Wall clock time and date at job start Mon Mar 30 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08996 * 110.43608 * 56.08697 * 3 2 1 5 5 C 1.54888 * 110.48695 * 293.54299 * 3 2 1 6 6 C 1.54886 * 102.74881 * 203.38439 * 5 3 2 7 7 C 1.54265 * 104.19720 * 37.93956 * 6 5 3 8 8 C 1.53868 * 106.60065 * 336.39207 * 7 6 5 9 9 H 1.08999 * 110.03646 * 240.71456 * 8 7 6 10 10 N 1.46500 * 110.03419 * 119.28079 * 8 7 6 11 11 S 1.65604 * 119.99828 * 97.83392 * 10 8 7 12 12 O 1.42097 * 104.27573 * 181.07316 * 11 10 8 13 13 O 1.42098 * 104.27739 * 308.93187 * 11 10 8 14 14 C 1.81399 * 104.44927 * 65.00199 * 11 10 8 15 15 C 1.50701 * 109.47443 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99571 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00519 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99608 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47318 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47168 * 120.00284 * 19 17 15 22 22 H 1.48499 * 109.46831 * 239.99928 * 19 17 15 23 23 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09003 * 110.75769 * 321.69667 * 5 3 2 29 29 H 1.09001 * 110.75413 * 84.88207 * 5 3 2 30 30 H 1.08996 * 110.49010 * 156.62516 * 6 5 3 31 31 H 1.09009 * 110.48223 * 279.26345 * 6 5 3 32 32 H 1.08994 * 110.03159 * 95.67799 * 7 6 5 33 33 H 1.09003 * 110.03487 * 217.10693 * 7 6 5 34 34 H 0.97004 * 120.00258 * 277.83633 * 10 8 7 35 35 H 1.09004 * 109.47070 * 300.00122 * 14 11 10 36 36 H 1.09001 * 109.46925 * 60.00206 * 14 11 10 37 37 H 0.96994 * 119.99565 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6294 1.9913 0.8476 5 6 1.6741 2.1468 -1.3301 6 6 2.7273 3.2791 -1.4183 7 6 4.0190 2.6378 -0.8707 8 6 3.5820 1.4701 0.0310 9 1 3.9321 1.6340 1.0502 10 7 4.1169 0.2085 -0.4871 11 16 5.5032 -0.4293 0.1562 12 8 5.7257 -1.6142 -0.5960 13 8 6.4322 0.6454 0.1220 14 6 5.0626 -0.8355 1.8683 15 6 6.2576 -1.4318 2.5667 16 1 7.1891 -1.5537 2.0339 17 6 6.1620 -1.8206 3.8860 18 7 5.0278 -1.6716 4.5349 19 14 7.6434 -2.5589 4.7518 20 1 8.7893 -2.6176 3.8091 21 1 8.0060 -1.7154 5.9189 22 1 7.3128 -3.9303 5.2159 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7738 1.4603 -2.1709 29 1 0.6650 2.5566 -1.2855 30 1 2.8656 3.5918 -2.4532 31 1 2.4297 4.1258 -0.7995 32 1 4.6291 2.2659 -1.6937 33 1 4.5812 3.3685 -0.2891 34 1 3.6591 -0.2532 -1.2069 35 1 4.7522 0.0707 2.3884 36 1 4.2439 -1.5551 1.8718 37 1 4.9607 -1.9448 5.4632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:02 Heat of formation + Delta-G solvation = -126.093957 kcal Electronic energy + Delta-G solvation = -18711.876770 eV Core-core repulsion = 15807.083633 eV Total energy + Delta-G solvation = -2904.793137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05653 -37.91762 -36.80982 -35.40798 -34.32218 -33.90930 -31.03074 -28.43575 -28.07876 -25.56742 -23.67125 -21.37052 -20.88972 -20.08560 -19.13214 -18.23379 -17.36508 -17.12761 -16.26203 -16.18998 -15.99327 -15.29219 -15.17089 -14.48659 -14.10900 -13.99919 -13.87072 -13.56870 -13.42944 -13.03831 -12.94184 -12.80537 -12.75526 -12.53946 -12.36879 -12.21426 -11.83707 -11.77003 -11.68632 -11.47970 -11.33492 -11.22951 -11.08915 -10.78623 -10.20298 -8.41729 -6.59484 -0.38119 1.36753 1.37449 1.51661 2.07773 2.31873 2.92000 3.02011 3.50865 3.58107 3.76013 3.90613 4.29020 4.32748 4.45405 4.54031 4.62529 4.66773 4.75825 4.77158 4.84413 4.86524 4.89912 5.03557 5.15758 5.21653 5.29266 5.32439 5.34127 5.39329 5.51054 5.57085 5.63930 5.73049 6.25878 6.51009 7.12061 8.70835 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.006333 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.701839 B = 4419.970327 C = 4895.876672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.092 4.092 4 H 0.092 0.908 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.141 4.141 8 C 0.141 3.859 9 H 0.074 0.926 10 N -1.104 6.104 11 S 2.619 3.381 12 O -1.009 7.009 13 O -1.003 7.003 14 C -0.430 4.430 15 C -0.567 4.567 16 H 0.061 0.939 17 C 0.027 3.973 18 N -0.906 5.906 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.267 1.267 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.420 0.580 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 7.824 -8.868 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.112 4.112 4 H 0.110 0.890 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.181 4.181 8 C 0.034 3.966 9 H 0.092 0.908 10 N -0.865 5.865 11 S 2.717 3.283 12 O -1.000 7.000 13 O -0.993 6.993 14 C -0.564 4.564 15 C -0.606 4.606 16 H 0.080 0.920 17 C -0.177 4.177 18 N -0.542 5.542 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.191 1.191 22 H -0.191 1.191 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.257 0.743 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.446 7.800 -9.063 15.238 hybrid contribution 0.227 -0.744 0.943 1.223 sum -9.220 7.055 -8.119 14.167 Atomic orbital electron populations 1.21749 0.94486 1.01752 1.02385 1.21548 0.96776 0.95911 1.01773 1.22297 0.91921 0.96908 1.00074 0.88966 1.22564 0.99334 0.96996 0.96022 1.22336 0.93530 0.98096 1.01486 1.22679 0.98974 0.97019 0.99418 1.21606 0.95608 0.82488 0.96900 0.90796 1.55511 1.46511 1.33929 1.50529 1.04494 0.73704 0.72594 0.77556 1.93433 1.85169 1.50628 1.70766 1.93443 1.62280 1.55751 1.87794 1.27768 1.05560 1.06248 1.16821 1.20782 0.96186 1.45042 0.98610 0.92036 1.25802 0.99522 0.94792 0.97557 1.70030 1.26631 1.46106 1.11465 0.85434 0.78744 0.78703 0.78638 1.18876 1.19104 1.19142 0.92685 0.91230 0.92993 0.91543 0.93507 0.91211 0.89576 0.90677 0.90450 0.91920 0.91520 0.74310 0.90292 0.90237 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.76 71.98 0.70 -1.99 16 2 C -0.12 -2.78 4.63 30.60 0.14 -2.64 16 3 C -0.09 -1.99 2.85 -9.72 -0.03 -2.01 16 4 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.11 -1.88 5.51 31.88 0.18 -1.70 16 6 C -0.12 -2.09 6.83 31.67 0.22 -1.87 16 7 C -0.14 -3.57 6.59 31.32 0.21 -3.37 16 8 C 0.14 3.95 3.21 45.72 0.15 4.09 16 9 H 0.07 2.27 7.22 -2.39 -0.02 2.25 16 10 N -1.10 -34.92 4.45 -166.38 -0.74 -35.66 16 11 S 2.62 112.58 5.30 -56.49 -0.30 112.28 16 12 O -1.01 -48.43 18.08 -127.65 -2.31 -50.74 16 13 O -1.00 -47.81 17.82 -127.65 -2.27 -50.08 16 14 C -0.43 -21.17 5.73 71.24 0.41 -20.76 16 15 C -0.57 -32.06 9.13 25.60 0.23 -31.82 16 16 H 0.06 3.46 7.71 -2.91 -0.02 3.44 16 17 C 0.03 1.48 5.46 84.65 0.46 1.94 16 18 N -0.91 -51.39 13.29 21.45 0.28 -51.10 16 19 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.04 7.38 -2.39 -0.02 1.02 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.45 6.43 -2.39 -0.02 1.43 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.16 8.02 -2.39 -0.02 1.14 16 29 H 0.09 1.14 8.00 -2.39 -0.02 1.12 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.06 1.72 7.92 -2.39 -0.02 1.70 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.42 11.34 7.06 -96.74 -0.68 10.65 16 35 H 0.08 3.86 7.48 -2.39 -0.02 3.84 16 36 H 0.08 3.92 8.14 -2.39 -0.02 3.90 16 37 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -69.19 310.17 -0.28 -69.47 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.36 Total: 20.96 kcal Atomic # 6 Polarization: -62.80 SS G_CDS: 2.67 Total: -60.13 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -0.45 Total: -86.76 kcal Atomic # 8 Polarization: -96.23 SS G_CDS: -4.58 Total: -100.81 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 112.58 SS G_CDS: -0.30 Total: 112.28 kcal Total: -69.19 -0.28 -69.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.624 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds