 2.1231 3.3543 3.3083 33 1 0.7027 2.2978 3.4756 34 1 3.4051 1.8078 4.8060 35 1 1.9849 2.5169 5.6131 36 1 1.7718 -1.7127 3.6440 37 1 3.2765 -0.7610 3.6095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:38 Heat of formation + Delta-G solvation = -63.247655 kcal Electronic energy + Delta-G solvation = -19033.855344 eV Core-core repulsion = 16131.787427 eV Total energy + Delta-G solvation = -2902.067917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.66838 -36.93040 -35.97859 -35.16734 -32.87679 -30.78842 -28.66264 -27.48151 -25.30343 -25.08577 -22.31299 -21.20035 -18.87879 -18.78735 -16.92790 -16.48569 -16.22446 -15.59152 -15.02699 -14.70801 -14.51905 -14.14833 -13.61724 -13.44636 -13.05043 -12.69633 -12.36898 -12.11545 -11.97201 -11.88544 -11.60289 -11.38565 -11.12810 -11.06207 -11.00993 -10.85522 -10.75766 -10.62258 -10.36605 -10.14396 -10.01184 -9.62910 -8.95346 -8.40964 -7.29601 -6.09605 -4.10219 0.08609 2.69616 3.26686 3.34315 3.37464 3.67471 3.97541 4.35860 4.54957 4.62263 4.79190 4.84702 4.94646 5.11573 5.25685 5.45461 5.56522 5.62915 5.78384 5.89941 5.99728 6.05541 6.26129 6.37021 6.48341 6.59979 6.71931 6.77502 6.99979 7.33883 7.53042 7.76007 8.01613 8.22967 8.48914 8.94767 9.53926 10.99965 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.040632 B = 0.005529 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.954268 B = 5063.171990 C = 5307.286913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.204 3.796 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.522 5.522 13 C 0.026 3.974 14 C 0.094 3.906 15 H 0.057 0.943 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.601 4.601 19 S 2.411 3.589 20 O -0.942 6.942 21 O -0.953 6.953 22 C -0.594 4.594 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.014 0.986 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 1.451 11.663 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.098 3.902 3 H 0.072 0.928 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.246 5.246 13 C -0.123 4.123 14 C -0.016 4.016 15 H 0.075 0.925 16 C -0.177 4.177 17 C -0.146 4.146 18 C -0.730 4.730 19 S 2.595 3.405 20 O -0.939 6.939 21 O -0.950 6.950 22 C -0.724 4.724 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.816 1.232 12.252 12.447 hybrid contribution -0.196 -0.193 -1.484 1.509 sum 1.620 1.040 10.768 10.939 Atomic orbital electron populations 1.22395 1.01128 1.00046 0.99517 1.19471 0.89473 0.95465 0.85779 0.92771 1.21085 1.34777 1.08540 0.89693 0.91898 1.24916 0.95362 0.94818 0.98998 1.69930 1.43524 1.16010 1.23745 0.86540 0.78663 0.79802 0.82754 1.20858 1.21302 1.19846 1.62459 1.59189 1.01782 1.01208 1.22347 0.96932 0.91316 1.01678 1.21217 0.97863 0.92679 0.89887 0.92536 1.21876 1.01441 0.93978 1.00434 1.21286 1.01767 1.01484 0.90069 1.30208 1.12695 1.22956 1.07149 1.08111 0.76103 0.78946 0.77384 1.93575 1.27388 1.86057 1.86850 1.93571 1.76052 1.76890 1.48471 1.30424 1.12820 1.12972 1.16230 0.90761 0.94688 0.96698 0.92953 0.96175 0.90312 0.93561 0.90356 0.88098 0.89533 0.90022 0.84994 0.85342 0.84808 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.22 37.16 0.31 -3.59 16 2 C 0.20 4.72 1.99 -68.86 -0.14 4.58 16 3 H 0.05 1.34 5.76 -51.93 -0.30 1.04 16 4 C -0.50 -13.03 7.94 -34.43 -0.27 -13.30 16 5 H 0.06 1.64 6.68 -52.49 -0.35 1.29 16 6 C 0.06 1.61 5.28 -17.82 -0.09 1.51 16 7 N -0.89 -24.50 11.99 55.43 0.66 -23.84 16 8 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 12 N -0.52 -10.17 4.59 -228.53 -1.05 -11.22 16 13 C 0.03 0.47 8.30 60.06 0.50 0.97 16 14 C 0.09 1.49 1.55 -67.91 -0.10 1.38 16 15 H 0.06 0.95 6.25 -51.93 -0.32 0.63 16 16 C -0.14 -1.97 4.96 -27.15 -0.13 -2.10 16 17 C -0.11 -1.19 5.73 -26.92 -0.15 -1.35 16 18 C -0.60 -5.67 6.34 37.18 0.24 -5.44 16 19 S 2.41 29.50 5.31 -107.50 -0.57 28.92 16 20 O -0.94 -14.74 17.96 -57.81 -1.04 -15.78 16 21 O -0.95 -14.15 18.11 -57.81 -1.05 -15.20 16 22 C -0.59 -7.56 5.35 37.18 0.20 -7.36 16 23 H 0.07 1.86 6.82 -51.93 -0.35 1.50 16 24 H 0.03 0.78 6.71 -51.93 -0.35 0.43 16 25 H 0.01 0.29 6.36 -51.93 -0.33 -0.04 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.02 0.36 6.59 -51.93 -0.34 0.02 16 28 H 0.08 1.55 6.42 -51.93 -0.33 1.21 16 29 H 0.05 0.71 6.14 -51.93 -0.32 0.39 16 30 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 31 H 0.10 1.66 5.76 -51.93 -0.30 1.36 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 34 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 1.64 6.13 -51.93 -0.32 1.32 16 37 H 0.14 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -31.93 291.09 -8.62 -40.55 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.28 Total: 1.19 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 0.34 Total: -24.68 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.39 Total: -35.06 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -2.08 Total: -30.98 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 29.50 SS G_CDS: -0.57 Total: 28.92 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.93 -8.62 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.697 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds