Wall clock time and date at job start Mon Mar 30 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.67539 * 2 1 4 4 O 1.43791 * 110.75113 * 236.77006 * 2 1 3 5 5 C 1.35865 * 109.22640 * 213.79960 * 4 2 1 6 6 C 1.38850 * 111.30955 * 19.35951 * 5 4 2 7 7 C 1.37685 * 120.87380 * 178.95963 * 6 5 4 8 8 C 1.38654 * 120.32800 * 0.64528 * 7 6 5 9 9 C 1.37774 * 119.98643 * 359.48478 * 8 7 6 10 10 C 1.39589 * 120.17344 * 0.31518 * 9 8 7 11 11 C 1.47436 * 120.05707 * 179.73055 * 10 9 8 12 12 O 1.21620 * 119.99763 * 180.02562 * 11 10 9 13 13 N 1.34768 * 120.00046 * 0.02668 * 11 10 9 14 14 C 1.36905 * 120.00137 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99873 * 359.97438 * 14 13 11 16 16 C 1.39021 * 120.00205 * 179.97438 * 14 13 11 17 17 N 1.31377 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00167 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47295 * 59.99869 * 18 16 14 20 20 H 1.48495 * 109.47141 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46844 * 300.00116 * 18 16 14 22 22 C 1.51676 * 106.99215 * 358.54821 * 6 5 4 23 23 H 1.08997 * 110.94496 * 226.71888 * 22 6 5 24 24 C 1.53008 * 110.93941 * 103.03235 * 22 6 5 25 25 H 1.09001 * 109.47286 * 181.77695 * 1 2 3 26 26 H 1.08999 * 109.46929 * 301.77725 * 1 2 3 27 27 H 1.08996 * 109.46674 * 61.77349 * 1 2 3 28 28 H 1.08002 * 119.83328 * 180.36197 * 7 6 5 29 29 H 1.08003 * 120.00821 * 179.73451 * 8 7 6 30 30 H 1.07999 * 119.91327 * 180.02562 * 9 8 7 31 31 H 0.97002 * 120.00469 * 359.97438 * 13 11 10 32 32 H 0.97003 * 120.00806 * 180.02562 * 17 16 14 33 33 H 1.09000 * 109.47094 * 61.45826 * 24 22 6 34 34 H 1.09004 * 109.46649 * 181.45444 * 24 22 6 35 35 H 1.08996 * 109.47429 * 301.45517 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0395 -0.7369 -1.1248 5 6 3.1949 -1.3561 -0.7677 6 6 3.3050 -1.4621 0.6124 7 6 4.3930 -2.0779 1.1892 8 6 5.4077 -2.5927 0.3967 9 6 5.3248 -2.4988 -0.9753 10 6 4.2243 -1.8802 -1.5710 11 6 4.1411 -1.7758 -3.0393 12 8 3.1820 -1.2363 -3.5571 13 7 5.1278 -2.2783 -3.8076 14 6 5.0504 -2.1818 -5.1710 15 1 4.1983 -1.7034 -5.6309 16 6 6.0684 -2.6996 -5.9635 17 7 7.1047 -3.2820 -5.4041 18 14 5.9630 -2.5673 -7.8239 19 1 5.8962 -1.1365 -8.2154 20 1 7.1643 -3.1922 -8.4334 21 1 4.7444 -3.2687 -8.3017 22 6 2.0783 -0.7972 1.2072 23 1 2.3544 -0.1286 2.0226 24 6 1.0646 -1.8418 1.6787 25 1 -0.3634 -1.0272 0.0319 26 1 -0.3633 0.5412 0.8736 27 1 -0.3632 0.4860 -0.9054 28 1 4.4586 -2.1562 2.2643 29 1 6.2609 -3.0709 0.8548 30 1 6.1156 -2.9006 -1.5914 31 1 5.8930 -2.7083 -3.3945 32 1 7.8153 -3.6430 -5.9570 33 1 1.5139 -2.4589 2.4567 34 1 0.1835 -1.3388 2.0774 35 1 0.7741 -2.4716 0.8379 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701321307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:15 Heat of formation + Delta-G solvation = -68.052219 kcal Electronic energy + Delta-G solvation = -19370.376462 eV Core-core repulsion = 16332.656252 eV Total energy + Delta-G solvation = -3037.720210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.35910 -40.14666 -38.19800 -36.10874 -35.23480 -33.49829 -32.03179 -31.36678 -28.98920 -27.22913 -26.40015 -24.26431 -22.79419 -21.78183 -20.88445 -20.08123 -18.22069 -18.00383 -17.69154 -16.85659 -16.43472 -15.87371 -15.80330 -15.45978 -15.09845 -14.80431 -14.57812 -14.12347 -13.72657 -13.55167 -13.38378 -13.23204 -12.95537 -12.87933 -12.66992 -12.52329 -12.43894 -12.13993 -11.89908 -11.71372 -11.59954 -11.52092 -10.44255 -10.13298 -9.85191 -9.11346 -8.55716 -6.01135 -0.02590 0.36956 1.38205 1.39943 1.50495 2.06891 2.25717 2.35398 2.79859 3.09750 3.27311 3.36630 3.54637 3.93247 3.97893 4.15676 4.21468 4.24376 4.38455 4.49289 4.55050 4.60546 4.80327 4.84027 4.90503 4.98289 5.12986 5.19853 5.29683 5.32231 5.38347 5.41131 5.46833 5.77843 5.91280 6.29806 6.51302 7.02356 7.43255 8.02038 8.61867 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.005304 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.110642 B = 5277.471286 C = 6060.667193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 H 0.086 0.914 4 O -0.316 6.316 5 C 0.127 3.873 6 C -0.181 4.181 7 C -0.046 4.046 8 C -0.143 4.143 9 C -0.075 4.075 10 C -0.168 4.168 11 C 0.465 3.535 12 O -0.632 6.632 13 N -0.557 5.557 14 C -0.340 4.340 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.271 1.271 20 H -0.263 1.263 21 H -0.271 1.271 22 C -0.063 4.063 23 H 0.129 0.871 24 C -0.135 4.135 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.130 0.870 31 H 0.397 0.603 32 H 0.283 0.717 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 2.165 18.710 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.002 4.002 3 H 0.103 0.897 4 O -0.229 6.229 5 C 0.079 3.921 6 C -0.182 4.182 7 C -0.064 4.064 8 C -0.161 4.161 9 C -0.094 4.094 10 C -0.172 4.172 11 C 0.254 3.746 12 O -0.521 6.521 13 N -0.193 5.193 14 C -0.469 4.469 15 H 0.096 0.904 16 C -0.210 4.210 17 N -0.552 5.552 18 Si 0.822 3.178 19 H -0.196 1.196 20 H -0.187 1.187 21 H -0.196 1.196 22 C -0.081 4.081 23 H 0.147 0.853 24 C -0.192 4.192 25 H 0.087 0.913 26 H 0.133 0.867 27 H 0.072 0.928 28 H 0.189 0.811 29 H 0.187 0.813 30 H 0.147 0.853 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.958 2.427 18.044 19.156 hybrid contribution 0.504 -0.121 -1.375 1.470 sum -5.454 2.306 16.668 17.689 Atomic orbital electron populations 1.21966 0.90472 1.03818 1.03865 1.23905 0.97528 0.95385 0.83364 0.89660 1.87017 1.34020 1.62350 1.39539 1.19766 0.85985 0.92810 0.93515 1.21191 0.99536 1.05975 0.91517 1.20865 0.90230 0.93477 1.01804 1.21340 1.01064 1.02217 0.91493 1.21279 0.94962 0.96113 0.97047 1.19588 0.96753 1.08880 0.91940 1.18499 0.84306 0.84163 0.87584 1.90576 1.35298 1.50487 1.75713 1.41844 1.20134 1.50834 1.06444 1.19712 1.07192 1.37752 0.82254 0.90388 1.26163 0.94104 0.95207 1.05501 1.69637 1.09506 1.37333 1.38722 0.84902 0.78292 0.78847 0.75736 1.19586 1.18665 1.19633 1.21462 0.91471 0.97389 0.97770 0.85347 1.21805 0.98698 0.97844 1.00804 0.91349 0.86718 0.92816 0.81060 0.81319 0.85251 0.76691 0.90744 0.90477 0.89033 0.94704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.57 71.98 0.62 -2.41 16 2 C 0.05 1.47 4.17 31.18 0.13 1.60 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 O -0.32 -13.43 9.84 -77.12 -0.76 -14.19 16 5 C 0.13 5.22 6.73 23.02 0.15 5.37 16 6 C -0.18 -5.22 5.63 -19.54 -0.11 -5.33 16 7 C -0.05 -1.05 10.02 22.24 0.22 -0.82 16 8 C -0.14 -3.69 10.05 22.26 0.22 -3.46 16 9 C -0.07 -2.71 9.52 22.49 0.21 -2.49 16 10 C -0.17 -7.67 5.89 -19.93 -0.12 -7.79 16 11 C 0.46 26.64 7.71 86.67 0.67 27.31 16 12 O -0.63 -41.28 15.44 10.81 0.17 -41.11 16 13 N -0.56 -32.04 5.23 -309.99 -1.62 -33.66 16 14 C -0.34 -20.76 9.68 84.09 0.81 -19.95 16 15 H 0.08 5.07 7.15 -2.91 -0.02 5.05 16 16 C -0.01 -0.49 5.50 84.95 0.47 -0.03 16 17 N -0.91 -50.43 13.05 21.68 0.28 -50.15 16 18 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C -0.06 -1.34 3.64 -10.64 -0.04 -1.37 16 23 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 24 C -0.13 -2.33 7.96 71.98 0.57 -1.75 16 25 H 0.07 1.47 6.32 -2.39 -0.02 1.45 16 26 H 0.11 1.44 8.08 -2.39 -0.02 1.42 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.13 4.67 6.37 -2.91 -0.02 4.65 16 31 H 0.40 21.31 5.90 -92.71 -0.55 20.76 16 32 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.08 7.27 -2.39 -0.02 1.06 16 35 H 0.03 0.80 7.50 -2.39 -0.02 0.78 16 Total: -1.00 -80.44 295.07 4.49 -75.96 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.57 Total: 28.04 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 3.82 Total: -11.14 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.34 Total: -83.81 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.59 Total: -55.30 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -80.44 4.49 -75.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701321307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.904 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds