Wall clock time and date at job start Mon Mar 30 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.08108 * 2 1 4 4 C 1.53199 * 110.10350 * 121.56426 * 2 1 3 5 5 N 1.46451 * 113.70507 * 146.80364 * 4 2 1 6 6 C 1.46497 * 126.08447 * 178.24368 * 5 4 2 7 7 C 1.52999 * 109.46992 * 85.00259 * 6 5 4 8 8 C 1.52998 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47303 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47525 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 9 15 15 H 1.48494 * 109.47225 * 180.27306 * 14 12 10 16 16 H 1.48506 * 109.46866 * 300.27330 * 14 12 10 17 17 H 1.48498 * 109.47306 * 60.26614 * 14 12 10 18 18 S 1.67287 * 107.82957 * 358.51458 * 5 4 2 19 19 O 1.42095 * 105.40977 * 94.73379 * 18 5 4 20 20 O 1.42112 * 105.40125 * 224.99404 * 18 5 4 21 21 C 1.55558 * 110.15294 * 238.40723 * 2 1 3 22 22 H 1.09001 * 109.46915 * 298.43191 * 1 2 3 23 23 H 1.08998 * 109.47567 * 58.43032 * 1 2 3 24 24 H 1.09001 * 109.46847 * 178.44064 * 1 2 3 25 25 H 1.09001 * 108.64622 * 25.69392 * 4 2 1 26 26 H 1.09001 * 108.64664 * 267.91314 * 4 2 1 27 27 H 1.09003 * 109.47268 * 325.00778 * 6 5 4 28 28 H 1.08993 * 109.47301 * 205.00395 * 6 5 4 29 29 H 1.09000 * 109.47527 * 59.99822 * 7 6 5 30 30 H 1.09007 * 109.47302 * 300.00282 * 7 6 5 31 31 H 1.08995 * 109.47540 * 59.99980 * 8 7 6 32 32 H 1.09001 * 109.46719 * 299.99780 * 8 7 6 33 33 H 1.09009 * 109.47378 * 59.99763 * 9 8 7 34 34 H 1.08998 * 109.47458 * 300.00225 * 9 8 7 35 35 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 36 36 H 1.09000 * 111.36599 * 321.39103 * 21 2 1 37 37 H 1.09002 * 111.36892 * 86.13167 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0237 0.0000 4 6 2.0566 -0.7531 1.2258 5 7 3.3127 -1.4662 0.9840 6 6 4.0699 -2.2391 1.9715 7 6 3.5090 -3.6607 2.0455 8 6 4.2994 -4.4678 3.0772 9 6 3.7389 -5.8895 3.1508 10 6 4.5178 -6.6848 4.1666 11 1 5.3311 -6.2223 4.7061 12 6 4.1922 -8.0028 4.4072 13 7 3.2016 -8.5659 3.7505 14 14 5.1626 -8.9907 5.6609 15 1 4.6224 -10.3723 5.7279 16 1 6.5909 -9.0367 5.2566 17 1 5.0463 -8.3484 6.9947 18 16 3.7327 -1.2347 -0.6187 19 8 4.6219 -0.1264 -0.6197 20 8 4.1242 -2.5152 -1.0949 21 6 2.0659 -0.7650 -1.2439 22 1 -0.3633 0.4893 0.9037 23 1 -0.3634 0.5380 -0.8755 24 1 -0.3633 -1.0273 -0.0280 25 1 1.3024 -1.4734 1.5428 26 1 2.2117 -0.0382 2.0339 27 1 3.9843 -1.7635 2.9485 28 1 5.1185 -2.2772 1.6766 29 1 3.5945 -4.1364 1.0685 30 1 2.4603 -3.6226 2.3404 31 1 4.2135 -3.9921 4.0541 32 1 5.3482 -4.5060 2.7826 33 1 3.8252 -6.3652 2.1737 34 1 2.6900 -5.8519 3.4450 35 1 2.6974 -8.0527 3.0998 36 1 1.4581 -1.6430 -1.4624 37 1 2.1385 -0.1101 -2.1122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385208025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:13 Heat of formation + Delta-G solvation = -91.479028 kcal Electronic energy + Delta-G solvation = -17920.536368 eV Core-core repulsion = 15017.244247 eV Total energy + Delta-G solvation = -2903.292121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.22421 -37.15475 -36.05530 -35.54078 -33.82008 -31.94912 -28.71389 -28.07986 -25.93849 -23.99489 -21.92287 -21.32123 -20.29037 -18.99388 -17.36661 -16.85323 -16.53831 -16.05921 -15.54989 -14.99760 -14.55953 -13.96855 -13.68754 -13.52364 -13.33533 -13.10204 -12.80941 -12.59971 -12.45485 -12.17968 -12.06460 -11.83704 -11.62396 -11.32837 -11.20373 -10.86550 -10.72407 -10.63727 -10.41671 -10.08507 -9.75486 -9.72717 -8.96312 -8.41605 -8.26237 -6.29926 -3.98215 0.06545 2.33957 3.43173 3.47357 3.49972 3.52439 3.68463 3.90370 4.22544 4.48653 4.59917 4.65074 4.91071 4.98394 5.12540 5.19101 5.29461 5.45246 5.47483 5.51693 5.55257 5.65010 5.71129 5.73938 5.99669 6.15512 6.43682 6.58999 6.72782 6.85615 7.06613 7.49657 7.63378 8.29761 8.53425 8.95516 9.74242 11.10793 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.035497 B = 0.003884 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.607093 B = 7207.748269 C = 7481.614540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.102 0.898 4 C 0.081 3.919 5 N -0.985 5.985 6 C 0.160 3.840 7 C -0.143 4.143 8 C -0.102 4.102 9 C 0.008 3.992 10 C -0.601 4.601 11 H 0.048 0.952 12 C 0.013 3.987 13 N -0.915 5.915 14 Si 1.069 2.931 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 S 2.561 3.439 19 O -0.956 6.956 20 O -0.950 6.950 21 C -0.590 4.590 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.143 0.857 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 20.294 -8.842 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.045 4.045 5 N -0.826 5.826 6 C 0.037 3.963 7 C -0.182 4.182 8 C -0.141 4.141 9 C -0.029 4.029 10 C -0.640 4.640 11 H 0.066 0.934 12 C -0.191 4.191 13 N -0.552 5.552 14 Si 0.897 3.103 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.215 1.215 18 S 2.657 3.343 19 O -0.946 6.946 20 O -0.940 6.940 21 C -0.721 4.721 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.850 18.643 -8.509 21.059 hybrid contribution -0.872 1.675 -0.597 1.981 sum -5.722 20.318 -9.106 22.988 Atomic orbital electron populations 1.21724 0.91677 1.03173 1.02813 1.21963 0.99495 0.99854 0.90213 0.88010 1.21664 0.87478 0.96950 0.98416 1.57077 1.32751 1.64639 1.28175 1.21189 0.93448 0.90836 0.90803 1.22174 1.00420 0.94209 1.01407 1.21452 0.98703 0.97476 0.96451 1.19222 0.95875 0.91098 0.96752 1.22093 1.18785 0.98726 1.24361 0.93383 1.25854 0.97321 0.95941 0.99948 1.70778 1.19625 1.39857 1.24896 0.83549 0.75343 0.76092 0.75280 1.20817 1.21465 1.21516 1.06767 0.77096 0.75163 0.75274 1.93634 1.60369 1.54984 1.85580 1.93638 1.81200 1.39477 1.79638 1.30933 1.23355 1.11145 1.06633 0.91421 0.91501 0.91540 0.90527 0.90427 0.90466 0.90665 0.91329 0.92197 0.93178 0.93062 0.97431 0.97642 0.92144 0.83890 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.04 37.16 0.34 -0.35 16 2 C -0.09 -0.62 3.29 -89.16 -0.29 -0.91 16 3 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.08 0.70 6.43 -3.97 -0.03 0.68 16 5 N -0.98 -11.89 3.33 -114.31 -0.38 -12.27 16 6 C 0.16 2.25 6.24 -4.04 -0.03 2.23 16 7 C -0.14 -2.47 5.54 -26.73 -0.15 -2.62 16 8 C -0.10 -2.15 5.15 -26.73 -0.14 -2.29 16 9 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 10 C -0.60 -17.71 9.11 -34.44 -0.31 -18.03 16 11 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 12 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 13 N -0.92 -28.84 13.65 55.43 0.76 -28.08 16 14 Si 1.07 25.91 29.90 -169.99 -5.08 20.82 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 S 2.56 30.95 6.19 -107.50 -0.67 30.28 16 19 O -0.96 -14.06 18.14 -57.37 -1.04 -15.10 16 20 O -0.95 -15.48 18.04 -57.37 -1.03 -16.52 16 21 C -0.59 -4.17 7.06 38.52 0.27 -3.90 16 22 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 25 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.01 0.21 8.01 -51.92 -0.42 -0.21 16 34 H 0.01 0.15 8.00 -51.93 -0.42 -0.27 16 35 H 0.27 8.43 7.22 -40.82 -0.29 8.14 16 36 H 0.14 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -37.04 316.69 -9.45 -46.49 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -6.22 Total: -5.57 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -0.55 Total: -24.83 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.38 Total: -40.35 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -2.08 Total: -31.62 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.82 kcal Atomic # 16 Polarization: 30.95 SS G_CDS: -0.67 Total: 30.28 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -37.04 -9.45 -46.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385208025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.990 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds