Wall clock time and date at job start Mon Mar 30 2020 04:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08996 * 110.43608 * 56.08697 * 3 2 1 5 5 C 1.54888 * 110.48695 * 293.54299 * 3 2 1 6 6 C 1.54886 * 102.74881 * 203.38439 * 5 3 2 7 7 C 1.54265 * 104.19720 * 37.93956 * 6 5 3 8 8 C 1.53868 * 106.60065 * 336.39207 * 7 6 5 9 9 H 1.08999 * 110.03646 * 240.71456 * 8 7 6 10 10 N 1.46500 * 110.03419 * 119.28079 * 8 7 6 11 11 S 1.65604 * 119.99828 * 97.83392 * 10 8 7 12 12 O 1.42097 * 104.27573 * 181.07316 * 11 10 8 13 13 O 1.42098 * 104.27739 * 308.93187 * 11 10 8 14 14 C 1.81399 * 104.44927 * 65.00199 * 11 10 8 15 15 C 1.50701 * 109.47443 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99571 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00519 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99608 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47318 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47168 * 120.00284 * 19 17 15 22 22 H 1.48499 * 109.46831 * 239.99928 * 19 17 15 23 23 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09003 * 110.75769 * 321.69667 * 5 3 2 29 29 H 1.09001 * 110.75413 * 84.88207 * 5 3 2 30 30 H 1.08996 * 110.49010 * 156.62516 * 6 5 3 31 31 H 1.09009 * 110.48223 * 279.26345 * 6 5 3 32 32 H 1.08994 * 110.03159 * 95.67799 * 7 6 5 33 33 H 1.09003 * 110.03487 * 217.10693 * 7 6 5 34 34 H 0.97004 * 120.00258 * 277.83633 * 10 8 7 35 35 H 1.09004 * 109.47070 * 300.00122 * 14 11 10 36 36 H 1.09001 * 109.46925 * 60.00206 * 14 11 10 37 37 H 0.96994 * 119.99565 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6294 1.9913 0.8476 5 6 1.6741 2.1468 -1.3301 6 6 2.7273 3.2791 -1.4183 7 6 4.0190 2.6378 -0.8707 8 6 3.5820 1.4701 0.0310 9 1 3.9321 1.6340 1.0502 10 7 4.1169 0.2085 -0.4871 11 16 5.5032 -0.4293 0.1562 12 8 5.7257 -1.6142 -0.5960 13 8 6.4322 0.6454 0.1220 14 6 5.0626 -0.8355 1.8683 15 6 6.2576 -1.4318 2.5667 16 1 7.1891 -1.5537 2.0339 17 6 6.1620 -1.8206 3.8860 18 7 5.0278 -1.6716 4.5349 19 14 7.6434 -2.5589 4.7518 20 1 8.7893 -2.6176 3.8091 21 1 8.0060 -1.7154 5.9189 22 1 7.3128 -3.9303 5.2159 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7738 1.4603 -2.1709 29 1 0.6650 2.5566 -1.2855 30 1 2.8656 3.5918 -2.4532 31 1 2.4297 4.1258 -0.7995 32 1 4.6291 2.2659 -1.6937 33 1 4.5812 3.3685 -0.2891 34 1 3.6591 -0.2532 -1.2069 35 1 4.7522 0.0707 2.3884 36 1 4.2439 -1.5551 1.8718 37 1 4.9607 -1.9448 5.4632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:03 Heat of formation + Delta-G solvation = -103.565681 kcal Electronic energy + Delta-G solvation = -18710.899870 eV Core-core repulsion = 15807.083633 eV Total energy + Delta-G solvation = -2903.816238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01998 -36.05668 -34.94066 -33.34538 -33.18174 -32.87801 -29.01425 -27.51781 -27.01100 -23.52116 -22.75046 -20.41429 -19.63935 -18.66272 -17.25959 -16.43585 -15.87397 -15.40314 -15.05911 -14.65120 -14.40538 -14.20812 -14.01363 -13.04144 -12.98105 -12.53676 -12.29710 -12.08594 -11.90246 -11.41406 -11.28516 -11.21386 -11.09228 -11.00647 -10.93207 -10.92302 -10.64817 -10.57846 -10.51141 -10.40788 -10.23508 -9.79194 -9.42837 -8.74019 -8.70434 -6.33366 -4.43472 1.38890 3.19838 3.27013 3.34195 3.66823 4.24387 4.55348 4.65731 4.80748 4.85348 5.01646 5.22566 5.30791 5.33137 5.39690 5.52980 5.61184 5.64500 5.71815 5.78304 5.83632 5.92075 5.99008 6.10259 6.14115 6.18996 6.37217 6.39513 6.52140 6.62834 6.67811 6.82876 7.45477 7.51972 7.75869 8.58888 9.24216 10.78409 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.006333 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.701839 B = 4419.970327 C = 4895.876672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.097 4.097 4 H 0.083 0.917 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.137 4.137 8 C 0.155 3.845 9 H 0.088 0.912 10 N -1.123 6.123 11 S 2.581 3.419 12 O -0.985 6.985 13 O -0.981 6.981 14 C -0.420 4.420 15 C -0.533 4.533 16 H 0.069 0.931 17 C 0.076 3.924 18 N -0.878 5.878 19 Si 0.904 3.096 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 7.125 -8.209 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.117 4.117 4 H 0.102 0.898 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.177 4.177 8 C 0.047 3.953 9 H 0.106 0.894 10 N -0.879 5.879 11 S 2.681 3.319 12 O -0.975 6.975 13 O -0.971 6.971 14 C -0.556 4.556 15 C -0.572 4.572 16 H 0.087 0.913 17 C -0.130 4.130 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.241 0.759 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.475 7.107 -8.413 13.896 hybrid contribution -0.023 -0.567 0.766 0.953 sum -8.498 6.540 -7.647 13.171 Atomic orbital electron populations 1.21784 0.96193 1.01402 1.01424 1.21522 0.95207 0.95920 1.02884 1.22303 0.94355 0.96712 0.98348 0.89827 1.22568 0.98338 0.97327 0.97359 1.22355 0.95360 0.97829 1.00663 1.22666 0.97405 0.97527 1.00087 1.21288 0.93464 0.83219 0.97320 0.89373 1.56022 1.47675 1.33367 1.50795 1.05870 0.73290 0.73512 0.79203 1.93479 1.84155 1.49070 1.70817 1.93477 1.60576 1.55145 1.87886 1.27729 1.06848 1.06775 1.14206 1.20374 0.95202 1.44083 0.97587 0.91288 1.24925 0.96654 0.94565 0.96883 1.69961 1.25007 1.45583 1.10914 0.86327 0.82189 0.78916 0.79590 1.18998 1.20354 1.20351 0.92887 0.93002 0.92948 0.91793 0.90962 0.91538 0.91766 0.91972 0.91742 0.90768 0.91069 0.75899 0.89969 0.89686 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.76 37.16 0.36 -1.18 16 2 C -0.12 -1.41 4.63 -26.73 -0.12 -1.53 16 3 C -0.10 -1.13 2.85 -88.96 -0.25 -1.39 16 4 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.12 -1.19 5.51 -24.74 -0.14 -1.32 16 6 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 7 C -0.14 -1.82 6.59 -25.62 -0.17 -1.98 16 8 C 0.16 2.21 3.21 -66.81 -0.21 2.00 16 9 H 0.09 1.33 7.22 -51.93 -0.38 0.95 16 10 N -1.12 -17.87 4.45 -3.94 -0.02 -17.88 16 11 S 2.58 54.63 5.30 -107.50 -0.57 54.06 16 12 O -0.98 -23.43 18.08 -57.54 -1.04 -24.47 16 13 O -0.98 -23.10 17.82 -57.54 -1.03 -24.13 16 14 C -0.42 -10.02 5.73 36.01 0.21 -9.81 16 15 C -0.53 -14.73 9.13 -34.44 -0.31 -15.04 16 16 H 0.07 1.89 7.71 -52.48 -0.40 1.49 16 17 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 18 N -0.88 -24.65 13.29 55.43 0.74 -23.92 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.66 8.02 -51.93 -0.42 0.25 16 29 H 0.06 0.57 8.00 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.41 5.67 7.06 -34.47 -0.24 5.42 16 35 H 0.08 1.93 7.48 -51.92 -0.39 1.54 16 36 H 0.09 2.02 8.14 -51.92 -0.42 1.59 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -32.52 310.17 -9.06 -41.58 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.89 Total: 3.82 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -0.91 Total: -29.73 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.72 Total: -41.80 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -2.07 Total: -48.59 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.57 Total: 54.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.52 -9.06 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.983 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds