Wall clock time and date at job start Mon Mar 30 2020 04:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.09002 * 109.18439 * 304.56072 * 3 2 1 5 5 C 1.47086 * 109.32991 * 64.13236 * 3 2 1 6 6 C 1.52567 * 114.32564 * 183.06334 * 5 3 2 7 7 C 1.50883 * 109.36010 * 274.98477 * 6 5 3 8 8 C 1.53948 * 110.09440 * 91.88407 * 7 6 5 9 9 N 1.47606 * 112.14336 * 319.43704 * 8 7 6 10 10 S 1.65604 * 118.64486 * 137.87051 * 9 8 7 11 11 O 1.42099 * 106.40005 * 23.53666 * 10 9 8 12 12 O 1.42096 * 106.40126 * 156.46400 * 10 9 8 13 13 C 1.76203 * 107.21474 * 270.00038 * 10 9 8 14 14 H 1.08003 * 120.00408 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99837 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99578 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99886 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47077 * 90.00545 * 17 15 13 19 19 H 1.48505 * 109.46828 * 210.00000 * 17 15 13 20 20 H 1.48496 * 109.47274 * 330.00112 * 17 15 13 21 21 C 1.44575 * 122.71046 * 317.87157 * 9 8 7 22 22 H 1.09000 * 109.47008 * 300.00301 * 1 2 3 23 23 H 1.09002 * 109.46827 * 59.99990 * 1 2 3 24 24 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47008 * 239.99698 * 2 1 3 26 26 H 1.09002 * 109.46827 * 120.00010 * 2 1 3 27 27 H 1.09005 * 108.51513 * 304.31174 * 5 3 2 28 28 H 1.08992 * 108.51951 * 61.96321 * 5 3 2 29 29 H 1.09004 * 109.49114 * 34.94973 * 6 5 3 30 30 H 1.08998 * 109.49466 * 154.99781 * 6 5 3 31 31 H 1.08995 * 109.36631 * 212.07648 * 7 6 5 32 32 H 1.09000 * 109.36471 * 331.81985 * 7 6 5 33 33 H 1.09002 * 108.94753 * 80.12361 * 8 7 6 34 34 H 1.09003 * 108.94926 * 198.84162 * 8 7 6 35 35 H 0.97006 * 119.99303 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.45198 * 330.68258 * 21 9 8 37 37 H 1.09004 * 109.44932 * 210.76268 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6089 1.9748 -0.8478 5 6 1.6314 2.1033 1.2489 6 6 2.0195 3.5762 1.3366 7 6 3.4342 3.6911 1.8486 8 6 4.4222 3.7291 0.6686 9 7 4.0495 2.7816 -0.4000 10 16 4.1699 3.2750 -1.9762 11 8 5.1212 4.3305 -1.9945 12 8 4.3026 2.0953 -2.7569 13 6 2.6223 3.9924 -2.4177 14 1 1.8223 4.0389 -1.6936 15 6 2.4329 4.4955 -3.6874 16 7 3.4072 4.4394 -4.5690 17 14 0.7919 5.2554 -4.1558 18 1 0.8149 6.7088 -3.8522 19 1 0.5509 5.0567 -5.6076 20 1 -0.2943 4.6048 -3.3800 21 6 3.5835 1.4404 -0.1273 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5484 2.0246 1.3438 28 1 2.0902 1.5765 2.0855 29 1 1.9528 4.0295 0.3475 30 1 1.3427 4.0907 2.0187 31 1 3.5338 4.6056 2.4331 32 1 3.6609 2.8320 2.4800 33 1 4.4422 4.7379 0.2561 34 1 5.4181 3.4762 1.0326 35 1 3.2737 4.7930 -5.4624 36 1 4.0241 1.0854 0.8044 37 1 3.8795 0.7805 -0.9428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703277026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:34 Heat of formation + Delta-G solvation = -113.228080 kcal Electronic energy + Delta-G solvation = -19537.469750 eV Core-core repulsion = 16633.234519 eV Total energy + Delta-G solvation = -2904.235231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.73201 -35.35342 -34.54922 -33.91250 -33.13659 -32.60659 -29.88226 -26.15867 -25.90612 -24.69237 -22.25595 -20.10960 -19.80632 -18.37694 -17.28508 -16.24437 -15.56367 -15.02818 -14.84162 -14.68061 -13.97700 -13.58385 -13.38330 -13.23233 -12.78067 -12.58732 -12.15293 -12.02606 -11.66977 -11.44652 -11.23526 -11.18448 -10.97062 -10.73872 -10.62893 -10.60169 -10.25462 -10.21768 -10.07941 -10.02642 -9.84922 -9.74544 -9.21713 -8.83209 -8.04908 -6.66157 -5.27470 2.34082 3.07624 3.14678 3.20771 4.07428 4.54680 4.67349 5.00849 5.10399 5.23280 5.30735 5.37568 5.53536 5.67573 5.77444 5.82520 5.87897 5.94946 6.01389 6.06558 6.11927 6.20532 6.26765 6.29807 6.32685 6.41675 6.44916 6.54887 6.59207 6.72333 6.74946 6.91619 6.95418 7.37799 7.75253 8.02467 8.92853 10.27218 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.010007 C = 0.008495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.902452 B = 2797.396199 C = 3295.301863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.119 4.119 4 H 0.087 0.913 5 C -0.104 4.104 6 C -0.123 4.123 7 C -0.126 4.126 8 C 0.127 3.873 9 N -1.005 6.005 10 S 2.710 3.290 11 O -1.008 7.008 12 O -1.005 7.005 13 C -1.016 5.016 14 H 0.104 0.896 15 C 0.134 3.866 16 N -0.846 5.846 17 Si 0.916 3.084 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.262 1.262 21 C 0.131 3.869 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.290 0.710 36 H 0.063 0.937 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -4.301 11.263 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.139 4.139 4 H 0.105 0.895 5 C -0.142 4.142 6 C -0.161 4.161 7 C -0.165 4.165 8 C 0.001 3.999 9 N -0.839 5.839 10 S 2.811 3.189 11 O -0.998 6.998 12 O -0.995 6.995 13 C -1.150 5.150 14 H 0.122 0.878 15 C -0.083 4.083 16 N -0.476 5.476 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.186 1.186 21 C 0.004 3.996 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.675 -4.395 10.597 12.046 hybrid contribution -1.520 0.616 -0.110 1.643 sum -5.195 -3.779 10.487 12.298 Atomic orbital electron populations 1.21834 0.96273 1.00939 1.02000 1.21505 0.95627 0.96493 1.01822 1.21026 0.97178 0.96043 0.99701 0.89456 1.20468 1.00530 0.95540 0.97619 1.21128 0.95646 0.96723 1.02572 1.21726 0.95705 1.01528 0.97493 1.21459 0.96447 0.93373 0.88619 1.57530 1.81710 1.19719 1.24962 1.00623 0.76034 0.72968 0.69251 1.93349 1.63866 1.57422 1.85166 1.93339 1.88603 1.50842 1.66741 1.30656 1.22340 1.55882 1.06082 0.87833 1.24727 0.98262 0.91065 0.94284 1.69906 1.32549 1.38890 1.06277 0.86230 0.81826 0.79775 0.78140 1.19271 1.20062 1.18650 1.21149 0.92515 0.84025 1.01936 0.92762 0.92471 0.93302 0.91515 0.92472 0.92678 0.93065 0.90230 0.92716 0.91572 0.92208 0.89750 0.92997 0.89986 0.91807 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.61 37.16 0.36 -1.53 16 2 C -0.12 -1.58 5.37 -26.73 -0.14 -1.72 16 3 C -0.12 -1.91 2.11 -92.48 -0.20 -2.11 16 4 H 0.09 1.66 7.12 -51.93 -0.37 1.29 16 5 C -0.10 -1.45 4.30 -29.79 -0.13 -1.58 16 6 C -0.12 -1.81 5.51 -28.02 -0.15 -1.96 16 7 C -0.13 -1.73 5.71 -27.30 -0.16 -1.89 16 8 C 0.13 2.20 5.98 -2.94 -0.02 2.18 16 9 N -1.01 -20.40 2.53 -113.30 -0.29 -20.69 16 10 S 2.71 72.18 4.86 -107.50 -0.52 71.66 16 11 O -1.01 -29.61 16.70 -57.17 -0.96 -30.56 16 12 O -1.00 -29.31 16.47 -57.17 -0.94 -30.25 16 13 C -1.02 -27.49 9.23 30.60 0.28 -27.21 16 14 H 0.10 2.56 6.00 -52.48 -0.31 2.24 16 15 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 16 N -0.85 -24.92 13.19 55.43 0.73 -24.19 16 17 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 C 0.13 2.30 4.93 -4.09 -0.02 2.28 16 22 H 0.05 0.62 6.41 -51.93 -0.33 0.28 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.71 6.13 -51.93 -0.32 0.40 16 28 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 29 H 0.08 1.39 6.15 -51.93 -0.32 1.08 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 7.31 -51.93 -0.38 0.36 16 33 H 0.08 1.58 7.20 -51.93 -0.37 1.21 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 37 H 0.09 1.64 6.80 -51.93 -0.35 1.29 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -33.22 296.63 -8.45 -41.67 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.65 Total: 2.29 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -0.27 Total: -29.91 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.44 Total: -44.87 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -1.90 Total: -60.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 72.18 SS G_CDS: -0.52 Total: 71.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.22 -8.45 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703277026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.560 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds