Wall clock time and date at job start Mon Mar 30 2020 04:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.67539 * 2 1 4 4 O 1.43791 * 110.75113 * 236.77006 * 2 1 3 5 5 C 1.35865 * 109.22640 * 213.79960 * 4 2 1 6 6 C 1.38850 * 111.30955 * 19.35951 * 5 4 2 7 7 C 1.37685 * 120.87380 * 178.95963 * 6 5 4 8 8 C 1.38654 * 120.32800 * 0.64528 * 7 6 5 9 9 C 1.37774 * 119.98643 * 359.48478 * 8 7 6 10 10 C 1.39589 * 120.17344 * 0.31518 * 9 8 7 11 11 C 1.47436 * 120.05707 * 179.73055 * 10 9 8 12 12 O 1.21620 * 119.99763 * 180.02562 * 11 10 9 13 13 N 1.34768 * 120.00046 * 0.02668 * 11 10 9 14 14 C 1.36905 * 120.00137 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99873 * 359.97438 * 14 13 11 16 16 C 1.39021 * 120.00205 * 179.97438 * 14 13 11 17 17 N 1.31377 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00167 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47295 * 59.99869 * 18 16 14 20 20 H 1.48495 * 109.47141 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46844 * 300.00116 * 18 16 14 22 22 C 1.51676 * 106.99215 * 358.54821 * 6 5 4 23 23 H 1.08997 * 110.94496 * 226.71888 * 22 6 5 24 24 C 1.53008 * 110.93941 * 103.03235 * 22 6 5 25 25 H 1.09001 * 109.47286 * 181.77695 * 1 2 3 26 26 H 1.08999 * 109.46929 * 301.77725 * 1 2 3 27 27 H 1.08996 * 109.46674 * 61.77349 * 1 2 3 28 28 H 1.08002 * 119.83328 * 180.36197 * 7 6 5 29 29 H 1.08003 * 120.00821 * 179.73451 * 8 7 6 30 30 H 1.07999 * 119.91327 * 180.02562 * 9 8 7 31 31 H 0.97002 * 120.00469 * 359.97438 * 13 11 10 32 32 H 0.97003 * 120.00806 * 180.02562 * 17 16 14 33 33 H 1.09000 * 109.47094 * 61.45826 * 24 22 6 34 34 H 1.09004 * 109.46649 * 181.45444 * 24 22 6 35 35 H 1.08996 * 109.47429 * 301.45517 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0395 -0.7369 -1.1248 5 6 3.1949 -1.3561 -0.7677 6 6 3.3050 -1.4621 0.6124 7 6 4.3930 -2.0779 1.1892 8 6 5.4077 -2.5927 0.3967 9 6 5.3248 -2.4988 -0.9753 10 6 4.2243 -1.8802 -1.5710 11 6 4.1411 -1.7758 -3.0393 12 8 3.1820 -1.2363 -3.5571 13 7 5.1278 -2.2783 -3.8076 14 6 5.0504 -2.1818 -5.1710 15 1 4.1983 -1.7034 -5.6309 16 6 6.0684 -2.6996 -5.9635 17 7 7.1047 -3.2820 -5.4041 18 14 5.9630 -2.5673 -7.8239 19 1 5.8962 -1.1365 -8.2154 20 1 7.1643 -3.1922 -8.4334 21 1 4.7444 -3.2687 -8.3017 22 6 2.0783 -0.7972 1.2072 23 1 2.3544 -0.1286 2.0226 24 6 1.0646 -1.8418 1.6787 25 1 -0.3634 -1.0272 0.0319 26 1 -0.3633 0.5412 0.8736 27 1 -0.3632 0.4860 -0.9054 28 1 4.4586 -2.1562 2.2643 29 1 6.2609 -3.0709 0.8548 30 1 6.1156 -2.9006 -1.5914 31 1 5.8930 -2.7083 -3.3945 32 1 7.8153 -3.6430 -5.9570 33 1 1.5139 -2.4589 2.4567 34 1 0.1835 -1.3388 2.0774 35 1 0.7741 -2.4716 0.8379 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701321307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:16 Heat of formation + Delta-G solvation = -45.968421 kcal Electronic energy + Delta-G solvation = -19369.418836 eV Core-core repulsion = 16332.656252 eV Total energy + Delta-G solvation = -3036.762584 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08440 -38.27136 -36.74057 -34.24087 -33.83922 -31.55414 -30.72876 -29.95351 -27.95243 -25.37943 -25.21330 -22.69281 -21.49198 -20.56881 -19.18703 -18.07753 -16.93694 -16.44978 -16.30189 -15.30719 -14.76973 -14.43846 -14.18389 -13.88099 -13.60010 -13.31895 -13.19993 -12.73442 -12.53196 -12.43141 -11.99909 -11.78471 -11.67222 -11.57853 -11.28496 -11.07707 -10.89201 -10.66533 -10.44408 -10.41259 -10.19797 -9.54178 -8.51131 -8.35147 -7.99285 -7.77367 -6.48088 -3.81039 1.37352 1.67574 3.20816 3.24745 3.29778 3.52624 3.70694 4.14731 4.41546 4.49295 4.57174 4.88114 4.93012 5.18046 5.20521 5.25917 5.36509 5.41994 5.47013 5.51589 5.58388 5.72344 5.77120 5.83430 5.93718 6.02910 6.16060 6.23550 6.33541 6.59682 6.71908 6.79181 6.97626 7.50227 7.58446 8.04137 8.60007 9.14818 9.51103 10.08193 10.69361 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.005304 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.110642 B = 5277.471286 C = 6060.667193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.083 0.917 4 O -0.269 6.269 5 C 0.155 3.845 6 C -0.187 4.187 7 C -0.068 4.068 8 C -0.156 4.156 9 C -0.069 4.069 10 C -0.119 4.119 11 C 0.471 3.529 12 O -0.583 6.583 13 N -0.550 5.550 14 C -0.292 4.292 15 H 0.106 0.894 16 C 0.022 3.978 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.074 4.074 23 H 0.091 0.909 24 C -0.138 4.138 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.392 0.608 32 H 0.275 0.725 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 2.414 15.288 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.101 0.899 4 O -0.181 6.181 5 C 0.107 3.893 6 C -0.188 4.188 7 C -0.087 4.087 8 C -0.174 4.174 9 C -0.089 4.089 10 C -0.123 4.123 11 C 0.259 3.741 12 O -0.468 6.468 13 N -0.185 5.185 14 C -0.422 4.422 15 H 0.124 0.876 16 C -0.180 4.180 17 N -0.535 5.535 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.092 4.092 23 H 0.109 0.891 24 C -0.195 4.195 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.227 0.773 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.382 2.691 14.584 16.145 hybrid contribution 0.669 -0.227 -0.504 0.868 sum -5.713 2.464 14.081 15.394 Atomic orbital electron populations 1.21920 0.92484 1.03528 1.02709 1.23442 0.95822 0.95443 0.83873 0.89945 1.87071 1.33569 1.61509 1.35952 1.19392 0.86153 0.92220 0.91508 1.20670 0.97933 1.06681 0.93487 1.20238 0.92272 0.96874 0.99327 1.20865 0.99666 1.03508 0.93358 1.21210 0.96299 0.96282 0.95076 1.19739 0.93445 1.04287 0.94838 1.17597 0.85484 0.85869 0.85195 1.90649 1.33584 1.48616 1.73951 1.41863 1.19677 1.50176 1.06794 1.19765 1.06556 1.34923 0.80932 0.87631 1.25334 0.95093 0.96524 1.01095 1.69584 1.09275 1.37633 1.37007 0.85855 0.77688 0.78812 0.81553 1.19746 1.20845 1.19745 1.21344 0.92836 0.96976 0.98039 0.89052 1.21792 0.97984 0.98318 1.01399 0.91064 0.90772 0.91322 0.86287 0.85527 0.84714 0.77281 0.91550 0.92281 0.91872 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.57 37.16 0.32 -1.34 16 2 C 0.07 1.00 4.17 -25.83 -0.11 0.89 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 4 O -0.27 -5.45 9.84 -34.90 -0.34 -5.79 16 5 C 0.16 3.11 6.73 -38.43 -0.26 2.85 16 6 C -0.19 -2.93 5.63 -104.12 -0.59 -3.51 16 7 C -0.07 -0.95 10.02 -39.63 -0.40 -1.35 16 8 C -0.16 -2.28 10.05 -39.60 -0.40 -2.67 16 9 C -0.07 -1.25 9.52 -39.25 -0.37 -1.62 16 10 C -0.12 -2.59 5.89 -104.72 -0.62 -3.21 16 11 C 0.47 12.49 7.71 -12.52 -0.10 12.40 16 12 O -0.58 -17.48 15.44 -10.33 -0.16 -17.64 16 13 N -0.55 -14.76 5.23 -11.95 -0.06 -14.82 16 14 C -0.29 -8.37 9.68 -15.00 -0.15 -8.52 16 15 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 16 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 17 N -0.89 -24.31 13.05 55.50 0.72 -23.58 16 18 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 C -0.07 -0.91 3.64 -90.39 -0.33 -1.24 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 24 C -0.14 -1.45 7.96 37.16 0.30 -1.16 16 25 H 0.07 0.80 6.32 -51.93 -0.33 0.47 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.14 2.36 6.37 -52.49 -0.33 2.02 16 31 H 0.39 9.88 5.90 -40.82 -0.24 9.64 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.52 7.27 -51.93 -0.38 0.14 16 35 H 0.06 0.77 7.50 -51.93 -0.39 0.38 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -33.31 295.07 -7.34 -40.65 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.14 Total: 8.60 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.79 Total: -7.98 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.66 Total: -38.40 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.50 Total: -23.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.31 -7.34 -40.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701321307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.316 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds