Wall clock time and date at job start Mon Mar 30 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46913 * 2 1 4 4 C 1.50700 * 109.46953 * 239.99916 * 2 1 3 5 5 H 1.08001 * 120.00183 * 240.00059 * 4 2 1 6 6 C 1.37875 * 119.99758 * 60.00463 * 4 2 1 7 7 N 1.31510 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99653 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47258 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47127 * 120.00099 * 8 6 4 11 11 H 1.48505 * 109.46581 * 239.99390 * 8 6 4 12 12 N 1.46904 * 109.46870 * 120.00302 * 2 1 3 13 13 C 1.46889 * 111.00271 * 58.95252 * 12 2 1 14 14 C 1.46902 * 110.99806 * 294.99599 * 12 2 1 15 15 H 1.09003 * 109.38537 * 60.21629 * 14 12 2 16 16 C 1.52586 * 109.38239 * 180.02562 * 14 12 2 17 17 C 1.52592 * 110.64089 * 190.03914 * 16 14 12 18 18 C 1.53031 * 109.98835 * 290.01523 * 17 16 14 19 19 S 1.81669 * 108.99897 * 63.65024 * 18 17 16 20 20 O 1.42099 * 108.66329 * 60.02740 * 19 18 17 21 21 O 1.42101 * 108.66667 * 191.37258 * 19 18 17 22 22 C 1.53039 * 109.30166 * 300.47808 * 14 12 2 23 23 H 1.08998 * 109.46703 * 299.99621 * 1 2 3 24 24 H 1.08997 * 109.47031 * 59.99998 * 1 2 3 25 25 H 1.08997 * 109.46913 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00237 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47852 * 296.04757 * 13 12 2 28 28 H 1.09001 * 109.47251 * 56.04790 * 13 12 2 29 29 H 1.09005 * 109.47281 * 176.04327 * 13 12 2 30 30 H 1.09000 * 109.23972 * 69.74746 * 16 14 12 31 31 H 1.08995 * 109.21336 * 310.32106 * 16 14 12 32 32 H 1.09004 * 109.38469 * 169.85800 * 17 16 14 33 33 H 1.09003 * 109.38279 * 50.17778 * 17 16 14 34 34 H 1.08996 * 109.55285 * 303.79369 * 18 17 16 35 35 H 1.08998 * 109.63149 * 183.54878 * 18 17 16 36 36 H 1.08991 * 109.55177 * 56.39233 * 22 14 12 37 37 H 1.09007 * 109.54592 * 296.10140 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2857 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1856 -4.8160 12 7 2.0197 -0.6926 1.1995 13 6 1.5284 -2.0761 1.2460 14 6 1.6488 0.0391 2.4181 15 1 0.5630 0.1135 2.4790 16 6 2.1748 -0.7104 3.6386 17 6 1.6007 -0.1180 4.9223 18 6 2.1978 1.2689 5.1712 19 16 1.6968 2.3791 3.8233 20 8 0.2781 2.4557 3.8009 21 8 2.4581 3.5756 3.9130 22 6 2.2522 1.4446 2.3677 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7083 1.1610 -3.4844 27 1 0.4420 -2.0732 1.3347 28 1 1.8168 -2.5950 0.3318 29 1 1.9618 -2.5869 2.1058 30 1 3.2620 -0.6370 3.6641 31 1 1.8871 -1.7593 3.5670 32 1 1.8408 -0.7712 5.7613 33 1 0.5178 -0.0343 4.8294 34 1 3.2851 1.1980 5.2003 35 1 1.8323 1.6599 6.1207 36 1 1.9212 1.9513 1.4612 37 1 3.3400 1.3748 2.3718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:43 Heat of formation + Delta-G solvation = -87.057770 kcal Electronic energy + Delta-G solvation = -19107.059347 eV Core-core repulsion = 16203.958946 eV Total energy + Delta-G solvation = -2903.100401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03336 -38.05730 -37.07640 -36.56913 -34.49992 -31.94884 -30.75895 -28.26121 -27.32754 -26.22312 -24.17848 -22.06388 -20.48201 -19.78939 -18.45965 -17.73620 -17.33617 -16.95157 -16.66446 -16.18703 -15.77712 -15.49318 -14.83025 -14.65417 -14.47936 -13.90308 -13.71195 -13.39799 -13.22236 -13.09740 -13.06985 -12.99013 -12.85851 -12.61637 -12.35579 -12.33088 -12.12870 -11.93607 -11.70271 -11.67387 -11.41503 -10.92042 -10.84770 -10.47148 -8.86319 -8.11681 -6.22344 -0.89343 1.40557 1.42800 1.53958 1.76276 2.41900 2.73096 2.98672 3.18025 3.35939 3.69345 3.75583 3.85631 3.93695 4.14121 4.44630 4.51466 4.61817 4.71708 4.73315 4.82223 4.85938 4.88199 4.95829 5.09754 5.13036 5.18188 5.32142 5.43288 5.55876 5.70403 5.79185 6.19930 6.46371 6.73015 6.92794 7.47111 8.94824 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.006173 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.139251 B = 4534.660261 C = 4968.083212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.207 3.793 3 H 0.017 0.983 4 C -0.512 4.512 5 H 0.062 0.938 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.529 5.529 13 C 0.028 3.972 14 C 0.087 3.913 15 H 0.040 0.960 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.569 4.569 19 S 2.413 3.587 20 O -0.983 6.983 21 O -0.986 6.986 22 C -0.598 4.598 23 H 0.022 0.978 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -4.300 16.596 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.100 3.900 3 H 0.034 0.966 4 C -0.550 4.550 5 H 0.080 0.920 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.253 5.253 13 C -0.120 4.120 14 C -0.023 4.023 15 H 0.058 0.942 16 C -0.174 4.174 17 C -0.146 4.146 18 C -0.703 4.703 19 S 2.601 3.399 20 O -0.981 6.981 21 O -0.983 6.983 22 C -0.728 4.728 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.126 0.874 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.399 -3.335 16.447 17.122 hybrid contribution -0.568 -0.443 -1.642 1.793 sum 2.831 -3.777 14.805 15.540 Atomic orbital electron populations 1.22278 1.01064 0.99359 0.99857 1.19154 0.89491 0.93809 0.87547 0.96562 1.21458 1.30348 1.12444 0.90769 0.91963 1.25727 0.95494 0.95829 1.02020 1.70032 1.38086 1.24408 1.23894 0.85481 0.77970 0.78667 0.79333 1.18846 1.20942 1.21027 1.62335 1.59262 1.02564 1.01141 1.22396 0.97138 0.89930 1.02523 1.21410 0.97017 0.90620 0.93248 0.94233 1.21936 1.03224 1.01539 0.90661 1.21360 1.00745 0.93184 0.99349 1.29993 1.13957 1.10104 1.16209 1.07910 0.74685 0.77255 0.80087 1.93514 1.30412 1.87415 1.86722 1.93518 1.73363 1.44859 1.86567 1.30425 1.13526 1.09121 1.19678 0.95937 0.92246 0.94608 0.93096 0.96662 0.92508 0.89099 0.88360 0.88388 0.85607 0.90625 0.81537 0.82197 0.87421 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -8.20 8.27 71.98 0.60 -7.60 16 2 C 0.21 10.23 2.08 44.17 0.09 10.32 16 3 H 0.02 0.90 5.95 -2.39 -0.01 0.89 16 4 C -0.51 -27.51 7.88 25.60 0.20 -27.31 16 5 H 0.06 3.30 6.77 -2.91 -0.02 3.28 16 6 C 0.01 0.41 5.30 84.65 0.45 0.86 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.36 16 8 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 N -0.53 -20.53 4.61 -876.91 -4.04 -24.57 16 13 C 0.03 0.96 8.36 127.69 1.07 2.03 16 14 C 0.09 2.69 1.49 44.79 0.07 2.76 16 15 H 0.04 1.36 6.31 -2.39 -0.02 1.34 16 16 C -0.14 -2.65 4.87 30.32 0.15 -2.50 16 17 C -0.11 -1.51 5.73 30.47 0.17 -1.34 16 18 C -0.57 -7.74 6.35 71.99 0.46 -7.28 16 19 S 2.41 63.92 5.31 -56.49 -0.30 63.62 16 20 O -0.98 -34.02 17.94 -127.40 -2.29 -36.31 16 21 O -0.99 -32.41 18.10 -127.40 -2.31 -34.71 16 22 C -0.60 -18.27 5.48 72.00 0.39 -17.88 16 23 H 0.02 1.01 6.52 -2.39 -0.02 1.00 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 25 H 0.03 1.68 6.48 -2.39 -0.02 1.66 16 26 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 27 H 0.01 0.52 6.51 -2.39 -0.02 0.51 16 28 H 0.06 2.18 6.41 -2.39 -0.02 2.16 16 29 H 0.09 2.33 6.01 -2.38 -0.01 2.32 16 30 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 31 H 0.10 1.74 5.76 -2.39 -0.01 1.73 16 32 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.23 8.01 -2.39 -0.02 1.21 16 34 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 4.08 6.09 -2.39 -0.01 4.07 16 37 H 0.15 3.99 8.14 -2.38 -0.02 3.97 16 Total: -1.00 -74.37 289.82 -1.95 -76.32 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.07 Total: 11.40 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 3.65 Total: -47.95 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.80 Total: -77.93 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -4.59 Total: -71.02 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 63.92 SS G_CDS: -0.30 Total: 63.62 kcal Total: -74.37 -1.95 -76.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.737 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds