Wall clock time and date at job start Mon Mar 30 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46901 * 111.00222 * 183.95414 * 12 2 1 14 14 C 1.46910 * 110.99769 * 60.00666 * 12 2 1 15 15 H 1.08997 * 109.37904 * 309.99522 * 14 12 2 16 16 C 1.52586 * 109.38635 * 69.78509 * 14 12 2 17 17 C 1.52628 * 110.61533 * 190.25044 * 16 14 12 18 18 C 1.53035 * 109.90257 * 289.85816 * 17 16 14 19 19 S 1.81678 * 108.99459 * 63.69013 * 18 17 16 20 20 O 1.42104 * 108.66031 * 191.37461 * 19 18 17 21 21 O 1.42093 * 108.66033 * 60.03341 * 19 18 17 22 22 C 1.53033 * 109.38534 * 190.20891 * 14 12 2 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46990 * 59.99975 * 13 12 2 28 28 H 1.08995 * 109.47184 * 180.02562 * 13 12 2 29 29 H 1.09010 * 109.47004 * 300.00655 * 13 12 2 30 30 H 1.09006 * 109.24505 * 310.44570 * 16 14 12 31 31 H 1.09002 * 109.24156 * 69.84449 * 16 14 12 32 32 H 1.09006 * 109.39753 * 169.74937 * 17 16 14 33 33 H 1.09000 * 109.38078 * 49.96723 * 17 16 14 34 34 H 1.09004 * 109.54878 * 303.84180 * 18 17 16 35 35 H 1.08989 * 109.63356 * 183.59533 * 18 17 16 36 36 H 1.09003 * 109.55061 * 296.04749 * 22 14 12 37 37 H 1.09000 * 109.54957 * 56.33642 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0196 -0.6926 -1.1993 13 6 3.4850 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4211 15 1 0.4723 0.1315 -2.3549 16 6 2.2505 1.3206 -2.5661 17 6 1.6062 2.1454 -3.6771 18 6 1.9234 1.5231 -5.0387 19 16 1.1728 -0.1293 -5.1230 20 8 1.6840 -0.8031 -6.2650 21 8 -0.2329 0.0012 -4.9618 22 6 1.8591 -0.9087 -3.6324 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 0.7164 1.1670 3.4843 27 1 3.8029 -1.3532 -0.3065 28 1 3.8209 -1.3111 -2.0860 29 1 3.9187 0.2051 -1.1590 30 1 2.1768 1.8672 -1.6259 31 1 3.3014 1.1545 -2.8029 32 1 1.9956 3.1630 -3.6448 33 1 0.5261 2.1667 -3.5317 34 1 3.0036 1.4395 -5.1588 35 1 1.5156 2.1498 -5.8317 36 1 2.9387 -1.0140 -3.7399 37 1 1.4074 -1.8909 -3.4936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:40 Heat of formation + Delta-G solvation = -63.800191 kcal Electronic energy + Delta-G solvation = -19045.107210 eV Core-core repulsion = 16143.015334 eV Total energy + Delta-G solvation = -2902.091877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.79177 -36.92246 -35.96273 -34.95503 -32.88019 -30.66071 -29.00676 -27.54768 -25.63289 -24.33602 -22.56159 -21.20782 -18.90433 -18.74403 -16.75929 -16.48443 -16.27807 -15.59811 -15.25951 -14.67340 -14.44794 -14.17052 -13.60334 -13.24609 -13.13213 -13.02673 -12.31173 -12.11064 -11.97023 -11.90966 -11.50114 -11.37828 -11.21268 -11.15111 -10.99093 -10.88587 -10.56551 -10.42531 -10.23708 -10.13316 -10.04513 -9.77014 -8.93842 -8.48421 -7.28804 -6.07814 -4.12431 0.08795 2.70961 3.25890 3.33432 3.37036 3.68854 3.95798 4.35067 4.56454 4.57976 4.77703 4.84998 4.97335 5.11178 5.24659 5.33601 5.47914 5.54097 5.75304 5.90261 5.97438 6.02876 6.21783 6.25631 6.37622 6.66869 6.80497 7.00565 7.06324 7.43153 7.61997 7.76103 8.09935 8.23417 8.48676 8.93372 9.52830 10.98922 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.005452 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.494696 B = 5134.517967 C = 5247.757361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 H 0.006 0.994 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.523 5.523 13 C 0.029 3.971 14 C 0.091 3.909 15 H 0.103 0.897 16 C -0.176 4.176 17 C -0.104 4.104 18 C -0.603 4.603 19 S 2.413 3.587 20 O -0.953 6.953 21 O -0.938 6.938 22 C -0.588 4.588 23 H 0.087 0.913 24 H 0.011 0.989 25 H 0.036 0.964 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 2.193 -12.075 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.104 3.896 3 H 0.023 0.977 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.246 5.246 13 C -0.119 4.119 14 C -0.020 4.020 15 H 0.121 0.879 16 C -0.215 4.215 17 C -0.143 4.143 18 C -0.732 4.732 19 S 2.596 3.404 20 O -0.950 6.950 21 O -0.935 6.935 22 C -0.718 4.718 23 H 0.105 0.895 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.416 1.462 -12.565 12.879 hybrid contribution 1.322 0.713 1.391 2.047 sum 3.738 2.175 -11.175 11.982 Atomic orbital electron populations 1.21908 0.97624 0.99985 1.00139 1.19334 0.92428 0.92306 0.85559 0.97665 1.21139 1.31288 1.12331 0.89700 0.91838 1.24924 0.95145 0.95069 0.99037 1.69884 1.36752 1.22957 1.23529 0.86519 0.78446 0.80063 0.82503 1.20831 1.21233 1.19856 1.62372 1.09477 1.51412 1.01374 1.22301 0.88858 0.99439 1.01294 1.21435 1.01509 0.89053 0.90000 0.87929 1.22485 1.00764 0.97827 1.00461 1.21226 1.02688 1.00657 0.89754 1.30223 1.13612 1.22937 1.06425 1.08073 0.76574 0.78465 0.77278 1.93569 1.81915 1.72458 1.47078 1.93582 1.27465 1.85801 1.86666 1.30354 1.13041 1.12599 1.15848 0.89491 0.96971 0.94483 0.92915 0.90415 0.93739 0.96314 0.88808 0.91006 0.89931 0.89739 0.85250 0.85300 0.85309 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.77 37.16 0.33 -2.92 16 2 C 0.21 4.91 1.86 -68.87 -0.13 4.79 16 3 H 0.01 0.15 6.42 -51.93 -0.33 -0.19 16 4 C -0.51 -13.19 7.92 -34.44 -0.27 -13.47 16 5 H 0.06 1.65 6.39 -52.49 -0.34 1.32 16 6 C 0.06 1.59 5.31 -17.82 -0.09 1.49 16 7 N -0.89 -24.52 11.33 55.43 0.63 -23.89 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.52 -10.22 4.57 -228.53 -1.04 -11.26 16 13 C 0.03 0.52 8.38 60.06 0.50 1.02 16 14 C 0.09 1.43 1.84 -67.90 -0.12 1.31 16 15 H 0.10 1.74 5.68 -51.93 -0.30 1.44 16 16 C -0.18 -2.40 3.98 -27.13 -0.11 -2.51 16 17 C -0.10 -1.14 5.74 -26.90 -0.15 -1.30 16 18 C -0.60 -5.63 6.34 37.18 0.24 -5.39 16 19 S 2.41 29.46 5.31 -107.50 -0.57 28.89 16 20 O -0.95 -14.15 18.10 -57.81 -1.05 -15.19 16 21 O -0.94 -14.73 17.93 -57.81 -1.04 -15.77 16 22 C -0.59 -7.48 5.45 37.17 0.20 -7.27 16 23 H 0.09 2.24 6.08 -51.93 -0.32 1.92 16 24 H 0.01 0.24 6.20 -51.93 -0.32 -0.08 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.08 1.50 6.23 -51.93 -0.32 1.18 16 28 H 0.04 0.64 6.38 -51.93 -0.33 0.31 16 29 H 0.02 0.32 6.68 -51.92 -0.35 -0.03 16 30 H 0.09 1.50 6.29 -51.93 -0.33 1.17 16 31 H 0.07 0.86 6.95 -51.93 -0.36 0.50 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 34 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 1.37 6.66 -51.93 -0.35 1.02 16 37 H 0.14 1.80 8.14 -51.93 -0.42 1.37 16 LS Contribution 290.67 15.07 4.38 4.38 Total: -1.00 -32.02 290.67 -8.63 -40.65 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.30 Total: 0.75 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 0.39 Total: -24.25 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.42 Total: -35.16 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -2.08 Total: -30.96 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 29.46 SS G_CDS: -0.57 Total: 28.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.02 -8.63 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.152 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds