Wall clock time and date at job start Mon Mar 30 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47032 * 119.99462 * 2 1 3 5 5 H 1.09006 * 115.54767 * 147.18088 * 4 2 1 6 6 C 1.52998 * 117.49798 * 1.51506 * 4 2 1 7 7 C 1.52994 * 117.50296 * 292.85088 * 4 2 1 8 8 C 1.52997 * 117.50030 * 214.98219 * 7 4 2 9 9 C 1.53003 * 117.49595 * 359.97438 * 7 4 2 10 10 N 1.46495 * 109.47408 * 239.99517 * 2 1 3 11 11 C 1.46499 * 119.99977 * 300.00600 * 10 2 1 12 12 S 1.65605 * 119.99958 * 119.99651 * 10 2 1 13 13 O 1.42108 * 106.39939 * 203.54387 * 12 10 2 14 14 O 1.42093 * 106.40117 * 336.46481 * 12 10 2 15 15 C 1.76203 * 107.21480 * 90.00862 * 12 10 2 16 16 H 1.08002 * 120.00026 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99700 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00189 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99915 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47331 * 89.99969 * 19 17 15 21 21 H 1.48506 * 109.46972 * 210.00075 * 19 17 15 22 22 H 1.48499 * 109.47049 * 329.99584 * 19 17 15 23 23 H 1.09003 * 109.47384 * 297.68677 * 1 2 3 24 24 H 1.09002 * 109.47081 * 57.68384 * 1 2 3 25 25 H 1.09000 * 109.47121 * 177.68922 * 1 2 3 26 26 H 1.08990 * 117.50218 * 359.97438 * 6 4 2 27 27 H 1.09005 * 117.49759 * 145.02431 * 6 4 2 28 28 H 1.08993 * 109.47346 * 60.00144 * 8 7 4 29 29 H 1.09001 * 109.46836 * 180.02562 * 8 7 4 30 30 H 1.08998 * 109.46852 * 299.99776 * 8 7 4 31 31 H 1.08994 * 109.47327 * 72.16483 * 9 7 4 32 32 H 1.08998 * 109.47146 * 192.16197 * 9 7 4 33 33 H 1.09002 * 109.47501 * 312.16207 * 9 7 4 34 34 H 1.08996 * 109.47691 * 89.99407 * 11 10 2 35 35 H 1.09001 * 109.47175 * 209.99371 * 11 10 2 36 36 H 1.09002 * 109.46951 * 329.99329 * 11 10 2 37 37 H 0.97003 * 120.00189 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.9759 -1.2667 1.1281 6 6 0.9963 -1.3113 2.1999 7 6 1.7786 -0.0589 2.6035 8 6 2.8506 -0.2134 3.6841 9 6 1.0277 1.2742 2.6048 10 7 2.0183 -0.6907 -1.1960 11 6 1.6644 -2.0932 -1.4278 12 16 2.9704 0.1141 -2.2862 13 8 2.8227 -0.5648 -3.5259 14 8 2.6903 1.4971 -2.1193 15 6 4.6445 -0.1184 -1.7880 16 1 4.8699 -0.7033 -0.9086 17 6 5.6665 0.4474 -2.5203 18 7 5.3919 1.1602 -3.5909 19 14 7.4412 0.2016 -1.9918 20 1 7.9862 -1.0184 -2.6397 21 1 8.2469 1.3806 -2.3994 22 1 7.5013 0.0474 -0.5161 23 1 -0.3634 0.4775 0.9100 24 1 -0.3633 0.5494 -0.8685 25 1 -0.3633 -1.0268 -0.0414 26 1 -0.0535 -1.1854 1.9355 27 1 1.2459 -2.2447 2.7044 28 1 3.7880 0.2155 3.3300 29 1 2.5322 0.3051 4.5885 30 1 2.9951 -1.2712 3.9039 31 1 -0.0205 1.1011 2.3613 32 1 1.1007 1.7314 3.5915 33 1 1.4680 1.9400 1.8624 34 1 0.7375 -2.1445 -1.9991 35 1 2.4628 -2.5820 -1.9862 36 1 1.5294 -2.5969 -0.4706 37 1 6.1110 1.5579 -4.1063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397836109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:52 Heat of formation + Delta-G solvation = -95.953163 kcal Electronic energy + Delta-G solvation = -19067.511959 eV Core-core repulsion = 16164.025825 eV Total energy + Delta-G solvation = -2903.486134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37582 -37.45321 -36.66045 -36.13581 -35.16765 -31.60918 -29.69372 -28.27967 -28.09917 -27.24853 -24.80124 -21.25658 -20.57325 -19.42382 -19.06944 -18.33274 -17.16715 -16.97797 -16.13746 -15.88167 -15.53307 -14.92059 -14.80530 -14.47995 -14.07189 -13.85994 -13.69201 -13.43682 -13.26150 -13.18655 -13.03663 -12.85025 -12.76378 -12.51564 -12.38294 -12.33233 -12.21108 -12.07387 -11.96012 -11.51740 -11.27149 -10.98393 -10.63289 -10.42936 -9.71212 -8.75666 -7.49560 0.31267 1.30521 1.31345 1.47386 2.18252 2.55713 2.75235 2.93886 3.70136 3.81805 3.91916 3.94779 4.13949 4.23032 4.32300 4.39711 4.51400 4.56579 4.73112 4.78460 4.87805 4.92795 4.95362 4.97933 5.01334 5.11451 5.14889 5.17607 5.23513 5.32282 5.38268 5.41112 5.46426 5.57305 5.89471 6.07389 6.76433 8.19441 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.008123 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.426637 B = 3446.376290 C = 4123.811264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.070 0.930 4 C -0.174 4.174 5 H 0.094 0.906 6 C -0.150 4.150 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.126 4.126 10 N -1.004 6.004 11 C 0.096 3.904 12 S 2.715 3.285 13 O -1.043 7.043 14 O -1.042 7.042 15 C -1.038 5.038 16 H 0.116 0.884 17 C 0.069 3.931 18 N -0.896 5.896 19 Si 0.988 3.012 20 H -0.253 1.253 21 H -0.261 1.261 22 H -0.249 1.249 23 H 0.096 0.904 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 -5.391 14.612 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.194 4.194 5 H 0.112 0.888 6 C -0.186 4.186 7 C -0.129 4.129 8 C -0.171 4.171 9 C -0.182 4.182 10 N -0.842 5.842 11 C -0.048 4.048 12 S 2.817 3.183 13 O -1.033 7.033 14 O -1.032 7.032 15 C -1.171 5.171 16 H 0.134 0.866 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.806 3.194 20 H -0.177 1.177 21 H -0.185 1.185 22 H -0.172 1.172 23 H 0.114 0.886 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.113 -4.811 13.686 16.157 hybrid contribution 1.460 -0.074 -0.153 1.469 sum -5.653 -4.885 13.532 15.458 Atomic orbital electron populations 1.22440 0.93452 1.03451 1.02862 1.20320 0.95502 0.94835 0.82621 0.91208 1.22770 1.01252 1.05060 0.90344 0.88762 1.23520 0.97581 0.96664 1.00867 1.21731 1.00952 0.95068 0.95108 1.21385 0.96581 1.02223 0.96933 1.21575 0.99893 0.94375 1.02394 1.57444 1.67170 1.22212 1.37343 1.21433 1.00415 0.80268 1.02733 1.00089 0.75070 0.71420 0.71678 1.93290 1.88677 1.76121 1.45203 1.93279 1.87211 1.35938 1.86751 1.30973 1.16363 1.46048 1.23758 0.86614 1.26027 1.07195 0.89314 0.91790 1.69994 1.38222 1.28796 1.15717 0.85165 0.74379 0.79538 0.80322 1.17701 1.18537 1.17171 0.88587 0.93995 0.90162 0.86791 0.87688 0.93560 0.90602 0.91767 0.90544 0.90643 0.93818 0.92639 0.92592 0.88394 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 7.72 71.98 0.56 -3.93 16 2 C 0.17 6.09 2.39 44.99 0.11 6.20 16 3 H 0.07 2.89 6.06 -2.38 -0.01 2.88 16 4 C -0.17 -5.01 4.66 -10.79 -0.05 -5.06 16 5 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 6 C -0.15 -3.01 8.89 30.62 0.27 -2.74 16 7 C -0.13 -2.96 2.70 -52.16 -0.14 -3.10 16 8 C -0.11 -2.35 9.83 71.98 0.71 -1.65 16 9 C -0.13 -2.73 8.54 71.98 0.61 -2.12 16 10 N -1.00 -41.70 3.07 -516.53 -1.59 -43.29 16 11 C 0.10 3.25 9.30 127.77 1.19 4.44 16 12 S 2.71 152.05 4.92 -56.49 -0.28 151.77 16 13 O -1.04 -64.37 17.09 -128.00 -2.19 -66.55 16 14 O -1.04 -64.22 16.58 -128.00 -2.12 -66.34 16 15 C -1.04 -59.00 9.75 67.73 0.66 -58.34 16 16 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 17 C 0.07 3.95 5.46 84.65 0.46 4.42 16 18 N -0.90 -54.86 13.19 21.44 0.28 -54.58 16 19 Si 0.99 42.25 29.54 68.60 2.03 44.28 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 23 H 0.10 2.08 4.20 -2.39 -0.01 2.07 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.85 6.95 -2.39 -0.02 1.83 16 26 H 0.11 1.98 5.73 -2.39 -0.01 1.96 16 27 H 0.10 1.80 8.05 -2.38 -0.02 1.78 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.27 7.85 -2.39 -0.02 1.25 16 30 H 0.06 1.18 7.90 -2.39 -0.02 1.16 16 31 H 0.08 1.41 5.67 -2.39 -0.01 1.40 16 32 H 0.07 1.35 7.77 -2.39 -0.02 1.33 16 33 H 0.04 1.15 7.19 -2.39 -0.02 1.14 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.02 7.79 -2.39 -0.02 2.00 16 36 H 0.10 2.53 7.28 -2.39 -0.02 2.51 16 37 H 0.30 16.39 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -76.75 306.10 1.57 -75.19 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.05 Total: 21.39 kcal Atomic # 6 Polarization: -66.26 SS G_CDS: 4.38 Total: -61.88 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -1.30 Total: -97.86 kcal Atomic # 8 Polarization: -128.58 SS G_CDS: -4.31 Total: -132.89 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 152.05 SS G_CDS: -0.28 Total: 151.77 kcal Total: -76.75 1.57 -75.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397836109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.765 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds