Wall clock time and date at job start Mon Mar 30 2020 04:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.09002 * 109.18439 * 304.56072 * 3 2 1 5 5 C 1.47086 * 109.32991 * 64.13236 * 3 2 1 6 6 C 1.52567 * 114.32564 * 183.06334 * 5 3 2 7 7 C 1.50883 * 109.36010 * 274.98477 * 6 5 3 8 8 C 1.53948 * 110.09440 * 91.88407 * 7 6 5 9 9 N 1.47606 * 112.14336 * 319.43704 * 8 7 6 10 10 S 1.65604 * 118.64486 * 137.87051 * 9 8 7 11 11 O 1.42099 * 106.40005 * 23.53666 * 10 9 8 12 12 O 1.42096 * 106.40126 * 156.46400 * 10 9 8 13 13 C 1.76203 * 107.21474 * 270.00038 * 10 9 8 14 14 H 1.08003 * 120.00408 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99837 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99578 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99886 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47077 * 90.00545 * 17 15 13 19 19 H 1.48505 * 109.46828 * 210.00000 * 17 15 13 20 20 H 1.48496 * 109.47274 * 330.00112 * 17 15 13 21 21 C 1.44575 * 122.71046 * 317.87157 * 9 8 7 22 22 H 1.09000 * 109.47008 * 300.00301 * 1 2 3 23 23 H 1.09002 * 109.46827 * 59.99990 * 1 2 3 24 24 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47008 * 239.99698 * 2 1 3 26 26 H 1.09002 * 109.46827 * 120.00010 * 2 1 3 27 27 H 1.09005 * 108.51513 * 304.31174 * 5 3 2 28 28 H 1.08992 * 108.51951 * 61.96321 * 5 3 2 29 29 H 1.09004 * 109.49114 * 34.94973 * 6 5 3 30 30 H 1.08998 * 109.49466 * 154.99781 * 6 5 3 31 31 H 1.08995 * 109.36631 * 212.07648 * 7 6 5 32 32 H 1.09000 * 109.36471 * 331.81985 * 7 6 5 33 33 H 1.09002 * 108.94753 * 80.12361 * 8 7 6 34 34 H 1.09003 * 108.94926 * 198.84162 * 8 7 6 35 35 H 0.97006 * 119.99303 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.45198 * 330.68258 * 21 9 8 37 37 H 1.09004 * 109.44932 * 210.76268 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6089 1.9748 -0.8478 5 6 1.6314 2.1033 1.2489 6 6 2.0195 3.5762 1.3366 7 6 3.4342 3.6911 1.8486 8 6 4.4222 3.7291 0.6686 9 7 4.0495 2.7816 -0.4000 10 16 4.1699 3.2750 -1.9762 11 8 5.1212 4.3305 -1.9945 12 8 4.3026 2.0953 -2.7569 13 6 2.6223 3.9924 -2.4177 14 1 1.8223 4.0389 -1.6936 15 6 2.4329 4.4955 -3.6874 16 7 3.4072 4.4394 -4.5690 17 14 0.7919 5.2554 -4.1558 18 1 0.8149 6.7088 -3.8522 19 1 0.5509 5.0567 -5.6076 20 1 -0.2943 4.6048 -3.3800 21 6 3.5835 1.4404 -0.1273 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5484 2.0246 1.3438 28 1 2.0902 1.5765 2.0855 29 1 1.9528 4.0295 0.3475 30 1 1.3427 4.0907 2.0187 31 1 3.5338 4.6056 2.4331 32 1 3.6609 2.8320 2.4800 33 1 4.4422 4.7379 0.2561 34 1 5.4181 3.4762 1.0326 35 1 3.2737 4.7930 -5.4624 36 1 4.0241 1.0854 0.8044 37 1 3.8795 0.7805 -0.9428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703277026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:33 Heat of formation + Delta-G solvation = -136.890178 kcal Electronic energy + Delta-G solvation = -19538.495815 eV Core-core repulsion = 16633.234519 eV Total energy + Delta-G solvation = -2905.261296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00884 -37.50089 -36.13974 -35.88111 -35.16341 -33.99583 -31.03305 -28.27149 -27.22455 -25.96745 -23.46828 -21.52302 -21.06854 -20.24197 -19.08944 -18.24755 -17.09516 -17.01770 -16.25938 -15.79916 -15.75478 -15.42714 -14.70712 -14.55782 -14.03663 -13.95093 -13.82114 -13.45388 -13.21513 -13.06635 -13.00679 -12.69469 -12.49667 -12.44268 -12.33780 -12.23822 -11.85138 -11.78454 -11.49301 -11.26630 -11.24784 -11.20185 -10.93732 -10.86279 -9.63899 -8.72659 -7.44746 0.35451 1.31424 1.31759 1.47542 2.19331 2.58660 2.83446 3.73759 3.81527 3.98233 4.01888 4.15870 4.19965 4.31922 4.42638 4.52554 4.57552 4.72688 4.75187 4.81624 4.91386 4.94983 5.01591 5.12304 5.16665 5.24241 5.27387 5.31650 5.36402 5.40809 5.50947 5.57628 5.66207 5.70504 5.97460 6.17726 6.80432 8.22073 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.010007 C = 0.008495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.902452 B = 2797.396199 C = 3295.301863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.116 4.116 4 H 0.047 0.953 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.116 4.116 8 C 0.115 3.885 9 N -0.997 5.997 10 S 2.709 3.291 11 O -1.047 7.047 12 O -1.043 7.043 13 C -1.027 5.027 14 H 0.119 0.881 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.985 3.015 18 H -0.254 1.254 19 H -0.264 1.264 20 H -0.248 1.248 21 C 0.122 3.878 22 H 0.068 0.932 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.297 0.703 36 H 0.103 0.897 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 -4.638 13.998 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.137 4.137 4 H 0.066 0.934 5 C -0.141 4.141 6 C -0.165 4.165 7 C -0.154 4.154 8 C -0.010 4.010 9 N -0.834 5.834 10 S 2.811 3.189 11 O -1.037 7.037 12 O -1.033 7.033 13 C -1.161 5.161 14 H 0.137 0.863 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.803 3.197 18 H -0.179 1.179 19 H -0.188 1.188 20 H -0.171 1.171 21 C -0.004 4.004 22 H 0.087 0.913 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.615 -4.741 13.339 15.230 hybrid contribution -0.845 0.677 -0.891 1.402 sum -6.460 -4.064 12.448 14.601 Atomic orbital electron populations 1.21823 0.95173 1.02067 1.01769 1.21510 0.96584 0.94781 1.02425 1.20985 0.95497 0.97598 0.99582 0.93405 1.20460 1.01606 0.95024 0.96978 1.21180 0.96892 0.97321 1.01147 1.21722 0.93827 1.03970 0.95921 1.21781 0.98859 0.91453 0.88866 1.57023 1.81958 1.21210 1.23214 1.00245 0.75884 0.72018 0.70720 1.93284 1.65206 1.58696 1.86510 1.93276 1.89022 1.51825 1.69212 1.30941 1.22840 1.55554 1.06770 0.86287 1.25974 1.02593 0.91353 0.94193 1.70007 1.35187 1.40535 1.07154 0.85210 0.76630 0.79339 0.78527 1.17851 1.18837 1.17110 1.21433 0.94201 0.81994 1.02758 0.91289 0.94391 0.91533 0.93120 0.89689 0.91386 0.90328 0.93936 0.90280 0.89196 0.89591 0.92120 0.91243 0.89285 0.87885 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.61 71.98 0.69 -2.68 16 2 C -0.11 -2.89 5.37 30.59 0.16 -2.72 16 3 C -0.12 -3.57 2.11 -12.00 -0.03 -3.60 16 4 H 0.05 1.84 7.12 -2.39 -0.02 1.82 16 5 C -0.10 -2.52 4.30 28.61 0.12 -2.40 16 6 C -0.13 -3.39 5.51 29.76 0.16 -3.22 16 7 C -0.12 -2.79 5.71 30.23 0.17 -2.61 16 8 C 0.11 3.88 5.98 86.49 0.52 4.39 16 9 N -1.00 -40.66 2.53 -512.37 -1.30 -41.96 16 10 S 2.71 150.37 4.86 -56.49 -0.27 150.10 16 11 O -1.05 -64.44 16.70 -128.00 -2.14 -66.58 16 12 O -1.04 -64.05 16.47 -128.00 -2.11 -66.15 16 13 C -1.03 -57.23 9.23 67.74 0.63 -56.60 16 14 H 0.12 6.03 6.00 -2.91 -0.02 6.01 16 15 C 0.07 4.03 5.46 84.66 0.46 4.49 16 16 N -0.90 -54.70 13.19 21.45 0.28 -54.42 16 17 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 18 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 21 C 0.12 4.19 4.93 87.38 0.43 4.62 16 22 H 0.07 1.33 6.41 -2.39 -0.02 1.32 16 23 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.41 8.11 -2.39 -0.02 1.40 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.50 6.13 -2.38 -0.01 1.48 16 28 H 0.08 1.53 7.35 -2.39 -0.02 1.51 16 29 H 0.04 1.45 6.15 -2.38 -0.01 1.43 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.67 7.31 -2.39 -0.02 1.65 16 33 H 0.06 2.32 7.20 -2.39 -0.02 2.30 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.30 16.30 8.31 -92.70 -0.77 15.53 16 36 H 0.10 2.72 8.06 -2.39 -0.02 2.70 16 37 H 0.06 2.43 6.80 -2.39 -0.02 2.42 16 Total: -1.00 -75.90 296.63 0.86 -75.03 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.05 Total: 20.22 kcal Atomic # 6 Polarization: -63.67 SS G_CDS: 3.33 Total: -60.34 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -1.02 Total: -96.38 kcal Atomic # 8 Polarization: -128.48 SS G_CDS: -4.25 Total: -132.73 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 150.37 SS G_CDS: -0.27 Total: 150.10 kcal Total: -75.90 0.86 -75.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703277026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.857 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds