Wall clock time and date at job start Mon Mar 30 2020 04:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.36132 * 2 1 4 4 C 1.54163 * 110.31832 * 237.83234 * 2 1 3 5 5 H 1.09002 * 109.64666 * 149.15535 * 4 2 1 6 6 N 1.46896 * 109.53804 * 28.79465 * 4 2 1 7 7 C 1.46904 * 111.00268 * 154.65927 * 6 4 2 8 8 C 1.53003 * 109.47252 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.46867 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46773 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00391 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99984 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99920 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46784 * 60.00167 * 14 12 10 16 16 H 1.48495 * 109.46876 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47062 * 300.00439 * 14 12 10 18 18 C 1.53878 * 108.70459 * 269.00542 * 4 2 1 19 19 C 1.55046 * 106.62439 * 312.82210 * 18 4 2 20 20 S 1.82912 * 110.31876 * 122.16959 * 2 1 3 21 21 O 1.42105 * 109.35385 * 3.38143 * 20 2 1 22 22 O 1.42103 * 109.47782 * 230.21220 * 20 2 1 23 23 H 1.08997 * 109.47118 * 182.16651 * 1 2 3 24 24 H 1.09006 * 109.46807 * 302.17048 * 1 2 3 25 25 H 1.08999 * 109.46878 * 62.16592 * 1 2 3 26 26 H 1.00901 * 111.00265 * 278.61527 * 6 4 2 27 27 H 1.09001 * 109.47149 * 300.00352 * 7 6 4 28 28 H 1.09002 * 109.46370 * 60.00131 * 7 6 4 29 29 H 1.09004 * 109.47039 * 299.99873 * 8 7 6 30 30 H 1.08994 * 109.46903 * 59.99973 * 8 7 6 31 31 H 1.09001 * 109.47111 * 300.00140 * 9 8 7 32 32 H 1.09002 * 109.47125 * 59.99723 * 9 8 7 33 33 H 0.97001 * 120.00110 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.02320 * 72.11047 * 18 4 2 35 35 H 1.08997 * 110.02770 * 193.47377 * 18 4 2 36 36 H 1.08998 * 110.78854 * 160.70737 * 19 18 4 37 37 H 1.09004 * 110.78736 * 284.16619 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0653 -0.7697 -1.2238 5 1 3.0191 -0.3442 -1.5359 6 7 1.0982 -0.6748 -2.3254 7 6 1.7630 -0.8381 -3.6252 8 6 0.7258 -0.7341 -4.7452 9 6 1.4181 -0.9049 -6.0989 10 6 0.3966 -0.8018 -7.2020 11 1 -0.6424 -0.6319 -6.9616 12 6 0.7887 -0.9243 -8.5182 13 7 2.0540 -1.1317 -8.8108 14 14 -0.4776 -0.7972 -9.8856 15 1 -1.1349 0.5333 -9.8294 16 1 0.1944 -0.9628 -11.1994 17 1 -1.4990 -1.8615 -9.7149 18 6 2.2604 -2.2450 -0.8322 19 6 3.0115 -2.2483 0.5242 20 16 2.1652 -0.9133 1.4520 21 8 1.0736 -1.4628 2.1771 22 8 3.1337 -0.1199 2.1242 23 1 -0.3633 -1.0269 0.0388 24 1 -0.3633 0.5472 0.8700 25 1 -0.3633 0.4798 -0.9088 26 1 0.3545 -1.3473 -2.2126 27 1 2.5131 -0.0572 -3.7503 28 1 2.2450 -1.8149 -3.6664 29 1 -0.0240 -1.5154 -4.6198 30 1 0.2434 0.2424 -4.7040 31 1 2.1681 -0.1239 -6.2245 32 1 1.9003 -1.8816 -6.1397 33 1 2.3298 -1.2183 -9.7368 34 1 1.2921 -2.7336 -0.7239 35 1 2.8538 -2.7569 -1.5897 36 1 2.8925 -3.2065 1.0299 37 1 4.0663 -2.0125 0.3829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308911166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:44 Heat of formation + Delta-G solvation = -111.167197 kcal Electronic energy + Delta-G solvation = -17793.769922 eV Core-core repulsion = 14889.624058 eV Total energy + Delta-G solvation = -2904.145864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.44768 -38.07101 -37.05615 -36.34116 -34.59518 -32.87575 -32.11010 -28.25514 -26.49469 -24.80067 -24.14992 -22.00594 -21.40431 -19.64651 -18.52679 -17.98760 -17.35859 -16.93457 -16.55774 -16.31868 -15.88755 -15.64381 -14.88496 -14.60049 -14.25857 -14.15120 -13.92852 -13.64530 -13.31349 -13.16545 -13.13330 -12.98285 -12.83613 -12.67511 -12.44512 -12.38266 -12.11358 -11.95843 -11.63962 -11.48913 -11.36451 -11.17123 -10.87155 -10.53099 -9.36663 -8.19081 -6.29492 -0.89590 1.41321 1.43667 1.51596 1.59973 2.41921 2.64412 2.96940 3.14483 3.24874 3.40812 3.62304 3.77346 3.92361 4.02379 4.28948 4.37417 4.41902 4.56478 4.74354 4.76186 4.82843 4.84222 4.92020 5.05713 5.11614 5.16681 5.28432 5.43906 5.54660 5.79234 5.89002 6.02933 6.29005 6.46772 6.88102 7.39855 8.92368 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.054429 B = 0.003362 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.309717 B = 8327.049557 C = 8545.541647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.529 4.529 3 H 0.152 0.848 4 C 0.091 3.909 5 H 0.106 0.894 6 N -0.673 5.673 7 C 0.068 3.932 8 C -0.095 4.095 9 C 0.024 3.976 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.267 1.267 18 C -0.154 4.154 19 C -0.564 4.564 20 S 2.386 3.614 21 O -0.968 6.968 22 O -0.982 6.982 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.351 0.649 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.051 0.949 31 H -0.009 1.009 32 H -0.007 1.007 33 H 0.263 0.737 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.155 0.845 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -1.969 19.006 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.640 4.640 3 H 0.170 0.830 4 C -0.021 4.021 5 H 0.124 0.876 6 N -0.304 5.304 7 C -0.061 4.061 8 C -0.133 4.133 9 C -0.013 4.013 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.787 3.213 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.194 4.194 19 C -0.696 4.696 20 S 2.574 3.426 21 O -0.965 6.965 22 O -0.979 6.979 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.171 0.829 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.009 0.991 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.173 0.827 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.597 -1.108 19.850 19.890 hybrid contribution 0.002 -0.929 -1.772 2.001 sum 0.599 -2.037 18.078 18.202 Atomic orbital electron populations 1.21427 0.89303 1.03910 1.04137 1.30227 1.07462 1.12650 1.13703 0.83049 1.22071 0.96798 0.92923 0.90311 0.87552 1.60545 1.12186 1.57222 1.00400 1.21936 0.96451 0.99743 0.87971 1.21381 0.97630 1.00789 0.93467 1.18975 0.95045 0.94803 0.92517 1.21702 0.95164 1.48956 0.92366 0.92303 1.25952 0.97287 0.94834 1.01703 1.70078 1.17250 1.50624 1.19416 0.85548 0.78934 0.79130 0.77727 1.19309 1.20940 1.19154 1.23058 1.02571 0.97660 0.96103 1.30420 1.12661 1.17719 1.08815 1.09119 0.75872 0.78956 0.78685 1.93554 1.53942 1.78515 1.70467 1.93550 1.61643 1.69453 1.73301 0.90965 0.91712 0.89138 0.82855 0.91645 0.94678 0.92934 0.93029 0.99082 0.98863 0.92823 0.88327 0.87596 0.82667 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.79 71.98 0.56 -1.58 16 2 C -0.53 -8.16 3.76 30.99 0.12 -8.04 16 3 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.09 1.46 2.72 45.61 0.12 1.58 16 5 H 0.11 1.60 7.80 -2.39 -0.02 1.58 16 6 N -0.67 -14.34 4.79 -487.99 -2.34 -16.67 16 7 C 0.07 1.93 5.49 86.30 0.47 2.40 16 8 C -0.09 -3.56 5.41 30.60 0.17 -3.40 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 11 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 14 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 C -0.15 -1.88 5.80 31.59 0.18 -1.70 16 19 C -0.56 -5.77 7.31 72.68 0.53 -5.24 16 20 S 2.39 40.12 5.96 -56.49 -0.34 39.79 16 21 O -0.97 -22.45 17.17 -127.47 -2.19 -24.64 16 22 O -0.98 -23.92 18.15 -127.47 -2.31 -26.24 16 23 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 24 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.09 1.63 7.30 -2.39 -0.02 1.61 16 26 H 0.35 6.68 7.87 -89.69 -0.71 5.97 16 27 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 28 H 0.03 0.96 7.92 -2.39 -0.02 0.94 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.10 1.05 7.92 -2.39 -0.02 1.03 16 35 H 0.11 1.27 7.99 -2.39 -0.02 1.25 16 36 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.16 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -73.51 312.07 -1.53 -75.04 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.34 Total: 7.04 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 3.00 Total: -44.25 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -2.05 Total: -72.34 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -4.50 Total: -50.87 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 40.12 SS G_CDS: -0.34 Total: 39.79 kcal Total: -73.51 -1.53 -75.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308911166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.125 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds