Wall clock time and date at job start Mon Mar 30 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.08108 * 2 1 4 4 C 1.53199 * 110.10350 * 121.56426 * 2 1 3 5 5 N 1.46451 * 113.70507 * 146.80364 * 4 2 1 6 6 C 1.46497 * 126.08447 * 178.24368 * 5 4 2 7 7 C 1.52999 * 109.46992 * 85.00259 * 6 5 4 8 8 C 1.52998 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47303 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47525 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 9 15 15 H 1.48494 * 109.47225 * 180.27306 * 14 12 10 16 16 H 1.48506 * 109.46866 * 300.27330 * 14 12 10 17 17 H 1.48498 * 109.47306 * 60.26614 * 14 12 10 18 18 S 1.67287 * 107.82957 * 358.51458 * 5 4 2 19 19 O 1.42095 * 105.40977 * 94.73379 * 18 5 4 20 20 O 1.42112 * 105.40125 * 224.99404 * 18 5 4 21 21 C 1.55558 * 110.15294 * 238.40723 * 2 1 3 22 22 H 1.09001 * 109.46915 * 298.43191 * 1 2 3 23 23 H 1.08998 * 109.47567 * 58.43032 * 1 2 3 24 24 H 1.09001 * 109.46847 * 178.44064 * 1 2 3 25 25 H 1.09001 * 108.64622 * 25.69392 * 4 2 1 26 26 H 1.09001 * 108.64664 * 267.91314 * 4 2 1 27 27 H 1.09003 * 109.47268 * 325.00778 * 6 5 4 28 28 H 1.08993 * 109.47301 * 205.00395 * 6 5 4 29 29 H 1.09000 * 109.47527 * 59.99822 * 7 6 5 30 30 H 1.09007 * 109.47302 * 300.00282 * 7 6 5 31 31 H 1.08995 * 109.47540 * 59.99980 * 8 7 6 32 32 H 1.09001 * 109.46719 * 299.99780 * 8 7 6 33 33 H 1.09009 * 109.47378 * 59.99763 * 9 8 7 34 34 H 1.08998 * 109.47458 * 300.00225 * 9 8 7 35 35 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 36 36 H 1.09000 * 111.36599 * 321.39103 * 21 2 1 37 37 H 1.09002 * 111.36892 * 86.13167 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0237 0.0000 4 6 2.0566 -0.7531 1.2258 5 7 3.3127 -1.4662 0.9840 6 6 4.0699 -2.2391 1.9715 7 6 3.5090 -3.6607 2.0455 8 6 4.2994 -4.4678 3.0772 9 6 3.7389 -5.8895 3.1508 10 6 4.5178 -6.6848 4.1666 11 1 5.3311 -6.2223 4.7061 12 6 4.1922 -8.0028 4.4072 13 7 3.2016 -8.5659 3.7505 14 14 5.1626 -8.9907 5.6609 15 1 4.6224 -10.3723 5.7279 16 1 6.5909 -9.0367 5.2566 17 1 5.0463 -8.3484 6.9947 18 16 3.7327 -1.2347 -0.6187 19 8 4.6219 -0.1264 -0.6197 20 8 4.1242 -2.5152 -1.0949 21 6 2.0659 -0.7650 -1.2439 22 1 -0.3633 0.4893 0.9037 23 1 -0.3634 0.5380 -0.8755 24 1 -0.3633 -1.0273 -0.0280 25 1 1.3024 -1.4734 1.5428 26 1 2.2117 -0.0382 2.0339 27 1 3.9843 -1.7635 2.9485 28 1 5.1185 -2.2772 1.6766 29 1 3.5945 -4.1364 1.0685 30 1 2.4603 -3.6226 2.3404 31 1 4.2135 -3.9921 4.0541 32 1 5.3482 -4.5060 2.7826 33 1 3.8252 -6.3652 2.1737 34 1 2.6900 -5.8519 3.4450 35 1 2.6974 -8.0527 3.0998 36 1 1.4581 -1.6430 -1.4624 37 1 2.1385 -0.1101 -2.1122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385208025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:13 Heat of formation + Delta-G solvation = -118.418441 kcal Electronic energy + Delta-G solvation = -17921.704549 eV Core-core repulsion = 15017.244247 eV Total energy + Delta-G solvation = -2904.460302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.00518 -38.21302 -37.20030 -36.85645 -35.44902 -33.58332 -30.15570 -28.74374 -27.15227 -25.57999 -23.58116 -22.06936 -21.85456 -19.96183 -18.89956 -18.16488 -17.69438 -16.99993 -16.48193 -16.02193 -15.84319 -15.63105 -15.18426 -14.72771 -14.42062 -14.16547 -13.85053 -13.80515 -13.35082 -13.26495 -13.14568 -13.03113 -12.94614 -12.57950 -12.40644 -12.09131 -12.04835 -11.95546 -11.84623 -11.66505 -11.49916 -11.32154 -10.69739 -10.54425 -9.87651 -8.69637 -6.39912 -0.80503 1.44299 1.52214 1.61468 1.80802 2.57280 2.59674 2.84027 3.15549 3.23412 3.52686 3.86440 3.88437 4.03547 4.17691 4.31167 4.37806 4.48304 4.55049 4.63645 4.72169 4.73203 4.79670 4.92380 5.04428 5.05278 5.10968 5.18663 5.19700 5.38957 5.47252 5.55865 5.65368 6.00867 6.18554 6.57156 7.43082 8.70933 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.035497 B = 0.003884 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.607093 B = 7207.748269 C = 7481.614540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.119 0.881 4 C 0.070 3.930 5 N -0.990 5.990 6 C 0.164 3.836 7 C -0.131 4.131 8 C -0.093 4.093 9 C 0.006 3.994 10 C -0.621 4.621 11 H 0.053 0.947 12 C -0.042 4.042 13 N -0.939 5.939 14 Si 1.120 2.880 15 H -0.283 1.283 16 H -0.270 1.270 17 H -0.265 1.265 18 S 2.541 3.459 19 O -0.992 6.992 20 O -1.006 7.006 21 C -0.550 4.550 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.047 0.953 33 H -0.020 1.020 34 H -0.009 1.009 35 H 0.254 0.746 36 H 0.158 0.842 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 22.151 -8.321 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.137 0.863 4 C -0.055 4.055 5 N -0.831 5.831 6 C 0.040 3.960 7 C -0.171 4.171 8 C -0.132 4.132 9 C -0.031 4.031 10 C -0.659 4.659 11 H 0.071 0.929 12 C -0.239 4.239 13 N -0.576 5.576 14 Si 0.941 3.059 15 H -0.208 1.208 16 H -0.196 1.196 17 H -0.190 1.190 18 S 2.643 3.357 19 O -0.981 6.981 20 O -0.996 6.996 21 C -0.685 4.685 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.066 0.934 33 H -0.001 1.001 34 H 0.009 0.991 35 H 0.063 0.937 36 H 0.176 0.824 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.768 20.526 -7.986 22.767 hybrid contribution -0.687 1.150 -0.808 1.564 sum -6.455 21.676 -8.794 24.266 Atomic orbital electron populations 1.21761 0.89984 1.03434 1.04143 1.22115 1.00620 1.00145 0.88346 0.86259 1.21998 0.85925 0.97329 1.00262 1.56936 1.33936 1.64465 1.27776 1.20976 0.93209 0.89219 0.92582 1.22009 1.00460 0.95771 0.98835 1.21298 0.98654 0.94773 0.98445 1.19205 0.95130 0.94195 0.94597 1.22563 1.19074 0.99487 1.24800 0.92902 1.27540 0.97406 0.97714 1.01252 1.70920 1.20957 1.39970 1.25783 0.82913 0.74650 0.74608 0.73778 1.20821 1.19560 1.19022 1.07119 0.79380 0.73852 0.75348 1.93582 1.63541 1.55038 1.85947 1.93569 1.83573 1.42038 1.80418 1.30766 1.17167 1.12455 1.08124 0.90403 0.89955 0.91859 0.90219 0.88986 0.88197 0.91371 0.93590 0.91421 0.91822 0.93410 1.00148 0.99059 0.93712 0.82393 0.81024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 9.04 71.98 0.65 -0.16 16 2 C -0.09 -0.86 3.29 -9.85 -0.03 -0.89 16 3 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 4 C 0.07 1.04 6.43 86.46 0.56 1.60 16 5 N -0.99 -23.03 3.33 -515.55 -1.72 -24.75 16 6 C 0.16 4.55 6.24 86.38 0.54 5.09 16 7 C -0.13 -4.61 5.54 30.59 0.17 -4.44 16 8 C -0.09 -3.97 5.15 30.59 0.16 -3.82 16 9 C 0.01 0.32 4.28 29.85 0.13 0.45 16 10 C -0.62 -37.03 9.11 25.60 0.23 -36.80 16 11 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 12 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 13 N -0.94 -60.39 13.65 21.45 0.29 -60.10 16 14 Si 1.12 51.56 29.90 68.60 2.05 53.61 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 S 2.54 60.76 6.19 -56.49 -0.35 60.41 16 19 O -0.99 -29.19 18.14 -127.81 -2.32 -31.51 16 20 O -1.01 -34.26 18.04 -127.81 -2.31 -36.56 16 21 C -0.55 -6.02 7.06 72.86 0.51 -5.50 16 22 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 23 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.06 0.45 8.12 -2.39 -0.02 0.43 16 25 H 0.08 1.14 7.75 -2.39 -0.02 1.13 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H -0.02 -1.18 8.01 -2.38 -0.02 -1.20 16 34 H -0.01 -0.51 8.00 -2.39 -0.02 -0.53 16 35 H 0.25 16.58 7.22 -92.70 -0.67 15.91 16 36 H 0.16 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -83.00 316.69 0.15 -82.85 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.12 Total: 2.60 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 3.38 Total: -46.56 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.43 Total: -84.85 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -4.62 Total: -68.07 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Atomic # 16 Polarization: 60.76 SS G_CDS: -0.35 Total: 60.41 kcal Total: -83.00 0.15 -82.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385208025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.567 kcal (2) G-P(sol) polarization free energy of solvation -83.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds