Wall clock time and date at job start Mon Mar 30 2020 04:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.36132 * 2 1 4 4 C 1.54163 * 110.31832 * 237.83234 * 2 1 3 5 5 H 1.09002 * 109.64666 * 149.15535 * 4 2 1 6 6 N 1.46896 * 109.53804 * 28.79465 * 4 2 1 7 7 C 1.46904 * 111.00268 * 154.65927 * 6 4 2 8 8 C 1.53003 * 109.47252 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.46867 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46773 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00391 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99984 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99920 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46784 * 60.00167 * 14 12 10 16 16 H 1.48495 * 109.46876 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47062 * 300.00439 * 14 12 10 18 18 C 1.53878 * 108.70459 * 269.00542 * 4 2 1 19 19 C 1.55046 * 106.62439 * 312.82210 * 18 4 2 20 20 S 1.82912 * 110.31876 * 122.16959 * 2 1 3 21 21 O 1.42105 * 109.35385 * 3.38143 * 20 2 1 22 22 O 1.42103 * 109.47782 * 230.21220 * 20 2 1 23 23 H 1.08997 * 109.47118 * 182.16651 * 1 2 3 24 24 H 1.09006 * 109.46807 * 302.17048 * 1 2 3 25 25 H 1.08999 * 109.46878 * 62.16592 * 1 2 3 26 26 H 1.00901 * 111.00265 * 278.61527 * 6 4 2 27 27 H 1.09001 * 109.47149 * 300.00352 * 7 6 4 28 28 H 1.09002 * 109.46370 * 60.00131 * 7 6 4 29 29 H 1.09004 * 109.47039 * 299.99873 * 8 7 6 30 30 H 1.08994 * 109.46903 * 59.99973 * 8 7 6 31 31 H 1.09001 * 109.47111 * 300.00140 * 9 8 7 32 32 H 1.09002 * 109.47125 * 59.99723 * 9 8 7 33 33 H 0.97001 * 120.00110 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.02320 * 72.11047 * 18 4 2 35 35 H 1.08997 * 110.02770 * 193.47377 * 18 4 2 36 36 H 1.08998 * 110.78854 * 160.70737 * 19 18 4 37 37 H 1.09004 * 110.78736 * 284.16619 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0653 -0.7697 -1.2238 5 1 3.0191 -0.3442 -1.5359 6 7 1.0982 -0.6748 -2.3254 7 6 1.7630 -0.8381 -3.6252 8 6 0.7258 -0.7341 -4.7452 9 6 1.4181 -0.9049 -6.0989 10 6 0.3966 -0.8018 -7.2020 11 1 -0.6424 -0.6319 -6.9616 12 6 0.7887 -0.9243 -8.5182 13 7 2.0540 -1.1317 -8.8108 14 14 -0.4776 -0.7972 -9.8856 15 1 -1.1349 0.5333 -9.8294 16 1 0.1944 -0.9628 -11.1994 17 1 -1.4990 -1.8615 -9.7149 18 6 2.2604 -2.2450 -0.8322 19 6 3.0115 -2.2483 0.5242 20 16 2.1652 -0.9133 1.4520 21 8 1.0736 -1.4628 2.1771 22 8 3.1337 -0.1199 2.1242 23 1 -0.3633 -1.0269 0.0388 24 1 -0.3633 0.5472 0.8700 25 1 -0.3633 0.4798 -0.9088 26 1 0.3545 -1.3473 -2.2126 27 1 2.5131 -0.0572 -3.7503 28 1 2.2450 -1.8149 -3.6664 29 1 -0.0240 -1.5154 -4.6198 30 1 0.2434 0.2424 -4.7040 31 1 2.1681 -0.1239 -6.2245 32 1 1.9003 -1.8816 -6.1397 33 1 2.3298 -1.2183 -9.7368 34 1 1.2921 -2.7336 -0.7239 35 1 2.8538 -2.7569 -1.5897 36 1 2.8925 -3.2065 1.0299 37 1 4.0663 -2.0125 0.3829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308911166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:44 Heat of formation + Delta-G solvation = -85.936118 kcal Electronic energy + Delta-G solvation = -17792.675820 eV Core-core repulsion = 14889.624058 eV Total energy + Delta-G solvation = -2903.051763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.62251 -37.23160 -36.21783 -34.85411 -32.88846 -32.19079 -30.57875 -26.81876 -25.38547 -24.03829 -22.62539 -20.85370 -20.16528 -18.90052 -17.32184 -16.70503 -16.30972 -16.08110 -15.30370 -15.01777 -14.69607 -14.42428 -14.06944 -13.55966 -13.30656 -13.20224 -12.52578 -12.41827 -12.28115 -12.22745 -12.13782 -11.88759 -11.52469 -11.44030 -11.28929 -10.89961 -10.86488 -10.67260 -10.60184 -10.25130 -9.78782 -9.40245 -9.12668 -8.42561 -8.38109 -6.03791 -4.06230 -0.18679 2.28185 3.30997 3.34139 3.35503 3.37957 3.69942 4.06248 4.09080 4.28971 4.42379 4.47585 4.56566 4.66389 5.01640 5.19061 5.28581 5.32189 5.41379 5.47395 5.57023 5.65951 5.71549 5.82574 6.15343 6.18775 6.59269 6.62225 7.03902 7.11135 7.37809 7.62330 7.76251 7.95777 8.38680 9.00698 9.58137 11.07560 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.054429 B = 0.003362 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.309717 B = 8327.049557 C = 8545.541647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.536 4.536 3 H 0.144 0.856 4 C 0.095 3.905 5 H 0.100 0.900 6 N -0.671 5.671 7 C 0.054 3.946 8 C -0.108 4.108 9 C 0.022 3.978 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.152 4.152 19 C -0.586 4.586 20 S 2.378 3.622 21 O -0.935 6.935 22 O -0.944 6.944 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.344 0.656 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -1.361 18.793 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.648 4.648 3 H 0.162 0.838 4 C -0.018 4.018 5 H 0.118 0.882 6 N -0.302 5.302 7 C -0.074 4.074 8 C -0.146 4.146 9 C -0.015 4.015 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.192 4.192 19 C -0.716 4.716 20 S 2.562 3.438 21 O -0.932 6.932 22 O -0.941 6.941 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.163 0.837 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.151 -0.518 19.591 19.632 hybrid contribution -0.184 -1.104 -1.699 2.034 sum 0.967 -1.622 17.892 17.992 Atomic orbital electron populations 1.21378 0.89052 1.03477 1.04294 1.30317 1.07685 1.12237 1.14534 0.83808 1.21967 0.97131 0.91527 0.91137 0.88220 1.60685 1.11618 1.56636 1.01222 1.22265 0.97929 0.99535 0.87670 1.21635 0.96997 1.01025 0.94928 1.19057 0.95826 0.96980 0.89655 1.21206 0.94368 1.49241 0.91139 0.92706 1.25027 0.95236 0.95277 0.98914 1.69949 1.15219 1.49627 1.18790 0.86649 0.81503 0.78668 0.81131 1.20192 1.21298 1.20254 1.23039 1.01655 0.98918 0.95631 1.30546 1.12216 1.18569 1.10291 1.09515 0.76720 0.78814 0.78747 1.93601 1.52621 1.77995 1.68951 1.93601 1.60861 1.67888 1.71755 0.91554 0.92062 0.88489 0.83691 0.91123 0.95298 0.93536 0.92419 0.96575 0.96821 0.92936 0.89317 0.88239 0.84663 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 7.79 37.16 0.29 -0.81 16 2 C -0.54 -4.56 3.76 -26.12 -0.10 -4.66 16 3 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.09 0.87 2.72 -66.65 -0.18 0.69 16 5 H 0.10 0.87 7.80 -51.93 -0.40 0.47 16 6 N -0.67 -7.80 4.79 -105.60 -0.51 -8.30 16 7 C 0.05 0.80 5.49 -3.82 -0.02 0.78 16 8 C -0.11 -2.06 5.41 -26.73 -0.14 -2.20 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.15 -1.16 5.80 -25.19 -0.15 -1.31 16 19 C -0.59 -3.90 7.31 38.24 0.28 -3.62 16 20 S 2.38 21.59 5.96 -107.50 -0.64 20.95 16 21 O -0.93 -11.27 17.17 -57.73 -0.99 -12.26 16 22 O -0.94 -11.81 18.15 -57.73 -1.05 -12.86 16 23 H 0.07 0.55 8.00 -51.93 -0.42 0.14 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.93 7.30 -51.93 -0.38 0.55 16 26 H 0.34 3.65 7.87 -39.29 -0.31 3.34 16 27 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 28 H 0.03 0.42 7.92 -51.93 -0.41 0.01 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.09 0.61 7.92 -51.93 -0.41 0.20 16 35 H 0.10 0.77 7.99 -51.93 -0.42 0.35 16 36 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -34.22 312.07 -9.43 -43.65 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.09 Total: -2.39 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -0.57 Total: -24.00 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.23 Total: -34.14 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -2.04 Total: -25.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 21.59 SS G_CDS: -0.64 Total: 20.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.22 -9.43 -43.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308911166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.289 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds