Wall clock time and date at job start Mon Mar 30 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 C 1.50706 * 109.46786 * 240.00592 * 2 1 3 5 5 H 1.07994 * 120.00254 * 245.12043 * 4 2 1 6 6 C 1.37884 * 119.99886 * 65.12396 * 4 2 1 7 7 N 1.31514 * 119.99931 * 5.71657 * 6 4 2 8 8 Si 1.86800 * 119.99785 * 185.72093 * 6 4 2 9 9 H 1.48501 * 109.46752 * 94.99651 * 8 6 4 10 10 H 1.48494 * 109.46734 * 214.99238 * 8 6 4 11 11 H 1.48497 * 109.47280 * 334.99446 * 8 6 4 12 12 N 1.46896 * 109.47357 * 120.00942 * 2 1 3 13 13 C 1.46896 * 111.00434 * 57.51465 * 12 2 1 14 14 C 1.46901 * 110.99556 * 293.55922 * 12 2 1 15 15 H 1.09003 * 109.38684 * 59.47191 * 14 12 2 16 16 C 1.52581 * 109.30259 * 299.72877 * 14 12 2 17 17 C 1.52599 * 110.64361 * 169.90875 * 16 14 12 18 18 C 1.53038 * 109.98374 * 69.98789 * 17 16 14 19 19 S 1.81699 * 109.07257 * 296.40856 * 18 17 16 20 20 O 1.42102 * 108.59653 * 299.86524 * 19 18 17 21 21 O 1.42106 * 108.73733 * 168.52104 * 19 18 17 22 22 C 1.53042 * 109.38460 * 179.25776 * 14 12 2 23 23 H 1.08994 * 109.47666 * 55.63867 * 1 2 3 24 24 H 1.08999 * 109.46737 * 175.64428 * 1 2 3 25 25 H 1.08999 * 109.46400 * 295.63816 * 1 2 3 26 26 H 0.97003 * 119.99979 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47417 * 296.04675 * 13 12 2 28 28 H 1.09002 * 109.46855 * 56.04706 * 13 12 2 29 29 H 1.08999 * 109.47218 * 176.04454 * 13 12 2 30 30 H 1.08998 * 109.24567 * 290.20551 * 16 14 12 31 31 H 1.09002 * 109.24544 * 49.65482 * 16 14 12 32 32 H 1.08997 * 109.38218 * 190.14408 * 17 16 14 33 33 H 1.08994 * 109.38379 * 309.83472 * 17 16 14 34 34 H 1.08996 * 109.54730 * 56.20600 * 18 17 16 35 35 H 1.08995 * 109.55116 * 176.40218 * 18 17 16 36 36 H 1.09000 * 109.54840 * 303.56173 * 22 14 12 37 37 H 1.08998 * 109.54879 * 63.74782 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5833 -1.6341 -1.1338 6 6 1.7885 -0.1807 -2.4801 7 7 1.2174 0.9985 -2.5945 8 14 2.2692 -1.1381 -4.0104 9 1 1.0988 -1.9105 -4.4989 10 1 2.7143 -0.1932 -5.0659 11 1 3.3766 -2.0717 -3.6827 12 7 2.0198 -0.6927 1.1993 13 6 1.5009 -2.0654 1.2632 14 6 1.6784 0.0564 2.4160 15 1 0.5958 0.1650 2.4823 16 6 2.3232 1.4379 2.3553 17 6 1.7922 2.3291 3.4744 18 6 2.3158 1.8390 4.8264 19 16 1.6681 0.1715 5.1448 20 8 0.2486 0.2333 5.1671 21 8 2.3592 -0.3820 6.2563 22 6 2.1884 -0.7055 3.6414 23 1 -0.3634 0.5800 -0.8483 24 1 -0.3633 -1.0247 -0.0781 25 1 -0.3632 0.4447 0.9265 26 1 1.0462 1.3712 -3.4735 27 1 0.4160 -2.0395 1.3648 28 1 1.7677 -2.5976 0.3501 29 1 1.9341 -2.5780 2.1221 30 1 3.4033 1.3352 2.4600 31 1 2.0976 1.8978 1.3932 32 1 2.1231 3.3543 3.3083 33 1 0.7027 2.2978 3.4756 34 1 3.4051 1.8078 4.8060 35 1 1.9849 2.5169 5.6131 36 1 1.7718 -1.7127 3.6440 37 1 3.2765 -0.7610 3.6095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:38 Heat of formation + Delta-G solvation = -87.625099 kcal Electronic energy + Delta-G solvation = -19034.912429 eV Core-core repulsion = 16131.787427 eV Total energy + Delta-G solvation = -2903.125002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04355 -38.03779 -37.06423 -36.45756 -34.60079 -32.21132 -30.10700 -28.70883 -27.25678 -26.42605 -23.64389 -22.47071 -20.37493 -19.78989 -18.38805 -17.93721 -17.36460 -16.73145 -16.61044 -16.03913 -15.80408 -15.53946 -15.05889 -14.58067 -14.31069 -14.02570 -13.77113 -13.49860 -13.22394 -13.07971 -13.05583 -12.87680 -12.63764 -12.59587 -12.47251 -12.34397 -12.09832 -12.02604 -11.90477 -11.71950 -11.17692 -11.05869 -10.82237 -10.39708 -8.87092 -8.11503 -6.17382 -0.87740 1.42197 1.44642 1.53837 1.75753 2.44230 2.72533 2.98567 3.20048 3.36241 3.65256 3.73700 3.86601 3.94071 4.17384 4.38289 4.48590 4.59484 4.71110 4.75141 4.76274 4.80973 4.90051 4.93722 5.08146 5.12792 5.18796 5.30718 5.38573 5.57254 5.70152 5.76713 6.20822 6.48037 6.74381 6.95522 7.50244 8.97262 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.040632 B = 0.005529 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.954268 B = 5063.171990 C = 5307.286913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.208 3.792 3 H 0.036 0.964 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.529 5.529 13 C 0.025 3.975 14 C 0.088 3.912 15 H 0.043 0.957 16 C -0.140 4.140 17 C -0.106 4.106 18 C -0.578 4.578 19 S 2.426 3.574 20 O -0.981 6.981 21 O -0.978 6.978 22 C -0.595 4.595 23 H 0.046 0.954 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 1.748 12.910 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 H 0.054 0.946 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.253 5.253 13 C -0.124 4.124 14 C -0.022 4.022 15 H 0.061 0.939 16 C -0.177 4.177 17 C -0.145 4.145 18 C -0.711 4.711 19 S 2.612 3.388 20 O -0.978 6.978 21 O -0.975 6.975 22 C -0.724 4.724 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.021 1.483 13.516 13.928 hybrid contribution -0.554 -0.252 -1.834 1.933 sum 2.466 1.231 11.681 12.002 Atomic orbital electron populations 1.22229 1.01161 0.99335 0.99158 1.19221 0.89269 0.94614 0.86774 0.94585 1.21404 1.34382 1.08362 0.91078 0.92509 1.25610 0.95608 0.95585 1.01630 1.70039 1.44630 1.17193 1.24161 0.85637 0.78358 0.78593 0.79587 1.20684 1.21132 1.19372 1.62352 1.59184 1.02297 1.01452 1.22376 0.96904 0.90927 1.02165 1.21331 0.97557 0.93852 0.89437 0.93936 1.21864 1.02445 0.93145 1.00279 1.21273 1.01442 1.02043 0.89738 1.30044 1.14461 1.19719 1.06830 1.07559 0.74926 0.79942 0.76364 1.93525 1.30065 1.87016 1.87185 1.93538 1.76179 1.78383 1.49418 1.30413 1.14211 1.12983 1.14811 0.93493 0.95046 0.94963 0.93065 0.96608 0.92203 0.90324 0.88757 0.91107 0.87151 0.90723 0.81869 0.82489 0.84588 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.39 8.22 71.98 0.59 -6.80 16 2 C 0.21 9.79 1.99 44.17 0.09 9.88 16 3 H 0.04 1.84 5.76 -2.39 -0.01 1.83 16 4 C -0.51 -26.98 7.94 25.60 0.20 -26.78 16 5 H 0.06 2.99 6.68 -2.91 -0.02 2.97 16 6 C 0.01 0.77 5.28 84.66 0.45 1.22 16 7 N -0.92 -51.42 11.99 21.45 0.26 -51.16 16 8 Si 0.95 42.72 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 N -0.53 -20.38 4.59 -876.92 -4.03 -24.41 16 13 C 0.02 0.88 8.30 127.69 1.06 1.94 16 14 C 0.09 2.70 1.55 44.79 0.07 2.77 16 15 H 0.04 1.42 6.25 -2.39 -0.01 1.41 16 16 C -0.14 -3.71 4.96 30.32 0.15 -3.56 16 17 C -0.11 -2.05 5.73 30.47 0.17 -1.87 16 18 C -0.58 -8.50 6.34 71.99 0.46 -8.04 16 19 S 2.43 53.91 5.31 -56.49 -0.30 53.61 16 20 O -0.98 -29.65 17.96 -127.40 -2.29 -31.94 16 21 O -0.98 -26.87 18.11 -127.40 -2.31 -29.17 16 22 C -0.59 -13.87 5.35 72.00 0.39 -13.49 16 23 H 0.05 2.41 6.82 -2.39 -0.02 2.39 16 24 H 0.03 1.42 6.71 -2.39 -0.02 1.41 16 25 H 0.03 1.33 6.36 -2.39 -0.02 1.31 16 26 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.02 0.56 6.59 -2.39 -0.02 0.55 16 28 H 0.06 2.35 6.42 -2.39 -0.02 2.34 16 29 H 0.08 2.28 6.14 -2.39 -0.01 2.26 16 30 H 0.09 2.16 8.09 -2.39 -0.02 2.15 16 31 H 0.07 2.34 5.76 -2.39 -0.01 2.32 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.57 8.02 -2.39 -0.02 1.56 16 34 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.14 3.09 6.13 -2.39 -0.01 3.07 16 37 H 0.16 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -69.38 291.09 -1.95 -71.33 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.06 Total: 11.73 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 3.63 Total: -44.73 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -3.77 Total: -75.58 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -4.59 Total: -61.11 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 53.91 SS G_CDS: -0.30 Total: 53.61 kcal Total: -69.38 -1.95 -71.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.296 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds