Wall clock time and date at job start Mon Mar 30 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46922 * 2 1 4 4 H 1.08995 * 109.47039 * 183.11351 * 3 2 1 5 5 C 1.50697 * 109.47019 * 63.11482 * 3 2 1 6 6 H 1.08001 * 119.99740 * 239.99753 * 5 3 2 7 7 C 1.37879 * 120.00162 * 60.00063 * 5 3 2 8 8 N 1.31516 * 119.99616 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46995 * 120.00055 * 9 7 5 12 12 H 1.48503 * 109.46944 * 240.00394 * 9 7 5 13 13 N 1.46901 * 109.47028 * 303.11517 * 3 2 1 14 14 C 1.46471 * 111.00058 * 305.21039 * 13 3 2 15 15 C 1.53299 * 110.07787 * 163.08117 * 14 13 3 16 16 S 1.81814 * 108.62556 * 62.37076 * 15 14 13 17 17 O 1.42094 * 108.70489 * 193.62774 * 16 15 14 18 18 O 1.42100 * 108.70118 * 62.28139 * 16 15 14 19 19 C 1.81817 * 101.17392 * 307.95693 * 16 15 14 20 20 H 1.09003 * 109.59998 * 292.48978 * 19 16 15 21 21 C 1.52992 * 109.60608 * 172.16741 * 19 16 15 22 22 C 1.46473 * 111.00180 * 179.35167 * 13 3 2 23 23 H 1.09004 * 109.46982 * 184.84230 * 1 2 3 24 24 H 1.09005 * 109.47588 * 304.83848 * 1 2 3 25 25 H 1.08998 * 109.47524 * 64.83784 * 1 2 3 26 26 H 1.08990 * 109.47102 * 239.99976 * 2 1 3 27 27 H 1.08995 * 109.46905 * 119.99365 * 2 1 3 28 28 H 0.96999 * 119.99286 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.39784 * 283.12949 * 14 13 3 30 30 H 1.09001 * 109.39588 * 42.86760 * 14 13 3 31 31 H 1.09001 * 109.46311 * 302.72463 * 15 14 13 32 32 H 1.09000 * 109.79666 * 182.21187 * 15 14 13 33 33 H 1.09003 * 109.47353 * 59.99974 * 21 19 16 34 34 H 1.08995 * 109.47388 * 179.97438 * 21 19 16 35 35 H 1.09005 * 109.46956 * 299.99936 * 21 19 16 36 36 H 1.09001 * 109.39423 * 76.87112 * 22 13 3 37 37 H 1.08998 * 109.32618 * 317.09075 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1285 1.4431 -0.0558 5 6 1.6016 2.1303 1.2672 6 1 0.9769 3.0098 1.2160 7 6 1.9982 1.6368 2.4921 8 7 2.7595 0.5662 2.5544 9 14 1.4554 2.4897 4.0629 10 1 0.6122 3.6639 3.7226 11 1 0.6724 1.5419 4.8955 12 1 2.6509 2.9420 4.8190 13 7 1.4898 2.1564 -1.1600 14 6 1.7923 1.4466 -2.4051 15 6 0.8820 1.9488 -3.5317 16 16 1.2194 3.7139 -3.8077 17 8 0.1804 4.2562 -4.6111 18 8 2.5700 3.8598 -4.2246 19 6 1.0557 4.3719 -2.1207 20 1 0.0172 4.2968 -1.7981 21 6 1.4963 5.8368 -2.0960 22 6 1.9454 3.5483 -1.1844 23 1 -0.3633 -1.0240 0.0868 24 1 -0.3634 0.5871 0.8435 25 1 -0.3634 0.4369 -0.9301 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.0388 0.2193 3.4161 29 1 2.8327 1.6225 -2.6784 30 1 1.6330 0.3781 -2.2604 31 1 -0.1606 1.8165 -3.2424 32 1 1.0839 1.3905 -4.4459 33 1 0.8689 6.4164 -2.7732 34 1 1.3969 6.2291 -1.0840 35 1 2.5366 5.9087 -2.4134 36 1 2.9757 3.5857 -1.5382 37 1 1.8929 3.9627 -0.1776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707563401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:39 Heat of formation + Delta-G solvation = -87.411430 kcal Electronic energy + Delta-G solvation = -19267.658306 eV Core-core repulsion = 16364.542569 eV Total energy + Delta-G solvation = -2903.115737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80777 -38.00176 -37.09496 -35.92077 -34.52219 -32.91779 -31.40980 -28.08098 -27.28947 -24.83987 -23.82960 -22.73449 -20.77828 -19.71575 -18.15883 -17.97022 -17.51175 -16.83168 -16.70783 -16.36592 -15.69270 -15.31618 -14.97452 -14.34206 -14.21008 -13.94911 -13.70405 -13.53610 -13.29197 -13.10942 -13.07095 -12.88561 -12.83824 -12.79703 -12.49698 -12.27974 -12.27061 -11.91127 -11.69752 -11.34693 -11.28074 -10.96235 -10.68120 -10.40099 -9.06636 -8.06851 -6.16015 -0.90161 1.42622 1.47181 1.55588 1.73935 2.43706 2.65903 2.86207 3.20543 3.26155 3.58238 3.77727 3.90590 4.14288 4.21692 4.28601 4.55187 4.61444 4.68521 4.76045 4.85013 4.89252 4.92691 5.02709 5.06112 5.15512 5.33788 5.44959 5.49796 5.74933 5.80399 5.90895 6.25587 6.34609 6.63975 6.95433 7.51542 8.98546 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.007065 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.840730 B = 3962.292305 C = 4510.871150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.115 4.115 3 C 0.225 3.775 4 H -0.032 1.032 5 C -0.502 4.502 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.544 5.544 14 C 0.047 3.953 15 C -0.575 4.575 16 S 2.412 3.588 17 O -0.975 6.975 18 O -0.977 6.977 19 C -0.541 4.541 20 H 0.158 0.842 21 C -0.145 4.145 22 C 0.071 3.929 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.259 0.741 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 3.764 -8.761 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.153 4.153 3 C 0.119 3.881 4 H -0.014 1.014 5 C -0.541 4.541 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.269 5.269 14 C -0.082 4.082 15 C -0.708 4.708 16 S 2.599 3.401 17 O -0.972 6.972 18 O -0.974 6.974 19 C -0.653 4.653 20 H 0.176 0.824 21 C -0.204 4.204 22 C -0.058 4.058 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.125 0.875 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.603 4.127 -9.410 11.259 hybrid contribution 0.744 -0.274 1.733 1.906 sum -3.859 3.853 -7.677 9.417 Atomic orbital electron populations 1.21392 0.95472 0.98759 1.01514 1.21564 0.96673 0.97189 0.99910 1.19039 0.90628 0.91575 0.86844 1.01444 1.21321 1.30463 1.11907 0.90373 0.91665 1.25558 0.95391 0.95640 1.01697 1.70004 1.36899 1.23560 1.25356 0.85642 0.77788 0.78796 0.80207 1.18911 1.21203 1.21453 1.61329 1.61371 1.01448 1.02706 1.21974 0.95843 1.02203 0.88188 1.30083 1.11367 1.21723 1.07589 1.08098 0.74105 0.79717 0.78140 1.93513 1.58803 1.78062 1.66867 1.93505 1.36615 1.86197 1.81095 1.29891 1.10488 1.05729 1.19177 0.82395 1.21676 1.02416 0.90447 1.05831 1.21808 0.94228 0.88517 1.01285 0.94734 0.94290 0.92115 0.94491 0.91756 0.93181 0.94153 0.87460 0.82321 0.82299 0.89840 0.88882 0.91237 0.94581 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 9.47 71.98 0.68 -3.63 16 2 C -0.12 -4.92 4.97 30.60 0.15 -4.77 16 3 C 0.23 10.12 1.79 44.17 0.08 10.20 16 4 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 5 C -0.50 -24.58 6.49 25.60 0.17 -24.42 16 6 H 0.07 3.14 6.79 -2.91 -0.02 3.12 16 7 C 0.02 0.81 5.30 84.65 0.45 1.26 16 8 N -0.92 -49.73 11.30 21.45 0.24 -49.49 16 9 Si 0.95 41.19 29.54 68.60 2.03 43.21 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.54 -19.45 3.54 -876.69 -3.10 -22.55 16 14 C 0.05 1.41 4.87 86.48 0.42 1.83 16 15 C -0.58 -13.19 6.60 72.08 0.48 -12.71 16 16 S 2.41 65.48 4.73 -56.49 -0.27 65.22 16 17 O -0.98 -30.38 18.11 -127.39 -2.31 -32.69 16 18 O -0.98 -32.69 18.06 -127.39 -2.30 -34.99 16 19 C -0.54 -14.24 3.22 30.65 0.10 -14.14 16 20 H 0.16 3.68 8.14 -2.39 -0.02 3.66 16 21 C -0.15 -3.34 9.20 71.98 0.66 -2.68 16 22 C 0.07 2.37 4.52 86.44 0.39 2.76 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 1.63 7.16 -2.38 -0.02 1.62 16 25 H 0.06 2.02 7.37 -2.39 -0.02 2.00 16 26 H 0.04 1.41 6.16 -2.39 -0.01 1.39 16 27 H 0.06 3.21 5.99 -2.39 -0.01 3.20 16 28 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.04 1.25 7.93 -2.39 -0.02 1.23 16 30 H 0.11 3.15 5.39 -2.39 -0.01 3.14 16 31 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.16 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.04 1.24 7.93 -2.39 -0.02 1.22 16 37 H 0.10 3.60 6.04 -2.39 -0.01 3.59 16 Total: -1.00 -63.09 297.24 -1.09 -64.17 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.05 Total: 13.41 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 3.58 Total: -46.30 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -2.86 Total: -72.04 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -4.61 Total: -67.68 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 65.48 SS G_CDS: -0.27 Total: 65.22 kcal Total: -63.09 -1.09 -64.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707563401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.236 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds