Wall clock time and date at job start Mon Mar 30 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46922 * 2 1 4 4 H 1.08995 * 109.47039 * 183.11351 * 3 2 1 5 5 C 1.50697 * 109.47019 * 63.11482 * 3 2 1 6 6 H 1.08001 * 119.99740 * 239.99753 * 5 3 2 7 7 C 1.37879 * 120.00162 * 60.00063 * 5 3 2 8 8 N 1.31516 * 119.99616 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46995 * 120.00055 * 9 7 5 12 12 H 1.48503 * 109.46944 * 240.00394 * 9 7 5 13 13 N 1.46901 * 109.47028 * 303.11517 * 3 2 1 14 14 C 1.46471 * 111.00058 * 305.21039 * 13 3 2 15 15 C 1.53299 * 110.07787 * 163.08117 * 14 13 3 16 16 S 1.81814 * 108.62556 * 62.37076 * 15 14 13 17 17 O 1.42094 * 108.70489 * 193.62774 * 16 15 14 18 18 O 1.42100 * 108.70118 * 62.28139 * 16 15 14 19 19 C 1.81817 * 101.17392 * 307.95693 * 16 15 14 20 20 H 1.09003 * 109.59998 * 292.48978 * 19 16 15 21 21 C 1.52992 * 109.60608 * 172.16741 * 19 16 15 22 22 C 1.46473 * 111.00180 * 179.35167 * 13 3 2 23 23 H 1.09004 * 109.46982 * 184.84230 * 1 2 3 24 24 H 1.09005 * 109.47588 * 304.83848 * 1 2 3 25 25 H 1.08998 * 109.47524 * 64.83784 * 1 2 3 26 26 H 1.08990 * 109.47102 * 239.99976 * 2 1 3 27 27 H 1.08995 * 109.46905 * 119.99365 * 2 1 3 28 28 H 0.96999 * 119.99286 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.39784 * 283.12949 * 14 13 3 30 30 H 1.09001 * 109.39588 * 42.86760 * 14 13 3 31 31 H 1.09001 * 109.46311 * 302.72463 * 15 14 13 32 32 H 1.09000 * 109.79666 * 182.21187 * 15 14 13 33 33 H 1.09003 * 109.47353 * 59.99974 * 21 19 16 34 34 H 1.08995 * 109.47388 * 179.97438 * 21 19 16 35 35 H 1.09005 * 109.46956 * 299.99936 * 21 19 16 36 36 H 1.09001 * 109.39423 * 76.87112 * 22 13 3 37 37 H 1.08998 * 109.32618 * 317.09075 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1285 1.4431 -0.0558 5 6 1.6016 2.1303 1.2672 6 1 0.9769 3.0098 1.2160 7 6 1.9982 1.6368 2.4921 8 7 2.7595 0.5662 2.5544 9 14 1.4554 2.4897 4.0629 10 1 0.6122 3.6639 3.7226 11 1 0.6724 1.5419 4.8955 12 1 2.6509 2.9420 4.8190 13 7 1.4898 2.1564 -1.1600 14 6 1.7923 1.4466 -2.4051 15 6 0.8820 1.9488 -3.5317 16 16 1.2194 3.7139 -3.8077 17 8 0.1804 4.2562 -4.6111 18 8 2.5700 3.8598 -4.2246 19 6 1.0557 4.3719 -2.1207 20 1 0.0172 4.2968 -1.7981 21 6 1.4963 5.8368 -2.0960 22 6 1.9454 3.5483 -1.1844 23 1 -0.3633 -1.0240 0.0868 24 1 -0.3634 0.5871 0.8435 25 1 -0.3634 0.4369 -0.9301 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.0388 0.2193 3.4161 29 1 2.8327 1.6225 -2.6784 30 1 1.6330 0.3781 -2.2604 31 1 -0.1606 1.8165 -3.2424 32 1 1.0839 1.3905 -4.4459 33 1 0.8689 6.4164 -2.7732 34 1 1.3969 6.2291 -1.0840 35 1 2.5366 5.9087 -2.4134 36 1 2.9757 3.5857 -1.5382 37 1 1.8929 3.9627 -0.1776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707563401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:39 Heat of formation + Delta-G solvation = -66.619087 kcal Electronic energy + Delta-G solvation = -19266.756682 eV Core-core repulsion = 16364.542569 eV Total energy + Delta-G solvation = -2902.214113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.33880 -36.72478 -35.83581 -34.41239 -33.10937 -31.23771 -30.03321 -26.40500 -25.91613 -23.18939 -22.56628 -21.37656 -19.12772 -18.50860 -16.67701 -16.35235 -16.29682 -15.47607 -15.15341 -15.01929 -14.04129 -13.91366 -13.55388 -13.04167 -12.76479 -12.68594 -12.33128 -12.07939 -11.93582 -11.84784 -11.78548 -11.58186 -11.43690 -11.14798 -11.04145 -10.80440 -10.59812 -10.24161 -10.09103 -9.82185 -9.75712 -9.51957 -8.95552 -8.53106 -7.50551 -6.13767 -4.18601 0.26276 2.88607 3.21428 3.30660 3.33035 3.80562 4.11044 4.30552 4.54944 4.77809 4.92064 4.98339 5.18314 5.30850 5.37958 5.44996 5.66288 5.73298 5.99613 6.06706 6.09852 6.22183 6.33228 6.43226 6.48947 6.62565 6.96636 7.09555 7.20504 7.48149 7.56172 7.68909 7.89231 8.14760 8.35628 8.85686 9.46183 10.92423 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.007065 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.840730 B = 3962.292305 C = 4510.871150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C 0.221 3.779 4 H 0.006 0.994 5 C -0.503 4.503 6 H 0.066 0.934 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.546 5.546 14 C 0.054 3.946 15 C -0.589 4.589 16 S 2.401 3.599 17 O -0.957 6.957 18 O -0.947 6.947 19 C -0.549 4.549 20 H 0.142 0.858 21 C -0.138 4.138 22 C 0.072 3.928 23 H 0.018 0.982 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.018 0.982 27 H 0.097 0.903 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 3.422 -7.820 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.155 4.155 3 C 0.116 3.884 4 H 0.023 0.977 5 C -0.541 4.541 6 H 0.084 0.916 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.271 5.271 14 C -0.075 4.075 15 C -0.720 4.720 16 S 2.586 3.414 17 O -0.954 6.954 18 O -0.944 6.944 19 C -0.661 4.661 20 H 0.160 0.840 21 C -0.197 4.197 22 C -0.057 4.057 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.104 3.751 -8.444 9.747 hybrid contribution 0.251 -0.157 1.474 1.504 sum -2.853 3.595 -6.970 8.345 Atomic orbital electron populations 1.21504 0.97162 0.97966 1.01511 1.21680 0.95270 0.98011 1.00568 1.19273 0.92758 0.90587 0.85732 0.97661 1.21065 1.31394 1.12214 0.89463 0.91625 1.24900 0.95016 0.95022 0.99058 1.69871 1.35553 1.22266 1.25103 0.86493 0.78382 0.79588 0.83273 1.19727 1.21014 1.21131 1.61375 1.61935 1.01026 1.02799 1.21874 0.95074 1.02078 0.88486 1.30169 1.10892 1.23531 1.07440 1.08525 0.75268 0.79150 0.78469 1.93535 1.58571 1.77150 1.66133 1.93542 1.35051 1.85411 1.80370 1.29950 1.10294 1.05254 1.20565 0.83967 1.21557 1.02107 0.91372 1.04654 1.21842 0.93634 0.88834 1.01388 0.96316 0.92006 0.94155 0.96397 0.88465 0.92863 0.93804 0.87900 0.84401 0.85444 0.91563 0.89872 0.91048 0.93938 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 9.47 37.16 0.35 -2.11 16 2 C -0.12 -2.53 4.97 -26.73 -0.13 -2.66 16 3 C 0.22 4.95 1.79 -68.86 -0.12 4.83 16 4 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 5 C -0.50 -12.26 6.49 -34.44 -0.22 -12.48 16 6 H 0.07 1.59 6.79 -52.49 -0.36 1.24 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 8 N -0.89 -23.56 11.30 55.43 0.63 -22.93 16 9 Si 0.89 19.99 29.54 -169.99 -5.02 14.96 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.55 -10.09 3.54 -228.45 -0.81 -10.90 16 14 C 0.05 0.87 4.87 -3.90 -0.02 0.85 16 15 C -0.59 -7.77 6.60 37.31 0.25 -7.52 16 16 S 2.40 35.24 4.73 -107.50 -0.51 34.73 16 17 O -0.96 -16.10 18.11 -57.81 -1.05 -17.14 16 18 O -0.95 -16.45 18.06 -57.81 -1.04 -17.49 16 19 C -0.55 -7.75 3.22 -26.64 -0.09 -7.84 16 20 H 0.14 1.85 8.14 -51.93 -0.42 1.43 16 21 C -0.14 -1.71 9.20 37.15 0.34 -1.37 16 22 C 0.07 1.24 4.52 -3.96 -0.02 1.22 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 1.34 7.16 -51.93 -0.37 0.97 16 25 H 0.04 0.73 7.37 -51.93 -0.38 0.34 16 26 H 0.02 0.35 6.16 -51.93 -0.32 0.03 16 27 H 0.10 2.39 5.99 -51.93 -0.31 2.08 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.04 0.71 7.93 -51.93 -0.41 0.29 16 30 H 0.10 1.65 5.39 -51.93 -0.28 1.37 16 31 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.11 2.11 6.04 -51.93 -0.31 1.80 16 LS Contribution 297.24 15.07 4.48 4.48 Total: -1.00 -29.50 297.24 -8.76 -38.26 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.68 Total: 1.64 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 0.24 Total: -25.61 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.18 Total: -33.83 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -2.09 Total: -34.64 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 35.24 SS G_CDS: -0.51 Total: 34.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.50 -8.76 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707563401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.358 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds