Wall clock time and date at job start Mon Mar 30 2020 04:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52455 * 2 1 4 4 C 1.53041 * 109.50046 * 239.92010 * 2 1 3 5 5 C 1.53036 * 109.53918 * 178.68399 * 4 2 1 6 6 H 1.09006 * 109.49497 * 181.31523 * 5 4 2 7 7 C 1.52998 * 109.49692 * 301.41151 * 5 4 2 8 8 C 1.53184 * 109.31367 * 61.36589 * 5 4 2 9 9 N 1.46933 * 108.77512 * 305.36273 * 8 5 4 10 10 S 1.65596 * 120.63195 * 233.58602 * 9 8 5 11 11 O 1.42104 * 104.27948 * 333.92796 * 10 9 8 12 12 O 1.42098 * 104.27952 * 206.07210 * 10 9 8 13 13 C 1.81397 * 104.44776 * 89.99899 * 10 9 8 14 14 C 1.50706 * 109.47319 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.46925 * 118.73558 * 53.86038 * 9 8 5 23 23 H 1.09002 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47173 * 300.08256 * 1 2 3 25 25 H 1.09003 * 109.46875 * 60.08351 * 1 2 3 26 26 H 1.08995 * 109.46102 * 58.65924 * 4 2 1 27 27 H 1.09006 * 109.44726 * 298.69622 * 4 2 1 28 28 H 1.09004 * 109.47057 * 179.84482 * 7 5 4 29 29 H 1.08999 * 109.46963 * 299.83937 * 7 5 4 30 30 H 1.08994 * 109.47193 * 59.84198 * 7 5 4 31 31 H 1.08999 * 109.58935 * 185.57549 * 8 5 4 32 32 H 1.09000 * 109.59431 * 65.14941 * 8 5 4 33 33 H 1.09001 * 109.47514 * 60.00274 * 13 10 9 34 34 H 1.09006 * 109.47482 * 299.99976 * 13 10 9 35 35 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 36 36 H 1.09003 * 109.58348 * 65.92928 * 22 9 8 37 37 H 1.09003 * 109.58255 * 186.34971 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2659 6 1 3.9334 -1.1897 -2.1671 7 6 4.0552 0.7562 -1.2492 8 6 4.1053 -1.4266 -0.0308 9 7 3.5046 -0.8291 1.1696 10 16 4.4586 -0.2851 2.4090 11 8 5.6449 -1.0604 2.3044 12 8 3.6255 -0.3722 3.5568 13 6 4.7930 1.4491 1.9952 14 6 5.6629 2.0615 3.0626 15 1 5.9830 1.4668 3.9054 16 6 6.0502 3.3810 2.9633 17 7 5.6600 4.1054 1.9373 18 14 7.1279 4.1402 4.2867 19 1 7.4017 5.5599 3.9480 20 1 6.4293 4.0689 5.5952 21 1 8.4100 3.3953 4.3688 22 6 2.0411 -0.7289 1.2520 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5151 0.8892 25 1 -0.3633 0.5126 -0.8908 26 1 1.6582 -0.2245 -2.1389 27 1 1.6968 -1.7573 -1.2350 28 1 5.1450 0.7757 -1.2590 29 1 3.6747 1.2764 -2.1283 30 1 3.6910 1.2504 -0.3486 31 1 5.1896 -1.3246 0.0138 32 1 3.8376 -2.4818 -0.0867 33 1 3.8522 1.9964 1.9356 34 1 5.3052 1.5012 1.0344 35 1 5.1001 3.7112 1.2503 36 1 1.6085 -1.7283 1.2985 37 1 1.7630 -0.1662 2.1432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335911772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:27 Heat of formation + Delta-G solvation = -100.814672 kcal Electronic energy + Delta-G solvation = -19268.080229 eV Core-core repulsion = 16364.383284 eV Total energy + Delta-G solvation = -2903.696945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.08387 -36.31558 -35.09887 -33.71625 -33.31188 -32.85442 -28.61601 -26.88356 -26.62592 -24.35705 -23.24973 -21.55660 -19.21327 -18.14866 -17.33931 -17.01549 -15.67603 -15.30085 -14.91782 -14.59370 -14.20089 -13.98515 -13.81817 -13.56453 -12.89019 -12.78734 -12.33046 -12.16828 -12.06868 -11.74394 -11.65432 -11.47623 -11.34878 -11.24276 -11.05362 -10.94264 -10.79947 -10.65759 -10.34103 -10.20806 -10.07104 -9.52944 -9.14313 -8.63647 -8.48634 -6.68554 -4.45172 1.18841 3.35102 3.37522 3.41721 3.56139 4.34975 4.64272 4.71102 4.75757 4.88352 4.97933 5.07958 5.22230 5.22818 5.35268 5.44749 5.60531 5.65531 5.73082 5.76999 5.83741 5.90128 6.02560 6.06038 6.08365 6.12621 6.22945 6.32025 6.38689 6.42654 6.56836 6.58805 6.99179 7.45262 8.03107 8.48842 9.30862 10.74135 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.007183 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.927865 B = 3897.281130 C = 4137.706092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 H 0.081 0.919 4 C -0.102 4.102 5 C -0.107 4.107 6 H 0.077 0.923 7 C -0.158 4.158 8 C 0.128 3.872 9 N -1.008 6.008 10 S 2.594 3.406 11 O -0.976 6.976 12 O -0.977 6.977 13 C -0.442 4.442 14 C -0.610 4.610 15 H 0.062 0.938 16 C 0.036 3.964 17 N -0.891 5.891 18 Si 1.070 2.930 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.130 3.870 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.272 0.728 36 H 0.064 0.936 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 -7.753 -7.807 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 H 0.099 0.901 4 C -0.140 4.140 5 C -0.127 4.127 6 H 0.095 0.905 7 C -0.215 4.215 8 C 0.002 3.998 9 N -0.843 5.843 10 S 2.694 3.306 11 O -0.967 6.967 12 O -0.967 6.967 13 C -0.577 4.577 14 C -0.649 4.649 15 H 0.080 0.920 16 C -0.172 4.172 17 N -0.524 5.524 18 Si 0.896 3.104 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.004 3.996 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.966 -6.944 -6.617 11.855 hybrid contribution -0.934 -0.930 -1.023 1.669 sum -7.900 -7.875 -7.640 13.520 Atomic orbital electron populations 1.21773 0.94877 1.01722 1.01906 1.21690 0.95446 1.00818 0.95449 0.90057 1.21521 0.94838 1.00296 0.97347 1.21502 0.95931 0.97220 0.98015 0.90494 1.22032 1.01342 0.95578 1.02556 1.21349 0.98251 0.96404 0.83747 1.58000 1.15582 1.76402 1.34332 1.05561 0.72974 0.78925 0.73131 1.93468 1.48115 1.69102 1.85987 1.93467 1.67724 1.87856 1.47673 1.27970 1.05929 1.16869 1.06910 1.21232 1.35632 1.00277 1.07799 0.92005 1.25945 0.97348 0.93437 1.00448 1.70804 1.32533 1.39108 1.09993 0.83533 0.75901 0.76428 0.74548 1.20238 1.20696 1.20695 1.21447 0.79465 1.00582 0.98119 0.92718 0.92370 0.92599 0.92045 0.92081 0.92435 0.92728 0.91417 0.89290 0.91811 0.90849 0.90388 0.91799 0.91769 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 37.16 0.34 -1.11 16 2 C -0.11 -1.39 2.54 -90.28 -0.23 -1.62 16 3 H 0.08 1.10 6.33 -51.93 -0.33 0.77 16 4 C -0.10 -1.12 4.71 -26.69 -0.13 -1.24 16 5 C -0.11 -1.30 3.21 -90.51 -0.29 -1.59 16 6 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.16 -2.19 8.16 37.16 0.30 -1.89 16 8 C 0.13 1.85 5.71 -3.71 -0.02 1.83 16 9 N -1.01 -16.93 2.65 -113.27 -0.30 -17.24 16 10 S 2.59 56.76 5.33 -107.50 -0.57 56.18 16 11 O -0.98 -23.54 16.73 -57.54 -0.96 -24.50 16 12 O -0.98 -23.59 16.71 -57.54 -0.96 -24.55 16 13 C -0.44 -10.59 4.23 36.01 0.15 -10.44 16 14 C -0.61 -17.12 9.13 -34.44 -0.31 -17.43 16 15 H 0.06 1.73 7.71 -52.48 -0.40 1.33 16 16 C 0.04 1.02 5.46 -17.82 -0.10 0.92 16 17 N -0.89 -25.76 13.65 55.43 0.76 -25.01 16 18 Si 1.07 24.61 29.90 -169.99 -5.08 19.53 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.13 1.88 5.63 -3.49 -0.02 1.86 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.06 4.39 -51.93 -0.23 0.83 16 31 H 0.09 1.37 7.10 -51.93 -0.37 1.00 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.72 8.01 -51.92 -0.42 1.30 16 34 H 0.08 1.82 6.96 -51.92 -0.36 1.45 16 35 H 0.27 7.65 7.22 -40.82 -0.29 7.35 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.37 7.09 -51.93 -0.37 1.00 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -32.94 300.50 -8.69 -41.63 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.79 Total: 0.14 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -0.30 Total: -30.72 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.46 Total: -42.24 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.92 Total: -49.06 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -0.57 Total: 56.18 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.94 -8.69 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335911772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.180 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds