Wall clock time and date at job start Mon Mar 30 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.46933 * 2 1 4 4 C 1.36935 * 120.00232 * 264.15214 * 3 2 1 5 5 H 1.07997 * 119.99881 * 187.86222 * 4 3 2 6 6 C 1.38813 * 119.99835 * 7.87206 * 4 3 2 7 7 N 1.31613 * 120.00459 * 25.88741 * 6 4 3 8 8 Si 1.86801 * 119.99668 * 205.89541 * 6 4 3 9 9 H 1.48496 * 109.47475 * 84.98028 * 8 6 4 10 10 H 1.48499 * 109.47108 * 204.98448 * 8 6 4 11 11 H 1.48507 * 109.47238 * 324.98076 * 8 6 4 12 12 C 1.46507 * 119.99550 * 84.15174 * 3 2 1 13 13 C 1.52995 * 109.47310 * 269.99916 * 12 3 2 14 14 H 1.09003 * 109.55067 * 60.19333 * 13 12 3 15 15 C 1.53046 * 109.55132 * 180.52152 * 13 12 3 16 16 C 1.52586 * 109.97821 * 183.54122 * 15 13 12 17 17 C 1.52584 * 110.61523 * 289.95761 * 16 15 13 18 18 C 1.53031 * 109.98617 * 70.00423 * 17 16 15 19 19 S 1.81675 * 109.00006 * 296.35296 * 18 17 16 20 20 O 1.42104 * 108.66427 * 168.62571 * 19 18 17 21 21 O 1.42095 * 108.66149 * 299.97114 * 19 18 17 22 22 H 1.09003 * 109.47839 * 60.00005 * 1 2 3 23 23 H 1.09004 * 109.47254 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47448 * 299.99337 * 1 2 3 25 25 H 1.09003 * 109.47448 * 240.00663 * 2 1 3 26 26 H 1.08990 * 109.47482 * 119.99985 * 2 1 3 27 27 H 0.96996 * 120.00084 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46412 * 150.00269 * 12 3 2 29 29 H 1.08993 * 109.46931 * 30.00148 * 12 3 2 30 30 H 1.09008 * 109.42048 * 63.37123 * 15 13 12 31 31 H 1.08997 * 109.36043 * 303.68067 * 15 13 12 32 32 H 1.09006 * 109.24138 * 169.67585 * 16 15 13 33 33 H 1.09001 * 109.24412 * 50.23809 * 16 15 13 34 34 H 1.09003 * 109.38831 * 190.16860 * 17 16 15 35 35 H 1.09006 * 109.38788 * 309.95344 * 17 16 15 36 36 H 1.09000 * 109.55366 * 56.20860 * 18 17 16 37 37 H 1.09002 * 109.55270 * 176.50258 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3604 1.9866 -1.1797 5 1 2.8382 2.9550 -1.1710 6 6 2.0928 1.3554 -2.3867 7 7 1.1101 0.4839 -2.4701 8 14 3.1278 1.7429 -3.8928 9 1 4.3493 0.8986 -3.8847 10 1 2.3403 1.4624 -5.1201 11 1 3.5166 3.1760 -3.8709 12 6 2.1405 2.1149 1.2622 13 6 0.8301 2.8486 1.5547 14 1 0.0178 2.1263 1.6356 15 6 0.9603 3.6262 2.8665 16 6 -0.3690 4.2906 3.2127 17 6 -0.6670 5.4323 2.2452 18 6 -0.9914 4.8717 0.8587 19 16 0.4737 4.0160 0.2091 20 8 0.0950 3.2781 -0.9448 21 8 1.5426 4.9480 0.1206 22 1 -0.3635 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.9235 0.0426 -3.3135 28 1 2.9524 2.8381 1.1849 29 1 2.3531 1.4149 2.0702 30 1 1.7299 4.3907 2.7598 31 1 1.2414 2.9411 3.6662 32 1 -0.3203 4.6838 4.2282 33 1 -1.1671 3.5507 3.1519 34 1 -1.5188 6.0048 2.6124 35 1 0.2039 6.0841 2.1755 36 1 -1.8208 4.1685 0.9344 37 1 -1.2634 5.6881 0.1896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694394692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:20 Heat of formation + Delta-G solvation = -42.895510 kcal Electronic energy + Delta-G solvation = -19869.703168 eV Core-core repulsion = 16968.517787 eV Total energy + Delta-G solvation = -2901.185382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -37.33902 -36.22205 -35.57464 -34.63346 -32.46125 -30.71861 -29.25289 -27.69562 -24.81389 -23.43818 -21.56355 -20.81000 -20.13516 -17.87135 -16.86740 -16.04675 -15.60980 -15.00527 -14.73478 -14.43647 -13.85908 -13.50959 -13.42173 -13.16246 -12.82066 -12.44730 -11.95606 -11.72090 -11.53527 -11.36955 -11.03925 -10.99125 -10.86303 -10.80864 -10.76974 -10.63256 -10.60462 -10.26372 -9.96595 -9.66733 -9.58486 -9.29877 -9.13519 -8.25210 -6.91559 -5.73560 -2.95775 0.93943 3.47810 3.54160 3.57188 3.71547 4.48254 4.59155 4.61088 4.88754 4.89974 5.10997 5.26423 5.35023 5.46669 5.50069 5.60676 5.68949 5.87799 5.94135 5.97967 6.02573 6.12963 6.21558 6.32076 6.41716 6.58151 6.65522 6.92748 7.06817 7.17779 7.68727 7.81952 8.22892 8.36708 9.23973 9.85613 10.26571 11.30129 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.027362 B = 0.009281 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.054205 B = 3016.182387 C = 3405.262205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 N -0.593 5.593 4 C -0.251 4.251 5 H 0.079 0.921 6 C 0.024 3.976 7 N -0.862 5.862 8 Si 0.890 3.110 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.167 3.833 13 C -0.594 4.594 14 H 0.127 0.873 15 C -0.102 4.102 16 C -0.137 4.137 17 C -0.105 4.105 18 C -0.639 4.639 19 S 2.406 3.594 20 O -0.877 6.877 21 O -0.960 6.960 22 H 0.103 0.897 23 H 0.018 0.982 24 H 0.009 0.991 25 H 0.090 0.910 26 H 0.004 0.996 27 H 0.252 0.748 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 4.817 10.671 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 N -0.314 5.314 4 C -0.383 4.383 5 H 0.096 0.904 6 C -0.177 4.177 7 N -0.506 5.506 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.038 3.962 13 C -0.707 4.707 14 H 0.145 0.855 15 C -0.141 4.141 16 C -0.174 4.174 17 C -0.143 4.143 18 C -0.763 4.763 19 S 2.585 3.415 20 O -0.872 6.872 21 O -0.956 6.956 22 H 0.122 0.878 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.108 0.892 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.544 4.924 9.749 11.482 hybrid contribution -0.378 0.151 -0.044 0.409 sum -3.922 5.075 9.705 11.633 Atomic orbital electron populations 1.22445 0.99173 0.98250 1.01638 1.20848 0.92633 0.84049 0.98397 1.44562 1.74667 1.10731 1.01470 1.19312 1.31703 1.03690 0.83613 0.90363 1.24605 0.96872 0.99082 0.97133 1.70175 1.25468 1.30114 1.24885 0.86472 0.80450 0.78401 0.82744 1.21429 1.21679 1.20252 1.20594 0.91037 0.94743 0.89873 1.30391 1.11954 1.15577 1.12730 0.85515 1.21273 0.97367 0.99216 0.96208 1.21687 0.98326 0.97805 0.99627 1.21181 1.02793 0.98351 0.91979 1.30659 1.24363 1.13852 1.07429 1.10592 0.76661 0.76605 0.77646 1.93733 1.82160 1.68951 1.42383 1.93438 1.52414 1.63450 1.86341 0.87838 0.96248 0.97212 0.89201 0.97794 0.93731 0.91949 0.92553 0.90616 0.90525 0.90747 0.91221 0.90957 0.90432 0.86198 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.59 37.15 0.36 -3.18 16 2 C 0.17 3.90 5.64 -4.04 -0.02 3.87 16 3 N -0.59 -14.36 2.24 -173.24 -0.39 -14.75 16 4 C -0.25 -6.86 6.31 -15.06 -0.10 -6.95 16 5 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 6 C 0.02 0.68 4.85 -17.43 -0.08 0.59 16 7 N -0.86 -24.10 8.63 55.49 0.48 -23.62 16 8 Si 0.89 22.25 29.63 -169.99 -5.04 17.21 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.17 3.33 5.27 -4.04 -0.02 3.31 16 13 C -0.59 -10.35 2.58 -26.71 -0.07 -10.42 16 14 H 0.13 2.17 5.94 -51.93 -0.31 1.86 16 15 C -0.10 -1.36 5.01 -26.92 -0.13 -1.50 16 16 C -0.14 -1.56 5.63 -27.16 -0.15 -1.72 16 17 C -0.10 -1.30 5.73 -26.93 -0.15 -1.46 16 18 C -0.64 -9.46 6.35 37.17 0.24 -9.23 16 19 S 2.41 48.18 3.74 -107.50 -0.40 47.78 16 20 O -0.88 -21.80 15.37 -57.81 -0.89 -22.68 16 21 O -0.96 -21.62 17.85 -57.81 -1.03 -22.65 16 22 H 0.10 2.72 6.33 -51.93 -0.33 2.39 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.01 0.19 5.98 -51.93 -0.31 -0.12 16 25 H 0.09 2.34 5.85 -51.93 -0.30 2.04 16 26 H 0.00 0.08 7.98 -51.93 -0.41 -0.33 16 27 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.06 1.25 8.03 -51.93 -0.42 0.83 16 29 H 0.06 1.00 7.95 -51.93 -0.41 0.58 16 30 H 0.08 1.02 8.01 -51.92 -0.42 0.60 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 36 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -31.80 292.89 -8.83 -40.63 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.83 Total: 0.35 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -0.14 Total: -26.68 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.09 Total: -38.37 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.92 Total: -45.34 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.04 Total: 17.21 kcal Atomic # 16 Polarization: 48.18 SS G_CDS: -0.40 Total: 47.78 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.80 -8.83 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694394692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds