Wall clock time and date at job start Mon Mar 30 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.33044 * 2 1 4 4 C 1.47097 * 109.19293 * 119.56503 * 2 1 3 5 5 C 1.52564 * 114.33024 * 182.97088 * 4 2 1 6 6 C 1.50881 * 109.36289 * 274.99077 * 5 4 2 7 7 C 1.53951 * 110.09380 * 91.88239 * 6 5 4 8 8 N 1.47579 * 112.12580 * 319.44944 * 7 6 5 9 9 S 1.65593 * 118.62547 * 137.87208 * 8 7 6 10 10 O 1.42103 * 104.27784 * 26.02833 * 9 8 7 11 11 O 1.42101 * 104.27834 * 153.88579 * 9 8 7 12 12 C 1.81402 * 104.45261 * 269.95401 * 9 8 7 13 13 C 1.50701 * 109.47200 * 180.02562 * 12 9 8 14 14 H 1.07993 * 119.99892 * 359.97438 * 13 12 9 15 15 C 1.37874 * 119.99638 * 180.02562 * 13 12 9 16 16 N 1.31516 * 120.00110 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99856 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47106 * 89.99418 * 17 15 13 19 19 H 1.48491 * 109.47254 * 210.00012 * 17 15 13 20 20 H 1.48502 * 109.46796 * 329.99943 * 17 15 13 21 21 C 1.44581 * 122.72887 * 317.82641 * 8 7 6 22 22 H 1.09002 * 109.47060 * 179.65837 * 1 2 3 23 23 H 1.09008 * 109.47017 * 299.64974 * 1 2 3 24 24 H 1.08989 * 109.47640 * 59.65079 * 1 2 3 25 25 H 1.08998 * 108.51385 * 304.23069 * 4 2 1 26 26 H 1.09007 * 108.50789 * 61.87533 * 4 2 1 27 27 H 1.09007 * 109.48672 * 34.95488 * 5 4 2 28 28 H 1.09000 * 109.49426 * 155.00038 * 5 4 2 29 29 H 1.08999 * 109.36747 * 212.07705 * 6 5 4 30 30 H 1.08999 * 109.36336 * 331.82112 * 6 5 4 31 31 H 1.08999 * 108.94515 * 80.12458 * 7 6 5 32 32 H 1.09001 * 108.94632 * 198.83958 * 7 6 5 33 33 H 1.08995 * 109.46929 * 300.00691 * 12 9 8 34 34 H 1.08998 * 109.46684 * 60.00033 * 12 9 8 35 35 H 0.96997 * 119.99675 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.45194 * 330.73301 * 21 8 7 37 37 H 1.08997 * 109.44616 * 210.78683 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8907 1.0285 0.0000 4 6 2.0135 -0.6855 1.2083 5 6 3.5313 -0.6905 1.3632 6 6 4.1094 -1.8489 0.5883 7 6 4.4777 -1.4001 -0.8375 8 7 3.4632 -0.4976 -1.4157 9 16 3.9734 0.8275 -2.2677 10 8 5.2579 0.4597 -2.7516 11 8 2.9043 1.1017 -3.1627 12 6 4.1138 2.1395 -1.0229 13 6 4.5759 3.4123 -1.6845 14 1 4.7664 3.4300 -2.7474 15 6 4.7563 4.5538 -0.9326 16 7 4.5247 4.5320 0.3618 17 14 5.3283 6.1317 -1.7527 18 1 4.1476 6.9125 -2.2014 19 1 6.1149 6.9362 -0.7837 20 1 6.1772 5.8004 -2.9253 21 6 2.0425 -0.7230 -1.2700 22 1 -0.3633 -1.0277 -0.0061 23 1 -0.3633 0.5084 0.8932 24 1 -0.3634 0.5192 -0.8867 25 1 1.5782 -0.1978 2.0805 26 1 1.6671 -1.7187 1.1821 27 1 3.9392 0.2442 0.9784 28 1 3.7890 -0.7930 2.4174 29 1 5.0032 -2.2126 1.0951 30 1 3.3731 -2.6507 0.5340 31 1 5.4366 -0.8827 -0.8091 32 1 4.5699 -2.2809 -1.4730 33 1 3.1421 2.3043 -0.5576 34 1 4.8354 1.8425 -0.2619 35 1 4.6513 5.3352 0.8907 36 1 1.8519 -1.7925 -1.1806 37 1 1.5217 -0.3334 -2.1446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336254685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:22 Heat of formation + Delta-G solvation = -94.101337 kcal Electronic energy + Delta-G solvation = -19323.433603 eV Core-core repulsion = 16420.027770 eV Total energy + Delta-G solvation = -2903.405833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.81945 -36.23402 -34.99838 -33.97968 -33.33729 -32.93419 -29.02398 -27.88566 -25.53025 -23.95498 -23.44511 -20.34482 -20.04765 -18.08811 -17.21383 -16.45905 -16.12412 -15.53361 -14.78340 -14.56045 -14.26275 -14.23643 -13.45396 -13.39648 -12.60539 -12.52912 -12.44017 -12.08217 -11.92023 -11.78009 -11.41545 -11.26848 -11.25789 -11.14188 -10.91113 -10.83610 -10.63135 -10.46838 -10.31744 -10.26444 -10.10736 -9.74738 -9.29122 -8.70209 -8.36054 -6.32655 -4.42998 1.33626 3.21156 3.26534 3.32522 3.49468 4.24306 4.76711 4.79926 4.92913 5.00584 5.07469 5.10315 5.24741 5.32021 5.40852 5.51963 5.71722 5.83754 5.84167 5.89166 5.96891 6.02320 6.13672 6.15759 6.30388 6.35188 6.43503 6.49012 6.57384 6.61385 6.73978 6.87794 7.21244 7.45455 7.76680 8.58924 9.24470 10.78795 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.022269 B = 0.007727 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.075082 B = 3622.645529 C = 3899.119496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 H 0.081 0.919 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.127 4.127 7 C 0.125 3.875 8 N -1.001 6.001 9 S 2.575 3.425 10 O -0.981 6.981 11 O -0.979 6.979 12 C -0.419 4.419 13 C -0.534 4.534 14 H 0.068 0.932 15 C 0.077 3.923 16 N -0.877 5.877 17 Si 0.902 3.098 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.125 3.875 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.268 0.732 36 H 0.072 0.928 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 -11.140 3.494 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.099 0.901 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.166 4.166 7 C 0.000 4.000 8 N -0.835 5.835 9 S 2.676 3.324 10 O -0.971 6.971 11 O -0.969 6.969 12 C -0.555 4.555 13 C -0.573 4.573 14 H 0.086 0.914 15 C -0.129 4.129 16 N -0.513 5.513 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.002 4.002 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.564 -11.130 2.701 12.329 hybrid contribution 0.198 1.019 0.493 1.150 sum -4.366 -10.111 3.194 11.467 Atomic orbital electron populations 1.21774 0.94766 1.01418 1.02147 1.21040 0.95978 1.01476 0.96042 0.90077 1.20416 0.95784 1.00260 0.97663 1.21116 0.95661 0.99728 0.99535 1.21754 1.01169 0.98392 0.95281 1.21537 0.90623 0.94122 0.93737 1.57376 1.11683 1.42656 1.71828 1.06165 0.73473 0.75312 0.77460 1.93464 1.41927 1.82229 1.79524 1.93449 1.55981 1.84943 1.62576 1.27848 1.06546 1.10157 1.10908 1.20328 1.49047 0.93240 0.94727 0.91412 1.24906 0.94029 0.99144 0.94802 1.69950 1.46522 1.29410 1.05450 0.86408 0.79196 0.82052 0.79545 1.19910 1.20625 1.19102 1.21305 0.80406 1.00735 0.97715 0.92939 0.92591 0.92188 0.92655 0.92770 0.90639 0.92163 0.91174 0.91897 0.89846 0.92308 0.89609 0.89879 0.92276 0.90959 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.10 37.15 0.34 -1.38 16 2 C -0.13 -1.78 2.62 -92.47 -0.24 -2.02 16 3 H 0.08 1.37 6.06 -51.93 -0.31 1.05 16 4 C -0.10 -1.31 4.38 -29.79 -0.13 -1.44 16 5 C -0.12 -1.64 5.51 -28.02 -0.15 -1.79 16 6 C -0.13 -1.51 5.71 -27.30 -0.16 -1.67 16 7 C 0.13 1.82 5.90 -2.96 -0.02 1.81 16 8 N -1.00 -16.99 2.46 -113.32 -0.28 -17.27 16 9 S 2.57 56.31 5.23 -107.50 -0.56 55.75 16 10 O -0.98 -23.62 16.70 -57.54 -0.96 -24.58 16 11 O -0.98 -23.42 16.42 -57.54 -0.94 -24.36 16 12 C -0.42 -10.12 5.36 36.01 0.19 -9.92 16 13 C -0.53 -14.80 9.13 -34.44 -0.31 -15.11 16 14 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 15 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 16 N -0.88 -24.57 13.29 55.43 0.74 -23.84 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.12 1.86 4.92 -4.08 -0.02 1.84 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 24 H 0.06 0.74 8.14 -51.94 -0.42 0.31 16 25 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 26 H 0.05 0.60 7.35 -51.93 -0.38 0.22 16 27 H 0.07 1.21 6.42 -51.92 -0.33 0.87 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.67 7.31 -51.93 -0.38 0.29 16 31 H 0.08 1.29 7.19 -51.93 -0.37 0.92 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 2.06 6.23 -51.93 -0.32 1.73 16 34 H 0.08 1.99 7.55 -51.92 -0.39 1.60 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 37 H 0.09 1.45 6.72 -51.93 -0.35 1.10 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -31.85 298.90 -8.89 -40.75 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.76 Total: 0.73 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -0.60 Total: -27.66 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.46 Total: -41.11 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.91 Total: -48.95 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 56.31 SS G_CDS: -0.56 Total: 55.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.85 -8.89 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336254685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.356 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds