Wall clock time and date at job start Mon Mar 30 2020 05:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47032 * 119.99462 * 2 1 3 5 5 H 1.09006 * 115.54767 * 147.18088 * 4 2 1 6 6 C 1.52998 * 117.49798 * 1.51506 * 4 2 1 7 7 C 1.52994 * 117.50296 * 292.85088 * 4 2 1 8 8 C 1.52997 * 117.50030 * 214.98219 * 7 4 2 9 9 C 1.53003 * 117.49595 * 359.97438 * 7 4 2 10 10 N 1.46495 * 109.47408 * 239.99517 * 2 1 3 11 11 C 1.46499 * 119.99977 * 300.00600 * 10 2 1 12 12 S 1.65605 * 119.99958 * 119.99651 * 10 2 1 13 13 O 1.42108 * 106.39939 * 203.54387 * 12 10 2 14 14 O 1.42093 * 106.40117 * 336.46481 * 12 10 2 15 15 C 1.76203 * 107.21480 * 90.00862 * 12 10 2 16 16 H 1.08002 * 120.00026 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99700 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00189 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99915 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47331 * 89.99969 * 19 17 15 21 21 H 1.48506 * 109.46972 * 210.00075 * 19 17 15 22 22 H 1.48499 * 109.47049 * 329.99584 * 19 17 15 23 23 H 1.09003 * 109.47384 * 297.68677 * 1 2 3 24 24 H 1.09002 * 109.47081 * 57.68384 * 1 2 3 25 25 H 1.09000 * 109.47121 * 177.68922 * 1 2 3 26 26 H 1.08990 * 117.50218 * 359.97438 * 6 4 2 27 27 H 1.09005 * 117.49759 * 145.02431 * 6 4 2 28 28 H 1.08993 * 109.47346 * 60.00144 * 8 7 4 29 29 H 1.09001 * 109.46836 * 180.02562 * 8 7 4 30 30 H 1.08998 * 109.46852 * 299.99776 * 8 7 4 31 31 H 1.08994 * 109.47327 * 72.16483 * 9 7 4 32 32 H 1.08998 * 109.47146 * 192.16197 * 9 7 4 33 33 H 1.09002 * 109.47501 * 312.16207 * 9 7 4 34 34 H 1.08996 * 109.47691 * 89.99407 * 11 10 2 35 35 H 1.09001 * 109.47175 * 209.99371 * 11 10 2 36 36 H 1.09002 * 109.46951 * 329.99329 * 11 10 2 37 37 H 0.97003 * 120.00189 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.9759 -1.2667 1.1281 6 6 0.9963 -1.3113 2.1999 7 6 1.7786 -0.0589 2.6035 8 6 2.8506 -0.2134 3.6841 9 6 1.0277 1.2742 2.6048 10 7 2.0183 -0.6907 -1.1960 11 6 1.6644 -2.0932 -1.4278 12 16 2.9704 0.1141 -2.2862 13 8 2.8227 -0.5648 -3.5259 14 8 2.6903 1.4971 -2.1193 15 6 4.6445 -0.1184 -1.7880 16 1 4.8699 -0.7033 -0.9086 17 6 5.6665 0.4474 -2.5203 18 7 5.3919 1.1602 -3.5909 19 14 7.4412 0.2016 -1.9918 20 1 7.9862 -1.0184 -2.6397 21 1 8.2469 1.3806 -2.3994 22 1 7.5013 0.0474 -0.5161 23 1 -0.3634 0.4775 0.9100 24 1 -0.3633 0.5494 -0.8685 25 1 -0.3633 -1.0268 -0.0414 26 1 -0.0535 -1.1854 1.9355 27 1 1.2459 -2.2447 2.7044 28 1 3.7880 0.2155 3.3300 29 1 2.5322 0.3051 4.5885 30 1 2.9951 -1.2712 3.9039 31 1 -0.0205 1.1011 2.3613 32 1 1.1007 1.7314 3.5915 33 1 1.4680 1.9400 1.8624 34 1 0.7375 -2.1445 -1.9991 35 1 2.4628 -2.5820 -1.9862 36 1 1.5294 -2.5969 -0.4706 37 1 6.1110 1.5579 -4.1063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397836109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:53 Heat of formation + Delta-G solvation = -71.420559 kcal Electronic energy + Delta-G solvation = -19066.448146 eV Core-core repulsion = 16164.025825 eV Total energy + Delta-G solvation = -2902.422321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.23964 -35.24375 -35.22601 -33.90599 -33.03043 -30.33880 -28.68543 -27.11443 -26.14957 -25.83218 -23.51197 -19.88566 -18.78296 -18.18394 -17.26008 -16.26818 -15.73555 -15.04529 -14.61378 -14.21843 -14.05791 -13.59992 -13.43660 -13.06692 -12.67387 -12.59706 -12.25495 -11.97296 -11.88081 -11.69591 -11.59142 -11.21278 -11.19458 -11.13614 -10.93848 -10.63350 -10.58709 -10.24531 -10.12431 -10.09381 -9.53005 -9.36148 -9.22225 -8.85365 -8.12622 -6.66556 -5.28150 2.31356 3.07752 3.14385 3.20934 3.88839 4.08242 4.55966 4.66944 4.82737 4.93457 5.08143 5.21582 5.46849 5.59188 5.63839 5.73946 5.78644 5.83618 5.88463 5.89546 5.96932 6.03243 6.08559 6.12598 6.22864 6.27623 6.28491 6.35472 6.41749 6.52360 6.57077 6.62573 6.92726 7.35894 7.68567 8.01372 8.92267 10.26936 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.008123 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.426637 B = 3446.376290 C = 4123.811264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.180 3.820 3 H 0.103 0.897 4 C -0.147 4.147 5 H 0.110 0.890 6 C -0.179 4.179 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.123 4.123 10 N -1.008 6.008 11 C 0.104 3.896 12 S 2.714 3.286 13 O -1.005 7.005 14 O -1.005 7.005 15 C -1.018 5.018 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.847 5.847 19 Si 0.918 3.082 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.263 1.263 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -3.959 11.968 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.073 3.927 3 H 0.121 0.879 4 C -0.166 4.166 5 H 0.128 0.872 6 C -0.215 4.215 7 C -0.129 4.129 8 C -0.171 4.171 9 C -0.180 4.180 10 N -0.843 5.843 11 C -0.043 4.043 12 S 2.815 3.185 13 O -0.995 6.995 14 O -0.995 6.995 15 C -1.152 5.152 16 H 0.120 0.880 17 C -0.085 4.085 18 N -0.477 5.477 19 Si 0.742 3.258 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.860 -3.379 11.044 13.433 hybrid contribution 1.474 -0.513 0.623 1.681 sum -5.385 -3.893 11.667 13.427 Atomic orbital electron populations 1.22436 0.96047 1.02009 1.02166 1.20133 0.93489 0.96361 0.82747 0.87886 1.22988 1.00365 1.02930 0.90366 0.87207 1.23422 0.97786 0.96488 1.03840 1.21549 1.00462 0.94159 0.96690 1.21356 0.97667 1.01352 0.96698 1.21533 0.99438 0.95021 1.01974 1.57948 1.67984 1.21038 1.37318 1.21174 1.00382 0.82173 1.00541 1.00536 0.74584 0.71933 0.71439 1.93354 1.88104 1.75666 1.42375 1.93341 1.86689 1.33424 1.86062 1.30633 1.15516 1.45824 1.23205 0.88046 1.24743 1.01572 0.90092 0.92059 1.69900 1.36168 1.27447 1.14156 0.86201 0.80973 0.78652 0.79954 1.19230 1.19980 1.18670 0.91281 0.92394 0.92294 0.88305 0.89496 0.92000 0.92471 0.92781 0.91932 0.92489 0.91500 0.93976 0.91280 0.92203 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 7.72 37.16 0.29 -2.16 16 2 C 0.18 3.18 2.39 -67.93 -0.16 3.02 16 3 H 0.10 2.04 6.06 -51.93 -0.31 1.72 16 4 C -0.15 -2.22 4.66 -90.62 -0.42 -2.64 16 5 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 6 C -0.18 -2.15 8.89 -26.69 -0.24 -2.39 16 7 C -0.13 -1.64 2.70 -154.47 -0.42 -2.06 16 8 C -0.11 -1.31 9.83 37.16 0.37 -0.95 16 9 C -0.12 -1.46 8.54 37.16 0.32 -1.15 16 10 N -1.01 -20.76 3.07 -114.61 -0.35 -21.11 16 11 C 0.10 1.80 9.30 59.85 0.56 2.35 16 12 S 2.71 73.21 4.92 -107.50 -0.53 72.68 16 13 O -1.00 -29.80 17.09 -57.17 -0.98 -30.78 16 14 O -1.00 -29.47 16.58 -57.17 -0.95 -30.42 16 15 C -1.02 -28.32 9.75 30.60 0.30 -28.02 16 16 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 17 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 18 N -0.85 -25.20 13.19 55.43 0.73 -24.47 16 19 Si 0.92 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 23 H 0.07 0.84 4.20 -51.93 -0.22 0.62 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.78 6.95 -51.93 -0.36 0.41 16 26 H 0.10 1.10 5.73 -51.93 -0.30 0.81 16 27 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.57 7.85 -51.93 -0.41 0.16 16 30 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 31 H 0.06 0.67 5.67 -51.93 -0.29 0.38 16 32 H 0.06 0.59 7.77 -51.93 -0.40 0.18 16 33 H 0.07 0.89 7.19 -51.93 -0.37 0.52 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.25 7.79 -51.93 -0.40 0.84 16 36 H 0.06 0.85 7.28 -51.93 -0.38 0.47 16 37 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -34.01 306.10 -7.51 -41.52 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.52 Total: 2.52 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 0.49 Total: -30.33 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.38 Total: -45.58 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -1.93 Total: -61.19 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 73.21 SS G_CDS: -0.53 Total: 72.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.01 -7.51 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397836109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.899 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds