Wall clock time and date at job start Mon Mar 30 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52455 * 2 1 4 4 C 1.53041 * 109.50046 * 239.92010 * 2 1 3 5 5 C 1.53036 * 109.53918 * 178.68399 * 4 2 1 6 6 H 1.09006 * 109.49497 * 181.31523 * 5 4 2 7 7 C 1.52998 * 109.49692 * 301.41151 * 5 4 2 8 8 C 1.53184 * 109.31367 * 61.36589 * 5 4 2 9 9 N 1.46933 * 108.77512 * 305.36273 * 8 5 4 10 10 S 1.65596 * 120.63195 * 233.58602 * 9 8 5 11 11 O 1.42104 * 104.27948 * 333.92796 * 10 9 8 12 12 O 1.42098 * 104.27952 * 206.07210 * 10 9 8 13 13 C 1.81397 * 104.44776 * 89.99899 * 10 9 8 14 14 C 1.50706 * 109.47319 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.46925 * 118.73558 * 53.86038 * 9 8 5 23 23 H 1.09002 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47173 * 300.08256 * 1 2 3 25 25 H 1.09003 * 109.46875 * 60.08351 * 1 2 3 26 26 H 1.08995 * 109.46102 * 58.65924 * 4 2 1 27 27 H 1.09006 * 109.44726 * 298.69622 * 4 2 1 28 28 H 1.09004 * 109.47057 * 179.84482 * 7 5 4 29 29 H 1.08999 * 109.46963 * 299.83937 * 7 5 4 30 30 H 1.08994 * 109.47193 * 59.84198 * 7 5 4 31 31 H 1.08999 * 109.58935 * 185.57549 * 8 5 4 32 32 H 1.09000 * 109.59431 * 65.14941 * 8 5 4 33 33 H 1.09001 * 109.47514 * 60.00274 * 13 10 9 34 34 H 1.09006 * 109.47482 * 299.99976 * 13 10 9 35 35 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 36 36 H 1.09003 * 109.58348 * 65.92928 * 22 9 8 37 37 H 1.09003 * 109.58255 * 186.34971 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2659 6 1 3.9334 -1.1897 -2.1671 7 6 4.0552 0.7562 -1.2492 8 6 4.1053 -1.4266 -0.0308 9 7 3.5046 -0.8291 1.1696 10 16 4.4586 -0.2851 2.4090 11 8 5.6449 -1.0604 2.3044 12 8 3.6255 -0.3722 3.5568 13 6 4.7930 1.4491 1.9952 14 6 5.6629 2.0615 3.0626 15 1 5.9830 1.4668 3.9054 16 6 6.0502 3.3810 2.9633 17 7 5.6600 4.1054 1.9373 18 14 7.1279 4.1402 4.2867 19 1 7.4017 5.5599 3.9480 20 1 6.4293 4.0689 5.5952 21 1 8.4100 3.3953 4.3688 22 6 2.0411 -0.7289 1.2520 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5151 0.8892 25 1 -0.3633 0.5126 -0.8908 26 1 1.6582 -0.2245 -2.1389 27 1 1.6968 -1.7573 -1.2350 28 1 5.1450 0.7757 -1.2590 29 1 3.6747 1.2764 -2.1283 30 1 3.6910 1.2504 -0.3486 31 1 5.1896 -1.3246 0.0138 32 1 3.8376 -2.4818 -0.0867 33 1 3.8522 1.9964 1.9356 34 1 5.3052 1.5012 1.0344 35 1 5.1001 3.7112 1.2503 36 1 1.6085 -1.7283 1.2985 37 1 1.7630 -0.1662 2.1432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335911772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:26 Heat of formation + Delta-G solvation = -123.268579 kcal Electronic energy + Delta-G solvation = -19269.053903 eV Core-core repulsion = 16364.383284 eV Total energy + Delta-G solvation = -2904.670619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16989 -38.17958 -36.97824 -35.81745 -34.39100 -34.00795 -30.62774 -28.01558 -27.54759 -25.78324 -25.12334 -22.56967 -20.56576 -19.47086 -19.34834 -18.68864 -17.21998 -17.10347 -16.07452 -15.75505 -15.64748 -15.59120 -15.02531 -14.86168 -14.74162 -14.25602 -13.85940 -13.69087 -13.39031 -13.21428 -13.17096 -12.97572 -12.67897 -12.61286 -12.54471 -12.42145 -12.00382 -11.96480 -11.80274 -11.48993 -11.32000 -11.09864 -10.98874 -10.74179 -9.82843 -8.90952 -6.68484 -0.57825 1.48869 1.55995 1.76997 1.84109 2.44579 2.91723 2.93611 3.26935 3.58092 3.87364 3.91209 4.04059 4.14155 4.27091 4.43506 4.45953 4.51122 4.61731 4.65951 4.76425 4.81734 4.88712 4.91672 4.97420 5.08691 5.11815 5.22091 5.28814 5.32522 5.37583 5.48127 5.56545 5.72932 5.86448 6.27797 7.15129 8.53130 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.007183 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.927865 B = 3897.281130 C = 4137.706092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.061 0.939 4 C -0.097 4.097 5 C -0.100 4.100 6 H 0.106 0.894 7 C -0.162 4.162 8 C 0.117 3.883 9 N -0.999 5.999 10 S 2.620 3.380 11 O -1.000 7.000 12 O -1.001 7.001 13 C -0.451 4.451 14 C -0.640 4.640 15 H 0.053 0.947 16 C -0.010 4.010 17 N -0.910 5.910 18 Si 1.107 2.893 19 H -0.270 1.270 20 H -0.266 1.266 21 H -0.265 1.265 22 C 0.121 3.879 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.265 0.735 36 H 0.089 0.911 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 -8.861 -8.958 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 H 0.080 0.920 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.124 0.876 7 C -0.220 4.220 8 C -0.007 4.007 9 N -0.837 5.837 10 S 2.719 3.281 11 O -0.990 6.990 12 O -0.992 6.992 13 C -0.584 4.584 14 C -0.678 4.678 15 H 0.071 0.929 16 C -0.213 4.213 17 N -0.544 5.544 18 Si 0.926 3.074 19 H -0.195 1.195 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.004 4.004 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.961 -8.046 -7.776 13.733 hybrid contribution -0.686 -0.646 -0.733 1.194 sum -8.647 -8.692 -8.509 14.924 Atomic orbital electron populations 1.21746 0.92914 1.02900 1.02286 1.21678 0.97017 0.99587 0.95038 0.92042 1.21527 0.93453 1.01456 0.97041 1.21513 0.97068 0.95563 0.97829 0.87591 1.22064 1.00453 0.97263 1.02176 1.21685 0.97525 0.98089 0.83424 1.57610 1.16302 1.75674 1.34144 1.04441 0.72654 0.77517 0.73478 1.93426 1.49938 1.68980 1.86690 1.93424 1.68195 1.87764 1.49806 1.28012 1.05082 1.19431 1.05856 1.21659 1.36524 1.00966 1.08671 0.92924 1.27365 0.98004 0.94216 1.01707 1.70899 1.33457 1.39380 1.10630 0.83106 0.75239 0.76217 0.72865 1.19484 1.19064 1.19033 1.21752 0.77684 1.02125 0.98858 0.91101 0.92989 0.91327 0.90295 0.90083 0.93901 0.91099 0.93755 0.90863 0.89071 0.91099 0.90312 0.92556 0.89274 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.20 71.98 0.66 -1.77 16 2 C -0.11 -2.53 2.54 -10.57 -0.03 -2.56 16 3 H 0.06 1.63 6.33 -2.39 -0.02 1.61 16 4 C -0.10 -1.76 4.71 30.62 0.14 -1.62 16 5 C -0.10 -2.16 3.21 -10.72 -0.03 -2.20 16 6 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 7 C -0.16 -4.39 8.16 71.98 0.59 -3.80 16 8 C 0.12 3.17 5.71 86.36 0.49 3.66 16 9 N -1.00 -32.82 2.65 -512.29 -1.36 -34.18 16 10 S 2.62 116.66 5.33 -56.49 -0.30 116.36 16 11 O -1.00 -48.86 16.73 -127.65 -2.14 -51.00 16 12 O -1.00 -49.16 16.71 -127.65 -2.13 -51.29 16 13 C -0.45 -22.40 4.23 71.24 0.30 -22.09 16 14 C -0.64 -36.86 9.13 25.60 0.23 -36.63 16 15 H 0.05 3.04 7.71 -2.91 -0.02 3.02 16 16 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 17 N -0.91 -53.62 13.65 21.45 0.29 -53.33 16 18 Si 1.11 49.43 29.90 68.60 2.05 51.48 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 C 0.12 3.32 5.63 86.51 0.49 3.81 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.40 4.39 -2.39 -0.01 1.39 16 31 H 0.07 2.22 7.10 -2.39 -0.02 2.20 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 3.49 8.01 -2.39 -0.02 3.47 16 34 H 0.08 3.84 6.96 -2.39 -0.02 3.82 16 35 H 0.26 15.40 7.22 -92.71 -0.67 14.73 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.20 7.09 -2.39 -0.02 2.18 16 Total: -1.00 -71.58 300.50 0.86 -70.71 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.14 Total: 14.58 kcal Atomic # 6 Polarization: -66.64 SS G_CDS: 3.31 Total: -63.33 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.07 Total: -87.51 kcal Atomic # 8 Polarization: -98.02 SS G_CDS: -4.27 Total: -102.29 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Atomic # 16 Polarization: 116.66 SS G_CDS: -0.30 Total: 116.36 kcal Total: -71.58 0.86 -70.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335911772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.554 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds