Wall clock time and date at job start Mon Mar 30 2020 05:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46913 * 2 1 4 4 C 1.50700 * 109.46953 * 239.99916 * 2 1 3 5 5 H 1.08001 * 120.00183 * 240.00059 * 4 2 1 6 6 C 1.37875 * 119.99758 * 60.00463 * 4 2 1 7 7 N 1.31510 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99653 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47258 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47127 * 120.00099 * 8 6 4 11 11 H 1.48505 * 109.46581 * 239.99390 * 8 6 4 12 12 N 1.46904 * 109.46870 * 120.00302 * 2 1 3 13 13 C 1.46889 * 111.00271 * 58.95252 * 12 2 1 14 14 C 1.46902 * 110.99806 * 294.99599 * 12 2 1 15 15 H 1.09003 * 109.38537 * 60.21629 * 14 12 2 16 16 C 1.52586 * 109.38239 * 180.02562 * 14 12 2 17 17 C 1.52592 * 110.64089 * 190.03914 * 16 14 12 18 18 C 1.53031 * 109.98835 * 290.01523 * 17 16 14 19 19 S 1.81669 * 108.99897 * 63.65024 * 18 17 16 20 20 O 1.42099 * 108.66329 * 60.02740 * 19 18 17 21 21 O 1.42101 * 108.66667 * 191.37258 * 19 18 17 22 22 C 1.53039 * 109.30166 * 300.47808 * 14 12 2 23 23 H 1.08998 * 109.46703 * 299.99621 * 1 2 3 24 24 H 1.08997 * 109.47031 * 59.99998 * 1 2 3 25 25 H 1.08997 * 109.46913 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00237 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47852 * 296.04757 * 13 12 2 28 28 H 1.09001 * 109.47251 * 56.04790 * 13 12 2 29 29 H 1.09005 * 109.47281 * 176.04327 * 13 12 2 30 30 H 1.09000 * 109.23972 * 69.74746 * 16 14 12 31 31 H 1.08995 * 109.21336 * 310.32106 * 16 14 12 32 32 H 1.09004 * 109.38469 * 169.85800 * 17 16 14 33 33 H 1.09003 * 109.38279 * 50.17778 * 17 16 14 34 34 H 1.08996 * 109.55285 * 303.79369 * 18 17 16 35 35 H 1.08998 * 109.63149 * 183.54878 * 18 17 16 36 36 H 1.08991 * 109.55177 * 56.39233 * 22 14 12 37 37 H 1.09007 * 109.54592 * 296.10140 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2857 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1856 -4.8160 12 7 2.0197 -0.6926 1.1995 13 6 1.5284 -2.0761 1.2460 14 6 1.6488 0.0391 2.4181 15 1 0.5630 0.1135 2.4790 16 6 2.1748 -0.7104 3.6386 17 6 1.6007 -0.1180 4.9223 18 6 2.1978 1.2689 5.1712 19 16 1.6968 2.3791 3.8233 20 8 0.2781 2.4557 3.8009 21 8 2.4581 3.5756 3.9130 22 6 2.2522 1.4446 2.3677 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7083 1.1610 -3.4844 27 1 0.4420 -2.0732 1.3347 28 1 1.8168 -2.5950 0.3318 29 1 1.9618 -2.5869 2.1058 30 1 3.2620 -0.6370 3.6641 31 1 1.8871 -1.7593 3.5670 32 1 1.8408 -0.7712 5.7613 33 1 0.5178 -0.0343 4.8294 34 1 3.2851 1.1980 5.2003 35 1 1.8323 1.6599 6.1207 36 1 1.9212 1.9513 1.4612 37 1 3.3400 1.3748 2.3718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:44 Heat of formation + Delta-G solvation = -61.407967 kcal Electronic energy + Delta-G solvation = -19105.947088 eV Core-core repulsion = 16203.958946 eV Total energy + Delta-G solvation = -2901.988142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.67485 -36.82894 -35.86867 -35.29560 -32.72479 -30.66854 -29.11832 -27.14876 -25.30403 -24.75993 -22.98056 -20.79035 -18.97906 -18.67667 -16.94427 -16.27470 -16.09246 -15.52174 -15.27071 -14.95011 -14.24841 -14.20085 -13.51605 -13.29173 -13.20456 -12.72054 -12.27338 -12.00197 -11.87051 -11.76286 -11.67451 -11.50626 -11.26143 -11.21337 -10.85235 -10.76102 -10.66210 -10.42027 -10.32046 -10.21813 -10.05943 -9.60472 -8.91113 -8.42744 -7.28077 -6.06152 -4.10332 0.17333 2.80390 3.26765 3.35093 3.38548 3.78145 4.02065 4.34640 4.51801 4.62610 4.82892 4.86228 4.95779 5.13508 5.27526 5.41784 5.49568 5.57789 5.78578 5.86729 5.89999 6.09143 6.22369 6.25381 6.38473 6.61581 6.79614 6.83841 7.05404 7.38612 7.66342 7.75955 8.02153 8.29402 8.49366 8.95299 9.54928 11.00994 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.006173 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.139251 B = 4534.660261 C = 4968.083212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.205 3.795 3 H 0.044 0.956 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.523 5.523 13 C 0.028 3.972 14 C 0.093 3.907 15 H 0.057 0.943 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.606 4.606 19 S 2.411 3.589 20 O -0.940 6.940 21 O -0.951 6.951 22 C -0.588 4.588 23 H 0.012 0.988 24 H 0.090 0.910 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -2.397 13.968 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 H 0.062 0.938 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.247 5.247 13 C -0.121 4.121 14 C -0.017 4.017 15 H 0.075 0.925 16 C -0.178 4.178 17 C -0.146 4.146 18 C -0.734 4.734 19 S 2.593 3.407 20 O -0.937 6.937 21 O -0.948 6.948 22 C -0.719 4.719 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.029 -1.446 13.858 14.080 hybrid contribution -0.151 -1.010 -0.930 1.381 sum 1.878 -2.456 12.928 13.293 Atomic orbital electron populations 1.22456 1.00723 0.99674 1.00969 1.19418 0.89898 0.94902 0.85910 0.93790 1.21129 1.30747 1.12588 0.89572 0.91790 1.24937 0.95182 0.95124 0.99070 1.69887 1.36850 1.23001 1.23456 0.86459 0.78526 0.79624 0.82884 1.19777 1.21158 1.21056 1.62452 1.59291 1.01795 1.01207 1.22354 0.97162 0.90828 1.01731 1.21192 0.97570 0.90035 0.92911 0.92509 1.21914 1.02105 1.01696 0.92067 1.21258 1.01131 0.92854 0.99319 1.30241 1.11686 1.12462 1.19047 1.08173 0.76006 0.76996 0.79482 1.93575 1.27786 1.86476 1.85883 1.93571 1.73179 1.42030 1.85986 1.30369 1.12483 1.09426 1.19586 0.96878 0.89163 0.94901 0.92938 0.96195 0.90344 0.93307 0.90240 0.89348 0.89798 0.90023 0.85018 0.85409 0.83689 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 8.27 37.16 0.31 -3.92 16 2 C 0.20 4.87 2.08 -68.86 -0.14 4.73 16 3 H 0.04 1.13 5.95 -51.93 -0.31 0.82 16 4 C -0.50 -13.19 7.88 -34.44 -0.27 -13.46 16 5 H 0.06 1.68 6.77 -52.49 -0.36 1.32 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.52 -10.21 4.61 -228.52 -1.05 -11.27 16 13 C 0.03 0.49 8.36 60.06 0.50 0.99 16 14 C 0.09 1.48 1.49 -67.90 -0.10 1.38 16 15 H 0.06 0.97 6.31 -51.93 -0.33 0.64 16 16 C -0.14 -1.65 4.87 -27.15 -0.13 -1.78 16 17 C -0.11 -1.03 5.73 -26.92 -0.15 -1.19 16 18 C -0.61 -5.64 6.35 37.17 0.24 -5.41 16 19 S 2.41 32.79 5.31 -107.50 -0.57 32.22 16 20 O -0.94 -16.02 17.94 -57.81 -1.04 -17.06 16 21 O -0.95 -15.69 18.10 -57.81 -1.05 -16.74 16 22 C -0.59 -8.86 5.48 37.18 0.20 -8.65 16 23 H 0.01 0.27 6.52 -51.93 -0.34 -0.07 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.03 0.74 6.48 -51.93 -0.34 0.41 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.02 0.35 6.51 -51.93 -0.34 0.01 16 28 H 0.08 1.53 6.41 -51.93 -0.33 1.19 16 29 H 0.05 0.71 6.01 -51.93 -0.31 0.39 16 30 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.09 1.00 5.76 -51.93 -0.30 0.70 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 34 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.15 2.51 6.09 -51.93 -0.32 2.20 16 37 H 0.14 1.81 8.14 -51.92 -0.42 1.39 16 LS Contribution 289.82 15.07 4.37 4.37 Total: -1.00 -32.64 289.82 -8.62 -41.27 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.24 Total: 1.49 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 0.35 Total: -25.84 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.43 Total: -35.59 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -2.08 Total: -33.80 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 32.79 SS G_CDS: -0.57 Total: 32.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.64 -8.62 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.141 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds