Wall clock time and date at job start Mon Mar 30 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46901 * 111.00222 * 183.95414 * 12 2 1 14 14 C 1.46910 * 110.99769 * 60.00666 * 12 2 1 15 15 H 1.08997 * 109.37904 * 309.99522 * 14 12 2 16 16 C 1.52586 * 109.38635 * 69.78509 * 14 12 2 17 17 C 1.52628 * 110.61533 * 190.25044 * 16 14 12 18 18 C 1.53035 * 109.90257 * 289.85816 * 17 16 14 19 19 S 1.81678 * 108.99459 * 63.69013 * 18 17 16 20 20 O 1.42104 * 108.66031 * 191.37461 * 19 18 17 21 21 O 1.42093 * 108.66033 * 60.03341 * 19 18 17 22 22 C 1.53033 * 109.38534 * 190.20891 * 14 12 2 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46990 * 59.99975 * 13 12 2 28 28 H 1.08995 * 109.47184 * 180.02562 * 13 12 2 29 29 H 1.09010 * 109.47004 * 300.00655 * 13 12 2 30 30 H 1.09006 * 109.24505 * 310.44570 * 16 14 12 31 31 H 1.09002 * 109.24156 * 69.84449 * 16 14 12 32 32 H 1.09006 * 109.39753 * 169.74937 * 17 16 14 33 33 H 1.09000 * 109.38078 * 49.96723 * 17 16 14 34 34 H 1.09004 * 109.54878 * 303.84180 * 18 17 16 35 35 H 1.08989 * 109.63356 * 183.59533 * 18 17 16 36 36 H 1.09003 * 109.55061 * 296.04749 * 22 14 12 37 37 H 1.09000 * 109.54957 * 56.33642 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0196 -0.6926 -1.1993 13 6 3.4850 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4211 15 1 0.4723 0.1315 -2.3549 16 6 2.2505 1.3206 -2.5661 17 6 1.6062 2.1454 -3.6771 18 6 1.9234 1.5231 -5.0387 19 16 1.1728 -0.1293 -5.1230 20 8 1.6840 -0.8031 -6.2650 21 8 -0.2329 0.0012 -4.9618 22 6 1.8591 -0.9087 -3.6324 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 0.7164 1.1670 3.4843 27 1 3.8029 -1.3532 -0.3065 28 1 3.8209 -1.3111 -2.0860 29 1 3.9187 0.2051 -1.1590 30 1 2.1768 1.8672 -1.6259 31 1 3.3014 1.1545 -2.8029 32 1 1.9956 3.1630 -3.6448 33 1 0.5261 2.1667 -3.5317 34 1 3.0036 1.4395 -5.1588 35 1 1.5156 2.1498 -5.8317 36 1 2.9387 -1.0140 -3.7399 37 1 1.4074 -1.8909 -3.4936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:40 Heat of formation + Delta-G solvation = -88.379057 kcal Electronic energy + Delta-G solvation = -19046.173030 eV Core-core repulsion = 16143.015334 eV Total energy + Delta-G solvation = -2903.157696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12683 -38.02390 -37.04775 -36.31918 -34.53975 -32.08239 -30.60915 -28.56109 -27.40513 -25.92498 -23.73828 -22.63747 -20.34774 -19.74575 -18.37018 -17.82799 -17.42563 -16.81513 -16.60316 -15.98243 -15.89874 -15.42893 -15.04433 -14.65197 -14.35028 -14.03460 -13.77460 -13.47559 -13.17761 -13.06558 -12.94546 -12.82373 -12.75151 -12.61027 -12.38358 -12.29262 -12.08235 -11.95422 -11.77806 -11.70032 -11.38161 -11.07730 -10.80694 -10.48120 -8.83298 -8.09969 -6.20536 -0.87457 1.41641 1.44172 1.53460 1.77500 2.42991 2.74337 2.97677 3.19132 3.45801 3.62045 3.72467 3.81490 3.94052 4.15654 4.37113 4.40547 4.62105 4.67539 4.75123 4.82091 4.89578 4.93865 5.04030 5.05989 5.14374 5.19654 5.30579 5.36052 5.56605 5.75761 5.82848 6.28845 6.42597 6.76154 6.94877 7.48445 8.95676 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.005452 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.494696 B = 5134.517967 C = 5247.757361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.215 3.785 3 H -0.016 1.016 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.536 5.536 13 C 0.030 3.970 14 C 0.085 3.915 15 H 0.083 0.917 16 C -0.173 4.173 17 C -0.105 4.105 18 C -0.579 4.579 19 S 2.426 3.574 20 O -0.979 6.979 21 O -0.980 6.980 22 C -0.588 4.588 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 2.610 -13.540 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 H 0.002 0.998 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.260 5.260 13 C -0.118 4.118 14 C -0.025 4.025 15 H 0.101 0.899 16 C -0.212 4.212 17 C -0.144 4.144 18 C -0.711 4.711 19 S 2.612 3.388 20 O -0.976 6.976 21 O -0.977 6.977 22 C -0.718 4.718 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.001 1.836 -14.046 14.720 hybrid contribution 0.844 0.619 1.803 2.085 sum 4.845 2.456 -12.243 13.394 Atomic orbital electron populations 1.21756 0.98057 0.99115 0.99851 1.19066 0.92059 0.91208 0.86821 0.99839 1.21472 1.31001 1.12203 0.91043 0.92292 1.25654 0.95463 0.95767 1.01743 1.70008 1.37788 1.24156 1.23950 0.85592 0.77989 0.79036 0.79204 1.20151 1.21216 1.19597 1.62231 1.10763 1.51666 1.01351 1.22321 0.87654 0.99826 1.02026 1.21471 1.00685 0.90905 0.89487 0.89854 1.22413 1.02098 0.96369 1.00311 1.21229 1.02138 1.01511 0.89499 1.30043 1.15476 1.19332 1.06231 1.07543 0.75561 0.79507 0.76139 1.93536 1.82031 1.74185 1.47827 1.93530 1.30456 1.86773 1.86932 1.30331 1.14874 1.12012 1.14548 0.92110 0.94920 0.95459 0.93028 0.92709 0.90114 0.95829 0.91708 0.88721 0.87465 0.90630 0.81891 0.82503 0.82657 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.77 71.98 0.63 -5.62 16 2 C 0.22 10.31 1.86 44.17 0.08 10.39 16 3 H -0.02 -0.81 6.42 -2.39 -0.02 -0.83 16 4 C -0.52 -27.50 7.92 25.60 0.20 -27.29 16 5 H 0.06 3.11 6.39 -2.91 -0.02 3.09 16 6 C 0.01 0.67 5.31 84.66 0.45 1.12 16 7 N -0.92 -51.65 11.33 21.45 0.24 -51.40 16 8 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.54 -20.78 4.57 -876.93 -4.01 -24.79 16 13 C 0.03 1.01 8.38 127.69 1.07 2.08 16 14 C 0.08 2.59 1.84 44.79 0.08 2.67 16 15 H 0.08 2.83 5.68 -2.39 -0.01 2.82 16 16 C -0.17 -4.36 3.98 30.33 0.12 -4.24 16 17 C -0.10 -1.96 5.74 30.48 0.17 -1.79 16 18 C -0.58 -8.22 6.34 71.99 0.46 -7.76 16 19 S 2.43 54.02 5.31 -56.49 -0.30 53.72 16 20 O -0.98 -26.88 18.10 -127.40 -2.31 -29.19 16 21 O -0.98 -30.09 17.93 -127.40 -2.28 -32.37 16 22 C -0.59 -13.74 5.45 71.99 0.39 -13.35 16 23 H 0.06 3.24 6.08 -2.39 -0.01 3.22 16 24 H 0.03 1.38 6.20 -2.39 -0.01 1.37 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 27 H 0.05 2.09 6.23 -2.39 -0.01 2.07 16 28 H 0.08 2.10 6.38 -2.39 -0.02 2.08 16 29 H 0.02 0.76 6.68 -2.38 -0.02 0.74 16 30 H 0.06 2.04 6.29 -2.38 -0.01 2.03 16 31 H 0.09 1.93 6.95 -2.39 -0.02 1.91 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.08 1.58 8.00 -2.39 -0.02 1.56 16 34 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.16 2.73 6.66 -2.39 -0.02 2.71 16 37 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -70.52 290.67 -1.90 -72.43 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.06 Total: 10.51 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 3.66 Total: -43.80 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -3.76 Total: -76.19 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -4.59 Total: -61.56 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 54.02 SS G_CDS: -0.30 Total: 53.72 kcal Total: -70.52 -1.90 -72.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.954 kcal (2) G-P(sol) polarization free energy of solvation -70.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds